Wall clock time and date at job start Tue Mar 31 2020 05:21:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 119.99850 * 2 1 4 4 C 1.50704 * 109.47004 * 270.00177 * 3 2 1 5 5 H 1.08000 * 119.99670 * 0.02562 * 4 3 2 6 6 C 1.37869 * 119.99803 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00074 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00156 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.46968 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47458 * 119.99753 * 8 6 4 11 11 H 1.48504 * 109.47250 * 240.00153 * 8 6 4 12 12 C 1.34773 * 120.00045 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00026 * 182.25800 * 12 2 1 14 14 C 1.50700 * 119.99998 * 2.25573 * 12 2 1 15 15 O 1.42905 * 110.27466 * 51.23083 * 14 12 2 16 16 C 1.54591 * 110.31279 * 289.13843 * 14 12 2 17 17 C 1.54942 * 102.92394 * 219.12779 * 16 14 12 18 18 N 1.48527 * 103.22516 * 37.41594 * 17 16 14 19 19 C 1.46896 * 110.99905 * 200.28210 * 18 17 16 20 20 C 1.50701 * 109.47036 * 290.12180 * 19 18 17 21 21 C 1.38230 * 120.00268 * 269.72679 * 20 19 18 22 22 C 1.38243 * 120.00013 * 179.76628 * 21 20 19 23 23 C 1.38228 * 119.99941 * 0.50241 * 22 21 20 24 24 C 1.38238 * 119.99938 * 359.75262 * 23 22 21 25 25 C 1.38232 * 120.00162 * 359.97438 * 24 23 22 26 26 C 1.48127 * 105.82407 * 320.73217 * 18 17 16 27 27 H 1.09001 * 109.46926 * 234.83591 * 1 2 3 28 28 H 1.08996 * 109.47356 * 354.83232 * 1 2 3 29 29 H 1.09001 * 109.47672 * 114.84098 * 1 2 3 30 30 H 1.09002 * 109.46713 * 30.00272 * 3 2 1 31 31 H 1.08998 * 109.46577 * 150.00232 * 3 2 1 32 32 H 0.97006 * 120.00291 * 179.97438 * 7 6 4 33 33 H 0.96693 * 113.99720 * 287.97671 * 15 14 12 34 34 H 1.09001 * 110.72350 * 337.48476 * 16 14 12 35 35 H 1.09004 * 110.72298 * 100.76651 * 16 14 12 36 36 H 1.09004 * 110.66176 * 155.84901 * 17 16 14 37 37 H 1.08998 * 110.66672 * 278.81113 * 17 16 14 38 38 H 1.09003 * 109.47564 * 50.12284 * 19 18 17 39 39 H 1.09001 * 109.47711 * 170.12775 * 19 18 17 40 40 H 1.08002 * 120.00173 * 359.97438 * 21 20 19 41 41 H 1.08002 * 119.99562 * 180.23207 * 22 21 20 42 42 H 1.07997 * 120.00066 * 179.72582 * 23 22 21 43 43 H 1.08009 * 119.99988 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.00028 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.99906 * 266.08106 * 26 18 17 46 46 H 1.09007 * 109.95168 * 144.71373 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0973 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5541 3.6176 -0.6731 8 14 3.4374 3.4172 -3.4339 9 1 2.8595 2.4171 -4.3673 10 1 2.8004 4.7382 -3.6665 11 1 4.8999 3.5247 -3.6680 12 6 2.1389 -1.1672 -0.0005 13 8 3.3510 -1.1676 0.0409 14 6 1.3863 -2.4717 -0.0525 15 8 0.4479 -2.4595 -1.1302 16 6 0.6601 -2.7261 1.2883 17 6 0.8459 -4.2498 1.4994 18 7 2.2203 -4.4978 0.9939 19 6 2.4115 -5.9162 0.6630 20 6 2.4328 -6.7294 1.9316 21 6 3.6297 -6.9640 2.5823 22 6 3.6485 -7.7059 3.7486 23 6 2.4719 -8.2220 4.2585 24 6 1.2757 -7.9919 3.6049 25 6 1.2561 -7.2452 2.4418 26 6 2.3668 -3.6486 -0.2109 27 1 -0.3633 -0.5919 0.8401 28 1 -0.3634 1.0234 0.0926 29 1 -0.3634 -0.4317 -0.9326 30 1 1.6083 2.0284 0.5139 31 1 3.1499 1.1384 0.5138 32 1 4.0316 4.4432 -0.8504 33 1 -0.3164 -1.8866 -0.9797 34 1 1.1316 -2.1647 2.0949 35 1 -0.3973 -2.4739 1.2082 36 1 0.7735 -4.5032 2.5571 37 1 0.1129 -4.8107 0.9197 38 1 1.5928 -6.2548 0.0280 39 1 3.3568 -6.0419 0.1350 40 1 4.5496 -6.5648 2.1813 41 1 4.5832 -7.8860 4.2589 42 1 2.4872 -8.8054 5.1672 43 1 0.3564 -8.3955 4.0031 44 1 0.3216 -7.0658 1.9309 45 1 2.1176 -4.2220 -1.1038 46 1 3.3882 -3.2741 -0.2801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522256919.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:51 Heat of formation + Delta-G solvation = -33.621936 kcal Electronic energy + Delta-G solvation = -26991.617822 eV Core-core repulsion = 23267.814234 eV Total energy + Delta-G solvation = -3723.803588 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -40.50361 -39.40569 -37.71571 -36.11612 -34.82111 -32.70370 -32.55991 -31.06620 -30.11444 -28.68233 -27.92038 -26.14976 -25.45308 -23.35734 -22.79378 -21.91193 -21.08357 -20.86375 -19.17785 -17.21761 -16.79492 -16.55371 -16.50221 -15.97484 -15.44629 -15.37279 -15.07472 -14.58545 -14.51771 -14.24960 -13.90436 -13.55988 -13.31564 -13.22612 -12.99168 -12.62173 -12.52958 -12.27775 -12.09524 -12.01637 -11.88107 -11.55819 -11.40719 -11.28049 -11.21350 -11.08265 -11.00749 -10.78833 -10.59945 -10.54227 -10.15058 -9.63145 -9.08538 -9.00920 -8.74573 -8.45372 -8.41478 -7.71396 -6.05999 -4.10764 1.16413 1.25113 3.12734 3.29295 3.37162 3.41977 3.52565 3.80223 4.01855 4.32367 4.42909 4.46693 4.61332 4.66506 4.68330 4.82963 4.93851 4.97049 5.08687 5.18109 5.28591 5.33413 5.36398 5.42799 5.48375 5.49088 5.59051 5.63582 5.70806 5.77767 5.83768 5.87198 5.93271 6.01616 6.22079 6.29187 6.34610 6.46321 6.74550 6.82516 6.90400 6.98685 7.39610 7.47170 7.57851 7.90367 8.20744 8.31054 8.85292 9.00324 9.54508 11.02144 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026211 B = 0.002706 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.977892 B =10343.226858 C =10622.414384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.597 5.597 3 C 0.244 3.756 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.497 3.503 13 O -0.525 6.525 14 C 0.109 3.891 15 O -0.552 6.552 16 C -0.146 4.146 17 C 0.039 3.961 18 N -0.504 5.504 19 C 0.083 3.917 20 C -0.072 4.072 21 C -0.098 4.098 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.114 4.114 26 C 0.054 3.946 27 H 0.051 0.949 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.033 0.967 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.378 0.622 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.048 0.952 38 H 0.046 0.954 39 H 0.086 0.914 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.061 0.939 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.829 -21.510 7.731 24.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.330 5.330 3 C 0.125 3.875 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.208 1.208 12 C 0.282 3.718 13 O -0.402 6.402 14 C 0.064 3.936 15 O -0.363 6.363 16 C -0.184 4.184 17 C -0.088 4.088 18 N -0.228 5.228 19 C -0.045 4.045 20 C -0.073 4.073 21 C -0.116 4.116 22 C -0.139 4.139 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.133 4.133 26 C -0.074 4.074 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.232 0.768 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.104 0.896 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.080 0.920 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.276 -21.576 7.910 24.104 hybrid contribution -0.963 0.679 -1.328 1.775 sum -8.239 -20.897 6.583 23.407 Atomic orbital electron populations 1.21940 0.82133 1.03861 0.99460 1.48096 1.05812 1.07886 1.71163 1.19380 0.92701 0.77791 0.97651 1.21472 1.36468 1.06288 0.92266 0.92345 1.24941 0.95321 0.96383 0.97503 1.69944 1.38388 1.14372 1.30686 0.86433 0.78120 0.78282 0.84548 1.19763 1.20954 1.20835 1.20609 0.88317 0.85276 0.77619 1.90654 1.13651 1.86561 1.49311 1.22179 0.89729 0.94380 0.87316 1.86641 1.36037 1.70888 1.42762 1.23255 1.00583 0.97120 0.97471 1.23244 0.89556 0.94947 1.01088 1.65013 1.25679 1.04595 1.27485 1.21241 1.02215 0.87511 0.93522 1.19729 0.93410 0.97359 0.96795 1.21087 0.97884 0.97470 0.95166 1.21166 0.98229 0.98210 0.96343 1.21134 0.92838 1.00324 0.99902 1.21092 0.97973 0.99240 0.95802 1.21051 0.97545 0.98161 0.96506 1.22885 1.01041 0.91690 0.91749 0.93027 0.89779 0.92796 0.94907 0.93702 0.92742 0.76833 0.89292 0.89726 0.89706 0.93346 0.93539 0.89552 0.85793 0.86128 0.86351 0.86288 0.86460 0.92046 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 8.97 59.85 0.54 1.58 16 2 N -0.60 -12.55 2.86 -182.95 -0.52 -13.07 16 3 C 0.24 6.37 5.17 -5.19 -0.03 6.35 16 4 C -0.53 -15.02 9.39 -34.44 -0.32 -15.34 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 9 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 C 0.50 10.55 6.62 -10.99 -0.07 10.47 16 13 O -0.53 -13.42 14.83 5.56 0.08 -13.33 16 14 C 0.11 1.74 0.97 -90.41 -0.09 1.65 16 15 O -0.55 -8.34 12.69 -35.23 -0.45 -8.78 16 16 C -0.15 -1.84 5.02 -24.87 -0.12 -1.96 16 17 C 0.04 0.45 5.54 -1.90 -0.01 0.44 16 18 N -0.50 -6.70 5.26 -231.69 -1.22 -7.92 16 19 C 0.08 0.91 4.85 -4.98 -0.02 0.89 16 20 C -0.07 -0.77 5.10 -104.62 -0.53 -1.30 16 21 C -0.10 -1.01 9.70 -39.58 -0.38 -1.40 16 22 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 23 C -0.12 -1.06 10.05 -39.59 -0.40 -1.46 16 24 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 25 C -0.11 -1.08 8.72 -39.58 -0.35 -1.42 16 26 C 0.05 0.84 6.11 -2.63 -0.02 0.82 16 27 H 0.05 0.59 5.68 -51.93 -0.30 0.30 16 28 H 0.08 1.24 7.77 -51.93 -0.40 0.84 16 29 H 0.05 0.71 5.56 -51.93 -0.29 0.42 16 30 H 0.03 0.86 7.88 -51.93 -0.41 0.45 16 31 H 0.04 1.33 7.39 -51.93 -0.38 0.94 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.38 4.50 5.02 45.56 0.23 4.73 16 34 H 0.09 1.24 7.86 -51.93 -0.41 0.83 16 35 H 0.08 0.83 6.77 -51.93 -0.35 0.47 16 36 H 0.08 0.93 7.80 -51.93 -0.41 0.53 16 37 H 0.05 0.50 7.86 -51.93 -0.41 0.09 16 38 H 0.05 0.48 7.84 -51.93 -0.41 0.07 16 39 H 0.09 0.92 8.05 -51.93 -0.42 0.50 16 40 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 42 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 43 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 44 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 45 H 0.06 0.90 7.60 -51.93 -0.39 0.51 16 46 H 0.12 2.13 6.45 -51.93 -0.33 1.79 16 LS Contribution 367.48 15.07 5.54 5.54 Total: -1.00 -34.45 367.48 -9.89 -44.34 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -6.34 Total: 4.16 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -2.70 Total: -2.01 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: -1.01 Total: -46.93 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.36 Total: -22.12 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.45 -9.89 -44.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522256919.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.719 kcal (2) G-P(sol) polarization free energy of solvation -34.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds