Wall clock time and date at job start Tue Mar 31 2020 05:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 119.99850 * 2 1 4 4 C 1.50704 * 109.47004 * 270.00177 * 3 2 1 5 5 H 1.08000 * 119.99670 * 0.02562 * 4 3 2 6 6 C 1.37869 * 119.99803 * 180.02562 * 4 3 2 7 7 N 1.31517 * 120.00074 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00156 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.46968 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47458 * 119.99753 * 8 6 4 11 11 H 1.48504 * 109.47250 * 240.00153 * 8 6 4 12 12 C 1.34773 * 120.00045 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00026 * 182.25800 * 12 2 1 14 14 C 1.50700 * 119.99998 * 2.25573 * 12 2 1 15 15 O 1.42905 * 110.27466 * 51.23083 * 14 12 2 16 16 C 1.54591 * 110.31279 * 289.13843 * 14 12 2 17 17 C 1.54942 * 102.92394 * 219.12779 * 16 14 12 18 18 N 1.48527 * 103.22516 * 37.41594 * 17 16 14 19 19 C 1.46896 * 110.99905 * 200.28210 * 18 17 16 20 20 C 1.50701 * 109.47036 * 290.12180 * 19 18 17 21 21 C 1.38230 * 120.00268 * 269.72679 * 20 19 18 22 22 C 1.38243 * 120.00013 * 179.76628 * 21 20 19 23 23 C 1.38228 * 119.99941 * 0.50241 * 22 21 20 24 24 C 1.38238 * 119.99938 * 359.75262 * 23 22 21 25 25 C 1.38232 * 120.00162 * 359.97438 * 24 23 22 26 26 C 1.48127 * 105.82407 * 320.73217 * 18 17 16 27 27 H 1.09001 * 109.46926 * 234.83591 * 1 2 3 28 28 H 1.08996 * 109.47356 * 354.83232 * 1 2 3 29 29 H 1.09001 * 109.47672 * 114.84098 * 1 2 3 30 30 H 1.09002 * 109.46713 * 30.00272 * 3 2 1 31 31 H 1.08998 * 109.46577 * 150.00232 * 3 2 1 32 32 H 0.97006 * 120.00291 * 179.97438 * 7 6 4 33 33 H 0.96693 * 113.99720 * 287.97671 * 15 14 12 34 34 H 1.09001 * 110.72350 * 337.48476 * 16 14 12 35 35 H 1.09004 * 110.72298 * 100.76651 * 16 14 12 36 36 H 1.09004 * 110.66176 * 155.84901 * 17 16 14 37 37 H 1.08998 * 110.66672 * 278.81113 * 17 16 14 38 38 H 1.09003 * 109.47564 * 50.12284 * 19 18 17 39 39 H 1.09001 * 109.47711 * 170.12775 * 19 18 17 40 40 H 1.08002 * 120.00173 * 359.97438 * 21 20 19 41 41 H 1.08002 * 119.99562 * 180.23207 * 22 21 20 42 42 H 1.07997 * 120.00066 * 179.72582 * 23 22 21 43 43 H 1.08009 * 119.99988 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.00028 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.99906 * 266.08106 * 26 18 17 46 46 H 1.09007 * 109.95168 * 144.71373 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0973 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5541 3.6176 -0.6731 8 14 3.4374 3.4172 -3.4339 9 1 2.8595 2.4171 -4.3673 10 1 2.8004 4.7382 -3.6665 11 1 4.8999 3.5247 -3.6680 12 6 2.1389 -1.1672 -0.0005 13 8 3.3510 -1.1676 0.0409 14 6 1.3863 -2.4717 -0.0525 15 8 0.4479 -2.4595 -1.1302 16 6 0.6601 -2.7261 1.2883 17 6 0.8459 -4.2498 1.4994 18 7 2.2203 -4.4978 0.9939 19 6 2.4115 -5.9162 0.6630 20 6 2.4328 -6.7294 1.9316 21 6 3.6297 -6.9640 2.5823 22 6 3.6485 -7.7059 3.7486 23 6 2.4719 -8.2220 4.2585 24 6 1.2757 -7.9919 3.6049 25 6 1.2561 -7.2452 2.4418 26 6 2.3668 -3.6486 -0.2109 27 1 -0.3633 -0.5919 0.8401 28 1 -0.3634 1.0234 0.0926 29 1 -0.3634 -0.4317 -0.9326 30 1 1.6083 2.0284 0.5139 31 1 3.1499 1.1384 0.5138 32 1 4.0316 4.4432 -0.8504 33 1 -0.3164 -1.8866 -0.9797 34 1 1.1316 -2.1647 2.0949 35 1 -0.3973 -2.4739 1.2082 36 1 0.7735 -4.5032 2.5571 37 1 0.1129 -4.8107 0.9197 38 1 1.5928 -6.2548 0.0280 39 1 3.3568 -6.0419 0.1350 40 1 4.5496 -6.5648 2.1813 41 1 4.5832 -7.8860 4.2589 42 1 2.4872 -8.8054 5.1672 43 1 0.3564 -8.3955 4.0031 44 1 0.3216 -7.0658 1.9309 45 1 2.1176 -4.2220 -1.1038 46 1 3.3882 -3.2741 -0.2801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522256919.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:50 Heat of formation + Delta-G solvation = -58.794528 kcal Electronic energy + Delta-G solvation = -26992.709387 eV Core-core repulsion = 23267.814234 eV Total energy + Delta-G solvation = -3724.895153 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.81418 -40.26397 -39.00832 -37.41807 -36.48065 -34.66697 -33.59075 -31.74198 -31.09870 -30.05838 -29.58439 -27.54394 -26.57686 -25.18643 -23.52041 -22.77606 -22.49955 -21.72935 -20.63991 -18.74423 -18.50630 -17.75078 -17.53306 -17.39280 -16.70888 -16.37001 -16.28065 -16.11369 -15.84001 -15.41477 -15.02107 -14.59656 -14.37351 -14.25405 -14.21750 -14.11050 -13.66673 -13.60737 -13.36874 -13.19312 -13.16305 -13.04848 -12.87853 -12.60226 -12.52794 -12.39384 -12.36223 -12.23348 -11.82251 -11.78327 -11.72714 -11.63918 -10.67516 -10.38096 -9.76512 -9.71590 -9.48797 -9.38084 -8.25596 -6.40411 0.45929 0.56333 1.34116 1.36871 1.48286 1.58261 2.19862 2.38281 2.69542 3.03903 3.07738 3.15782 3.37434 3.48173 3.66937 3.88782 3.97469 4.13748 4.21392 4.25106 4.31483 4.32521 4.37285 4.46486 4.52823 4.61223 4.70026 4.71013 4.79480 4.81199 4.83806 4.89853 4.97190 5.03402 5.15354 5.18397 5.21830 5.51083 5.58806 5.67390 5.71121 5.77364 5.79224 5.96673 6.02144 6.17607 6.52454 6.62210 6.70582 7.21710 7.36472 8.81746 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.026211 B = 0.002706 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.977892 B =10343.226858 C =10622.414384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.603 5.603 3 C 0.257 3.743 4 C -0.542 4.542 5 H 0.051 0.949 6 C 0.008 3.992 7 N -0.927 5.927 8 Si 0.968 3.032 9 H -0.269 1.269 10 H -0.266 1.266 11 H -0.282 1.282 12 C 0.483 3.517 13 O -0.585 6.585 14 C 0.122 3.878 15 O -0.552 6.552 16 C -0.139 4.139 17 C 0.045 3.955 18 N -0.518 5.518 19 C 0.086 3.914 20 C -0.087 4.087 21 C -0.118 4.118 22 C -0.131 4.131 23 C -0.127 4.127 24 C -0.126 4.126 25 C -0.118 4.118 26 C 0.057 3.943 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.030 0.970 31 H -0.004 1.004 32 H 0.268 0.732 33 H 0.392 0.608 34 H 0.072 0.928 35 H 0.124 0.876 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.117 0.883 41 H 0.134 0.866 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.133 0.867 45 H 0.069 0.931 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.762 -23.137 7.670 27.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.334 5.334 3 C 0.136 3.864 4 C -0.581 4.581 5 H 0.069 0.931 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.792 3.208 9 H -0.193 1.193 10 H -0.191 1.191 11 H -0.208 1.208 12 C 0.271 3.729 13 O -0.465 6.465 14 C 0.077 3.923 15 O -0.366 6.366 16 C -0.178 4.178 17 C -0.082 4.082 18 N -0.243 5.243 19 C -0.042 4.042 20 C -0.087 4.087 21 C -0.137 4.137 22 C -0.149 4.149 23 C -0.146 4.146 24 C -0.144 4.144 25 C -0.136 4.136 26 C -0.071 4.071 27 H 0.111 0.889 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.014 0.986 32 H 0.077 0.923 33 H 0.248 0.752 34 H 0.091 0.909 35 H 0.142 0.858 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.135 0.865 41 H 0.152 0.848 42 H 0.158 0.842 43 H 0.161 0.839 44 H 0.151 0.849 45 H 0.087 0.913 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.280 -23.215 7.856 26.577 hybrid contribution -0.042 1.153 -1.243 1.696 sum -10.322 -22.062 6.613 25.239 Atomic orbital electron populations 1.22316 0.78119 1.05176 1.02498 1.48112 1.08348 1.06184 1.70733 1.18856 0.91282 0.80182 0.96086 1.21703 1.36910 1.06525 0.92953 0.93104 1.25856 0.94849 0.96422 1.02012 1.70054 1.38857 1.14856 1.32950 0.85366 0.77895 0.78457 0.79077 1.19299 1.19108 1.20786 1.21726 0.88116 0.86969 0.76131 1.90619 1.16499 1.87632 1.51767 1.21945 0.89865 0.90881 0.89615 1.86646 1.36295 1.71038 1.42607 1.23292 1.02137 0.97922 0.94402 1.23288 0.88867 0.94097 1.01925 1.64954 1.27416 1.05612 1.26340 1.21235 1.02408 0.86287 0.94232 1.19743 0.94051 0.98086 0.96824 1.21210 0.97928 0.98469 0.96106 1.21400 0.99420 0.98038 0.96062 1.21471 0.92552 0.99970 1.00559 1.21433 0.98957 0.98602 0.95371 1.21254 0.97572 0.97959 0.96844 1.22674 0.99015 0.92128 0.93281 0.88865 0.89755 0.90430 0.95243 0.98568 0.92325 0.75162 0.90891 0.85785 0.88737 0.91130 0.92229 0.90237 0.86518 0.84839 0.84156 0.83892 0.84895 0.91293 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.66 8.97 127.77 1.15 2.81 16 2 N -0.60 -25.65 2.86 -851.13 -2.43 -28.08 16 3 C 0.26 14.04 5.17 85.63 0.44 14.49 16 4 C -0.54 -31.77 9.39 25.60 0.24 -31.53 16 5 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 6 C 0.01 0.45 5.46 84.65 0.46 0.91 16 7 N -0.93 -56.59 13.29 21.44 0.28 -56.30 16 8 Si 0.97 45.58 29.54 68.60 2.03 47.61 16 9 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 C 0.48 21.08 6.62 87.66 0.58 21.66 16 13 O -0.58 -31.90 14.83 -3.03 -0.04 -31.94 16 14 C 0.12 3.79 0.97 -10.66 -0.01 3.78 16 15 O -0.55 -15.25 12.69 -148.98 -1.89 -17.14 16 16 C -0.14 -3.14 5.02 31.80 0.16 -2.98 16 17 C 0.05 0.92 5.54 86.65 0.48 1.40 16 18 N -0.52 -13.47 5.26 -886.93 -4.67 -18.14 16 19 C 0.09 1.82 4.85 85.56 0.42 2.24 16 20 C -0.09 -1.74 5.10 -19.87 -0.10 -1.84 16 21 C -0.12 -2.46 9.70 22.27 0.22 -2.24 16 22 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 23 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 24 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 25 C -0.12 -1.93 8.72 22.27 0.19 -1.73 16 26 C 0.06 1.80 6.11 86.40 0.53 2.33 16 27 H 0.09 1.80 5.68 -2.39 -0.01 1.78 16 28 H 0.08 2.35 7.77 -2.39 -0.02 2.33 16 29 H 0.08 1.79 5.56 -2.39 -0.01 1.78 16 30 H 0.03 1.60 7.88 -2.39 -0.02 1.58 16 31 H 0.00 -0.24 7.39 -2.39 -0.02 -0.26 16 32 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 33 H 0.39 7.82 5.02 -74.06 -0.37 7.45 16 34 H 0.07 1.92 7.86 -2.39 -0.02 1.90 16 35 H 0.12 1.79 6.77 -2.39 -0.02 1.77 16 36 H 0.09 1.78 7.80 -2.38 -0.02 1.76 16 37 H 0.07 1.15 7.86 -2.39 -0.02 1.13 16 38 H 0.06 1.10 7.84 -2.39 -0.02 1.08 16 39 H 0.08 1.74 8.05 -2.39 -0.02 1.72 16 40 H 0.12 2.45 8.06 -2.91 -0.02 2.42 16 41 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 42 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 43 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 44 H 0.13 1.69 8.06 -2.91 -0.02 1.67 16 45 H 0.07 2.01 7.60 -2.39 -0.02 1.99 16 46 H 0.08 3.08 6.45 -2.38 -0.02 3.06 16 Total: -1.00 -79.43 367.48 -0.69 -80.12 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.61 Total: 19.93 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 5.42 Total: 3.95 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -6.81 Total: -102.52 kcal Atomic # 8 Polarization: -47.15 SS G_CDS: -1.94 Total: -49.08 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -79.43 -0.69 -80.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522256919.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.322 kcal (2) G-P(sol) polarization free energy of solvation -79.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds