Wall clock time and date at job start Tue Mar 31 2020 04:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38265 * 119.99872 * 2 1 4 4 C 1.38210 * 120.00006 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00120 * 359.73780 * 4 3 2 6 6 C 1.38221 * 119.99722 * 0.51474 * 5 4 3 7 7 C 1.50703 * 119.99662 * 179.76252 * 6 5 4 8 8 N 1.46499 * 109.47138 * 269.72500 * 7 6 5 9 9 C 1.34777 * 119.99665 * 180.28062 * 8 7 6 10 10 O 1.21283 * 119.99990 * 359.71991 * 9 8 7 11 11 C 1.50698 * 119.99538 * 179.72653 * 9 8 7 12 12 N 1.46899 * 109.46987 * 179.97438 * 11 9 8 13 13 C 1.48532 * 111.00521 * 52.59789 * 12 11 9 14 14 C 1.54935 * 103.23120 * 159.71906 * 13 12 11 15 15 C 1.54592 * 102.92439 * 322.59281 * 14 13 12 16 16 O 1.42904 * 110.30745 * 263.03746 * 15 14 13 17 17 C 1.50696 * 110.31198 * 140.86892 * 15 14 13 18 18 H 1.07997 * 120.00332 * 244.28476 * 17 15 14 19 19 C 1.37879 * 120.00147 * 64.28318 * 17 15 14 20 20 N 1.31516 * 119.99850 * 359.97438 * 19 17 15 21 21 Si 1.86801 * 120.00247 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.46941 * 89.99745 * 21 19 17 23 23 H 1.48494 * 109.46969 * 210.00187 * 21 19 17 24 24 H 1.48500 * 109.46723 * 329.99717 * 21 19 17 25 25 C 1.47902 * 111.00335 * 169.99982 * 12 11 9 26 26 C 1.38209 * 120.00251 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47324 * 270.02500 * 1 2 3 28 28 H 1.08994 * 109.46983 * 30.02853 * 1 2 3 29 29 H 1.09005 * 109.46946 * 150.02707 * 1 2 3 30 30 H 1.08002 * 119.99579 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.99756 * 180.02562 * 4 3 2 32 32 H 1.07997 * 120.00424 * 180.27547 * 5 4 3 33 33 H 1.09009 * 109.46601 * 149.72402 * 7 6 5 34 34 H 1.08998 * 109.47035 * 29.72910 * 7 6 5 35 35 H 0.97001 * 119.99790 * 359.97438 * 8 7 6 36 36 H 1.09003 * 109.47112 * 299.99065 * 11 9 8 37 37 H 1.08993 * 109.47916 * 59.99687 * 11 9 8 38 38 H 1.08996 * 110.66766 * 278.16308 * 13 12 11 39 39 H 1.09006 * 110.66183 * 41.29019 * 13 12 11 40 40 H 1.08994 * 110.72666 * 204.23027 * 14 13 12 41 41 H 1.09011 * 110.87113 * 81.01934 * 14 13 12 42 42 H 0.96698 * 113.99567 * 295.71424 * 16 15 14 43 43 H 0.97002 * 120.00353 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.91425 * 333.50442 * 25 12 11 45 45 H 1.08999 * 109.91911 * 94.60024 * 25 12 11 46 46 H 1.07997 * 120.00067 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0065 6 6 3.5806 -1.1968 0.0013 7 6 4.3343 -2.5019 0.0024 8 7 4.5790 -2.9257 -1.3784 9 6 5.2368 -4.0762 -1.6236 10 8 5.6305 -4.7581 -0.7011 11 6 5.4832 -4.5152 -3.0440 12 7 6.2136 -5.7897 -3.0429 13 6 5.5245 -6.7975 -2.1968 14 6 6.0890 -8.1432 -2.7174 15 6 6.2082 -7.9023 -4.2397 16 8 5.0655 -8.4299 -4.9164 17 6 7.4696 -8.5323 -4.7718 18 1 8.2486 -7.9118 -5.1894 19 6 7.6291 -9.9011 -4.7254 20 7 6.6807 -10.6568 -4.2164 21 14 9.1929 -10.6820 -5.3843 22 1 10.1960 -10.7774 -4.2936 23 1 8.8888 -12.0419 -5.8976 24 1 9.7368 -9.8475 -6.4856 25 6 6.2659 -6.3719 -4.4015 26 6 2.1981 -1.1969 0.0005 27 1 -0.3634 0.0004 1.0276 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3633 -0.8903 -0.5134 30 1 1.6582 2.1327 -0.0004 31 1 4.1203 2.1328 0.0010 32 1 5.3517 0.0002 0.0115 33 1 3.7449 -3.2613 0.5166 34 1 5.2864 -2.3712 0.5166 35 1 4.2638 -2.3804 -2.1161 36 1 4.5291 -4.6433 -3.5554 37 1 6.0738 -3.7589 -3.5609 38 1 5.7771 -6.6550 -1.1461 39 1 4.4455 -6.7502 -2.3440 40 1 5.3963 -8.9584 -2.5089 41 1 7.0668 -8.3487 -2.2816 42 1 4.9772 -9.3905 -4.8488 43 1 6.7927 -11.6198 -4.1841 44 1 5.4125 -6.0279 -4.9860 45 1 7.1941 -6.0823 -4.8941 46 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592150724.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:00 Heat of formation + Delta-G solvation = -54.394668 kcal Electronic energy + Delta-G solvation = -26039.982014 eV Core-core repulsion = 22315.277653 eV Total energy + Delta-G solvation = -3724.704361 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.15987 -39.45032 -37.82479 -35.27042 -34.47260 -33.02659 -32.00731 -31.71585 -30.26884 -27.95232 -27.49690 -27.00599 -25.40159 -23.79534 -22.43508 -21.06615 -20.73978 -20.09479 -19.35261 -17.19572 -17.01016 -16.59500 -16.11563 -16.01270 -15.27601 -15.01551 -14.81532 -14.77237 -14.30959 -14.09110 -13.79798 -13.65035 -13.39743 -13.15785 -13.01415 -12.77458 -12.47433 -12.33403 -12.24592 -11.91725 -11.51154 -11.43019 -11.33102 -11.29216 -11.10605 -10.82674 -10.51868 -10.43563 -10.26935 -9.85992 -9.55039 -9.19309 -9.10760 -9.04171 -8.93784 -8.52175 -7.98790 -7.72690 -6.13166 -4.18902 0.88701 1.02020 2.80947 3.06502 3.29047 3.35472 3.39314 3.55580 4.30242 4.37955 4.43226 4.53713 4.69577 4.76647 4.91929 4.97526 5.03467 5.15376 5.16354 5.22122 5.35266 5.44948 5.52093 5.53258 5.56667 5.70982 5.77876 5.84848 6.08605 6.17001 6.20032 6.23564 6.25622 6.30838 6.40308 6.43304 6.62947 6.79910 7.00091 7.24521 7.37545 7.43296 7.62144 7.74676 7.76121 7.92016 8.22362 8.39341 8.82283 9.47539 9.58676 10.94629 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.033464 B = 0.002178 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.523834 B =12852.224795 C =13113.171497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.089 4.089 3 C -0.116 4.116 4 C -0.118 4.118 5 C -0.106 4.106 6 C -0.101 4.101 7 C 0.162 3.838 8 N -0.734 5.734 9 C 0.514 3.486 10 O -0.516 6.516 11 C 0.028 3.972 12 N -0.498 5.498 13 C 0.031 3.969 14 C -0.119 4.119 15 C 0.242 3.758 16 O -0.596 6.596 17 C -0.526 4.526 18 H 0.062 0.938 19 C 0.067 3.933 20 N -0.900 5.900 21 Si 0.901 3.099 22 H -0.279 1.279 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.053 3.947 26 C -0.102 4.102 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.399 0.601 36 H 0.060 0.940 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.023 0.977 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.384 0.616 43 H 0.266 0.734 44 H 0.036 0.964 45 H 0.080 0.920 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.601 22.596 8.015 26.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.134 4.134 4 C -0.136 4.136 5 C -0.125 4.125 6 C -0.101 4.101 7 C 0.039 3.961 8 N -0.389 5.389 9 C 0.301 3.699 10 O -0.391 6.391 11 C -0.104 4.104 12 N -0.223 5.223 13 C -0.096 4.096 14 C -0.158 4.158 15 C 0.202 3.798 16 O -0.406 6.406 17 C -0.564 4.564 18 H 0.080 0.920 19 C -0.135 4.135 20 N -0.540 5.540 21 Si 0.729 3.271 22 H -0.205 1.205 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.074 4.074 26 C -0.120 4.120 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.233 0.767 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.042 0.958 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.235 0.765 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.098 0.902 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.911 22.626 8.783 26.216 hybrid contribution -0.068 -0.825 -0.829 1.171 sum -9.978 21.801 7.954 25.261 Atomic orbital electron populations 1.20808 0.91035 1.02951 1.02452 1.19948 0.96228 0.93065 0.99654 1.21097 0.94333 0.97552 1.00431 1.21151 0.94287 0.98053 1.00130 1.21122 1.00116 0.91835 0.99430 1.19916 0.93802 0.94699 1.01723 1.20127 0.99539 0.92276 0.84132 1.46078 1.60082 1.24656 1.08044 1.20787 0.76932 0.80119 0.92063 1.90671 1.49339 1.52670 1.46376 1.22222 0.98834 0.96476 0.92847 1.64799 1.46520 1.01209 1.09812 1.23525 0.94582 0.92545 0.98983 1.22997 1.00503 0.93722 0.98590 1.19351 0.84855 0.87496 0.88051 1.86062 1.48273 1.28311 1.77979 1.21691 1.02377 0.92104 1.40275 0.91972 1.25021 0.96863 0.97247 0.94332 1.69626 1.33346 1.05438 1.45639 0.86451 0.83094 0.78383 0.79209 1.20543 1.21214 1.19835 1.22935 1.00252 0.96093 0.88115 1.21020 0.93431 0.97879 0.99680 0.91085 0.91494 0.91357 0.86071 0.85863 0.85765 0.90769 0.90641 0.76677 0.92249 0.88320 0.88792 0.95847 0.91896 0.91439 0.76468 0.92396 0.94597 0.90150 0.85802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.01 36.00 0.36 -0.28 16 2 C -0.09 -0.67 5.88 -104.62 -0.62 -1.29 16 3 C -0.12 -0.82 9.70 -39.58 -0.38 -1.20 16 4 C -0.12 -0.85 10.05 -39.59 -0.40 -1.24 16 5 C -0.11 -0.85 9.70 -39.58 -0.38 -1.24 16 6 C -0.10 -0.88 5.25 -104.62 -0.55 -1.43 16 7 C 0.16 1.68 5.80 -5.19 -0.03 1.65 16 8 N -0.73 -8.15 5.55 -61.47 -0.34 -8.49 16 9 C 0.51 7.86 7.54 -10.99 -0.08 7.78 16 10 O -0.52 -9.91 13.52 5.55 0.08 -9.83 16 11 C 0.03 0.44 5.52 -4.98 -0.03 0.41 16 12 N -0.50 -10.25 5.26 -231.89 -1.22 -11.47 16 13 C 0.03 0.67 5.30 -1.90 -0.01 0.66 16 14 C -0.12 -2.97 5.49 -24.87 -0.14 -3.11 16 15 C 0.24 6.25 0.99 -90.42 -0.09 6.16 16 16 O -0.60 -15.95 12.93 -35.23 -0.46 -16.41 16 17 C -0.53 -14.53 8.10 -34.44 -0.28 -14.80 16 18 H 0.06 1.70 7.35 -52.49 -0.39 1.32 16 19 C 0.07 1.82 5.26 -17.82 -0.09 1.72 16 20 N -0.90 -24.74 10.88 55.43 0.60 -24.13 16 21 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.05 1.19 6.16 -2.75 -0.02 1.17 16 26 C -0.10 -0.85 9.36 -39.59 -0.37 -1.22 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 29 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 30 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 31 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 32 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.07 0.82 8.09 -51.92 -0.42 0.40 16 34 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 35 H 0.40 3.50 8.46 -40.82 -0.35 3.15 16 36 H 0.06 0.87 7.81 -51.93 -0.41 0.47 16 37 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.09 2.10 5.97 -51.93 -0.31 1.79 16 39 H 0.02 0.50 8.02 -51.93 -0.42 0.09 16 40 H 0.06 1.61 8.05 -51.93 -0.42 1.19 16 41 H 0.07 1.79 7.86 -51.92 -0.41 1.38 16 42 H 0.38 10.45 7.05 45.56 0.32 10.78 16 43 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 44 H 0.04 0.77 7.39 -51.93 -0.38 0.38 16 45 H 0.08 1.78 7.40 -51.93 -0.38 1.39 16 46 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 373.64 15.07 5.63 5.63 Total: -1.00 -31.42 373.64 -10.32 -41.74 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -6.49 Total: 12.99 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -3.11 Total: -6.26 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: -0.96 Total: -44.09 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.38 Total: -26.24 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.42 -10.32 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150724.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.651 kcal (2) G-P(sol) polarization free energy of solvation -31.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds