Wall clock time and date at job start Tue Mar 31 2020 04:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38265 * 119.99872 * 2 1 4 4 C 1.38210 * 120.00006 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00120 * 359.73780 * 4 3 2 6 6 C 1.38221 * 119.99722 * 0.51474 * 5 4 3 7 7 C 1.50703 * 119.99662 * 179.76252 * 6 5 4 8 8 N 1.46499 * 109.47138 * 269.72500 * 7 6 5 9 9 C 1.34777 * 119.99665 * 180.28062 * 8 7 6 10 10 O 1.21283 * 119.99990 * 359.71991 * 9 8 7 11 11 C 1.50698 * 119.99538 * 179.72653 * 9 8 7 12 12 N 1.46899 * 109.46987 * 179.97438 * 11 9 8 13 13 C 1.48532 * 111.00521 * 52.59789 * 12 11 9 14 14 C 1.54935 * 103.23120 * 159.71906 * 13 12 11 15 15 C 1.54592 * 102.92439 * 322.59281 * 14 13 12 16 16 O 1.42904 * 110.30745 * 263.03746 * 15 14 13 17 17 C 1.50696 * 110.31198 * 140.86892 * 15 14 13 18 18 H 1.07997 * 120.00332 * 244.28476 * 17 15 14 19 19 C 1.37879 * 120.00147 * 64.28318 * 17 15 14 20 20 N 1.31516 * 119.99850 * 359.97438 * 19 17 15 21 21 Si 1.86801 * 120.00247 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.46941 * 89.99745 * 21 19 17 23 23 H 1.48494 * 109.46969 * 210.00187 * 21 19 17 24 24 H 1.48500 * 109.46723 * 329.99717 * 21 19 17 25 25 C 1.47902 * 111.00335 * 169.99982 * 12 11 9 26 26 C 1.38209 * 120.00251 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47324 * 270.02500 * 1 2 3 28 28 H 1.08994 * 109.46983 * 30.02853 * 1 2 3 29 29 H 1.09005 * 109.46946 * 150.02707 * 1 2 3 30 30 H 1.08002 * 119.99579 * 359.97438 * 3 2 1 31 31 H 1.07998 * 119.99756 * 180.02562 * 4 3 2 32 32 H 1.07997 * 120.00424 * 180.27547 * 5 4 3 33 33 H 1.09009 * 109.46601 * 149.72402 * 7 6 5 34 34 H 1.08998 * 109.47035 * 29.72910 * 7 6 5 35 35 H 0.97001 * 119.99790 * 359.97438 * 8 7 6 36 36 H 1.09003 * 109.47112 * 299.99065 * 11 9 8 37 37 H 1.08993 * 109.47916 * 59.99687 * 11 9 8 38 38 H 1.08996 * 110.66766 * 278.16308 * 13 12 11 39 39 H 1.09006 * 110.66183 * 41.29019 * 13 12 11 40 40 H 1.08994 * 110.72666 * 204.23027 * 14 13 12 41 41 H 1.09011 * 110.87113 * 81.01934 * 14 13 12 42 42 H 0.96698 * 113.99567 * 295.71424 * 16 15 14 43 43 H 0.97002 * 120.00353 * 179.97438 * 20 19 17 44 44 H 1.09004 * 109.91425 * 333.50442 * 25 12 11 45 45 H 1.08999 * 109.91911 * 94.60024 * 25 12 11 46 46 H 1.07997 * 120.00067 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1975 0.0005 5 6 4.2717 0.0002 0.0065 6 6 3.5806 -1.1968 0.0013 7 6 4.3343 -2.5019 0.0024 8 7 4.5790 -2.9257 -1.3784 9 6 5.2368 -4.0762 -1.6236 10 8 5.6305 -4.7581 -0.7011 11 6 5.4832 -4.5152 -3.0440 12 7 6.2136 -5.7897 -3.0429 13 6 5.5245 -6.7975 -2.1968 14 6 6.0890 -8.1432 -2.7174 15 6 6.2082 -7.9023 -4.2397 16 8 5.0655 -8.4299 -4.9164 17 6 7.4696 -8.5323 -4.7718 18 1 8.2486 -7.9118 -5.1894 19 6 7.6291 -9.9011 -4.7254 20 7 6.6807 -10.6568 -4.2164 21 14 9.1929 -10.6820 -5.3843 22 1 10.1960 -10.7774 -4.2936 23 1 8.8888 -12.0419 -5.8976 24 1 9.7368 -9.8475 -6.4856 25 6 6.2659 -6.3719 -4.4015 26 6 2.1981 -1.1969 0.0005 27 1 -0.3634 0.0004 1.0276 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3633 -0.8903 -0.5134 30 1 1.6582 2.1327 -0.0004 31 1 4.1203 2.1328 0.0010 32 1 5.3517 0.0002 0.0115 33 1 3.7449 -3.2613 0.5166 34 1 5.2864 -2.3712 0.5166 35 1 4.2638 -2.3804 -2.1161 36 1 4.5291 -4.6433 -3.5554 37 1 6.0738 -3.7589 -3.5609 38 1 5.7771 -6.6550 -1.1461 39 1 4.4455 -6.7502 -2.3440 40 1 5.3963 -8.9584 -2.5089 41 1 7.0668 -8.3487 -2.2816 42 1 4.9772 -9.3905 -4.8488 43 1 6.7927 -11.6198 -4.1841 44 1 5.4125 -6.0279 -4.9860 45 1 7.1941 -6.0823 -4.8941 46 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592150724.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:58 Heat of formation + Delta-G solvation = -77.014926 kcal Electronic energy + Delta-G solvation = -26040.962902 eV Core-core repulsion = 22315.277653 eV Total energy + Delta-G solvation = -3725.685249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.22966 -40.36052 -39.46573 -36.59996 -35.97708 -34.11524 -33.66005 -32.59726 -31.76556 -29.82256 -28.55816 -27.77317 -26.77459 -25.46232 -23.02779 -22.40889 -21.69390 -21.36117 -21.26126 -19.12623 -18.15392 -17.53052 -17.17015 -16.99365 -16.78563 -16.48245 -16.25243 -15.92791 -15.68498 -15.43507 -14.85618 -14.63768 -14.49684 -14.18102 -14.08089 -13.81521 -13.76102 -13.74112 -13.34375 -13.10207 -12.97940 -12.91098 -12.86330 -12.60638 -12.40474 -12.31771 -12.09121 -11.97770 -11.89931 -11.86839 -11.15627 -10.78346 -10.58014 -10.17013 -10.02619 -9.78831 -9.55885 -9.33639 -8.20114 -6.33641 0.27932 0.45211 1.41939 1.43137 1.53223 1.61362 2.10744 2.40714 2.85693 3.03098 3.18245 3.61748 3.81440 3.86559 3.91745 4.03805 4.23624 4.27565 4.28483 4.33286 4.35672 4.46660 4.48250 4.53350 4.58760 4.62732 4.69379 4.81933 4.83301 4.89534 4.97725 5.09516 5.12570 5.28024 5.29964 5.40117 5.46870 5.53534 5.59479 5.62343 5.67401 5.77144 5.94210 6.07207 6.08790 6.15974 6.54950 6.70973 7.25837 7.35743 7.44454 8.86250 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.033464 B = 0.002178 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.523834 B =12852.224795 C =13113.171497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.097 4.097 3 C -0.119 4.119 4 C -0.121 4.121 5 C -0.115 4.115 6 C -0.108 4.108 7 C 0.166 3.834 8 N -0.712 5.712 9 C 0.516 3.484 10 O -0.562 6.562 11 C 0.025 3.975 12 N -0.509 5.509 13 C 0.048 3.952 14 C -0.113 4.113 15 C 0.226 3.774 16 O -0.600 6.600 17 C -0.551 4.551 18 H 0.058 0.942 19 C 0.023 3.977 20 N -0.917 5.917 21 Si 0.963 3.037 22 H -0.278 1.278 23 H -0.280 1.280 24 H -0.269 1.269 25 C 0.063 3.937 26 C -0.113 4.113 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.130 0.870 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.414 0.586 36 H 0.077 0.923 37 H 0.130 0.870 38 H 0.089 0.911 39 H 0.026 0.974 40 H 0.045 0.955 41 H 0.042 0.958 42 H 0.378 0.622 43 H 0.269 0.731 44 H 0.047 0.953 45 H 0.081 0.919 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.983 24.915 7.539 28.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.097 4.097 3 C -0.137 4.137 4 C -0.139 4.139 5 C -0.133 4.133 6 C -0.109 4.109 7 C 0.043 3.957 8 N -0.366 5.366 9 C 0.303 3.697 10 O -0.440 6.440 11 C -0.106 4.106 12 N -0.234 5.234 13 C -0.079 4.079 14 C -0.152 4.152 15 C 0.186 3.814 16 O -0.410 6.410 17 C -0.590 4.590 18 H 0.076 0.924 19 C -0.177 4.177 20 N -0.558 5.558 21 Si 0.788 3.212 22 H -0.204 1.204 23 H -0.206 1.206 24 H -0.194 1.194 25 C -0.065 4.065 26 C -0.132 4.132 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.160 0.840 31 H 0.161 0.839 32 H 0.148 0.852 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.250 0.750 36 H 0.095 0.905 37 H 0.148 0.852 38 H 0.107 0.893 39 H 0.045 0.955 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.228 0.772 43 H 0.078 0.922 44 H 0.065 0.935 45 H 0.099 0.901 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.323 25.003 8.292 28.293 hybrid contribution -0.010 -1.456 -0.649 1.594 sum -10.332 23.547 7.643 26.826 Atomic orbital electron populations 1.20843 0.89759 1.03568 1.03016 1.20217 0.97319 0.92936 0.99199 1.21415 0.94539 0.98249 0.99474 1.21429 0.94586 0.98520 0.99334 1.21264 1.00584 0.91931 0.99526 1.19758 0.93896 0.94032 1.03184 1.20097 0.99347 0.92997 0.83235 1.45885 1.58258 1.23309 1.09151 1.20730 0.76911 0.80716 0.91383 1.90658 1.51601 1.54354 1.47384 1.22367 0.99783 0.94644 0.93770 1.64693 1.47854 1.02453 1.08399 1.23267 0.94504 0.91276 0.98852 1.22807 0.98786 0.95017 0.98567 1.19606 0.84025 0.89693 0.88045 1.86052 1.48797 1.27845 1.78277 1.21964 1.03191 0.92770 1.41027 0.92397 1.25758 0.99747 0.97690 0.94469 1.69714 1.34616 1.05650 1.45806 0.85488 0.79505 0.77611 0.78584 1.20401 1.20560 1.19356 1.22764 1.00754 0.93717 0.89263 1.21119 0.93389 0.98462 1.00211 0.90497 0.90297 0.91359 0.84029 0.83862 0.85173 0.91734 0.91224 0.74961 0.90507 0.85234 0.89270 0.95533 0.93630 0.93946 0.77172 0.92209 0.93515 0.90071 0.85825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 10.01 71.24 0.71 -0.34 16 2 C -0.10 -1.28 5.88 -19.87 -0.12 -1.40 16 3 C -0.12 -1.38 9.70 22.27 0.22 -1.17 16 4 C -0.12 -1.44 10.05 22.27 0.22 -1.22 16 5 C -0.11 -1.64 9.70 22.27 0.22 -1.43 16 6 C -0.11 -1.77 5.25 -19.86 -0.10 -1.87 16 7 C 0.17 3.32 5.80 85.63 0.50 3.82 16 8 N -0.71 -14.74 5.55 -466.78 -2.59 -17.33 16 9 C 0.52 15.13 7.54 87.66 0.66 15.80 16 10 O -0.56 -21.53 13.52 -3.04 -0.04 -21.57 16 11 C 0.03 0.74 5.52 85.56 0.47 1.21 16 12 N -0.51 -20.48 5.26 -887.57 -4.67 -25.15 16 13 C 0.05 2.13 5.30 86.65 0.46 2.59 16 14 C -0.11 -5.76 5.49 31.80 0.17 -5.59 16 15 C 0.23 11.77 0.99 -10.66 -0.01 11.76 16 16 O -0.60 -32.44 12.93 -148.98 -1.93 -34.36 16 17 C -0.55 -30.72 8.10 25.60 0.21 -30.52 16 18 H 0.06 3.19 7.35 -2.91 -0.02 3.17 16 19 C 0.02 1.25 5.26 84.65 0.45 1.70 16 20 N -0.92 -51.09 10.88 21.45 0.23 -50.85 16 21 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 22 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 C 0.06 2.74 6.16 86.45 0.53 3.27 16 26 C -0.11 -1.76 9.36 22.27 0.21 -1.55 16 27 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.08 0.53 8.09 -2.39 -0.02 0.51 16 29 H 0.07 0.62 8.09 -2.38 -0.02 0.60 16 30 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 31 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 32 H 0.13 1.65 8.06 -2.91 -0.02 1.62 16 33 H 0.06 1.43 8.09 -2.38 -0.02 1.41 16 34 H 0.07 1.49 8.08 -2.39 -0.02 1.47 16 35 H 0.41 6.28 8.46 -92.71 -0.78 5.50 16 36 H 0.08 2.03 7.81 -2.39 -0.02 2.02 16 37 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.09 4.06 5.97 -2.39 -0.01 4.05 16 39 H 0.03 1.14 8.02 -2.38 -0.02 1.12 16 40 H 0.04 2.42 8.05 -2.39 -0.02 2.40 16 41 H 0.04 2.32 7.86 -2.38 -0.02 2.30 16 42 H 0.38 21.03 7.05 -74.06 -0.52 20.51 16 43 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 44 H 0.05 1.92 7.39 -2.38 -0.02 1.90 16 45 H 0.08 3.52 7.40 -2.39 -0.02 3.50 16 46 H 0.12 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -67.70 373.64 -2.48 -70.19 By element: Atomic # 1 Polarization: 38.65 SS G_CDS: -0.31 Total: 38.34 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 4.79 Total: -4.95 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -7.03 Total: -93.33 kcal Atomic # 8 Polarization: -53.97 SS G_CDS: -1.97 Total: -55.93 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -67.70 -2.48 -70.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592150724.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.828 kcal (2) G-P(sol) polarization free energy of solvation -67.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds