Wall clock time and date at job start Tue Mar 31 2020 04:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47179 * 2 1 4 4 C 1.50701 * 109.46679 * 240.00439 * 2 1 3 5 5 O 1.21284 * 119.99984 * 253.91771 * 4 2 1 6 6 N 1.34777 * 120.00222 * 73.92693 * 4 2 1 7 7 C 1.46497 * 119.99958 * 3.69273 * 6 4 2 8 8 C 1.46503 * 120.00085 * 183.70039 * 6 4 2 9 9 C 1.50705 * 109.47068 * 89.99305 * 8 6 4 10 10 H 1.07991 * 120.00087 * 359.97438 * 9 8 6 11 11 C 1.37878 * 119.99796 * 180.02562 * 9 8 6 12 12 N 1.31520 * 119.99933 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00144 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47005 * 59.99343 * 13 11 9 15 15 H 1.48493 * 109.47188 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.46843 * 299.99665 * 13 11 9 17 17 N 1.46500 * 109.47333 * 120.00265 * 2 1 3 18 18 C 1.35307 * 125.86794 * 35.29242 * 17 2 1 19 19 C 1.35348 * 106.17561 * 180.18325 * 18 17 2 20 20 C 1.50695 * 126.75431 * 179.84820 * 19 18 17 21 21 N 1.46504 * 109.46896 * 124.71609 * 20 19 18 22 22 C 1.34949 * 126.03321 * 125.00535 * 21 20 19 23 23 C 1.35321 * 107.74297 * 179.97438 * 22 21 20 24 24 C 1.39867 * 107.92093 * 359.97438 * 23 22 21 25 25 N 1.30839 * 108.20176 * 359.74208 * 24 23 22 26 26 N 1.33771 * 106.49330 * 359.59511 * 19 18 17 27 27 N 1.28636 * 108.88923 * 0.25919 * 26 19 18 28 28 H 1.09000 * 109.47352 * 55.78063 * 1 2 3 29 29 H 1.08996 * 109.47527 * 175.78240 * 1 2 3 30 30 H 1.09006 * 109.46864 * 295.78616 * 1 2 3 31 31 H 1.09001 * 109.47223 * 84.70083 * 7 6 4 32 32 H 1.09010 * 109.47136 * 204.70098 * 7 6 4 33 33 H 1.09002 * 109.47491 * 324.69844 * 7 6 4 34 34 H 1.08998 * 109.47076 * 209.99735 * 8 6 4 35 35 H 1.08996 * 109.46737 * 329.99565 * 8 6 4 36 36 H 0.96994 * 119.99519 * 180.02562 * 12 11 9 37 37 H 1.08006 * 126.91615 * 0.04254 * 18 17 2 38 38 H 1.09005 * 109.46794 * 4.72125 * 20 19 18 39 39 H 1.08992 * 109.47818 * 244.71925 * 20 19 18 40 40 H 1.07999 * 126.12860 * 359.97438 * 22 21 20 41 41 H 1.08000 * 126.04118 * 179.97438 * 23 22 21 42 42 H 1.07993 * 125.90115 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2306 5 8 2.5086 -1.8218 -1.1372 6 7 1.9521 -0.1105 -2.4348 7 6 1.4520 1.2626 -2.5374 8 6 2.3651 -0.8317 -3.6413 9 6 1.1837 -1.5726 -4.2128 10 1 0.2217 -1.5127 -3.7257 11 6 1.3314 -2.3279 -5.3568 12 7 2.5031 -2.4013 -5.9496 13 14 -0.1331 -3.2457 -6.0656 14 1 -1.2044 -2.2771 -6.4108 15 1 0.2856 -3.9768 -7.2884 16 1 -0.6446 -4.2124 -5.0611 17 7 2.0184 -0.6907 1.1961 18 6 1.4389 -1.7622 1.7850 19 6 2.2124 -2.0702 2.8521 20 6 1.9874 -3.1893 3.8359 21 7 3.1826 -4.0345 3.8957 22 6 3.8789 -4.3472 5.0085 23 6 4.9078 -5.1455 4.6405 24 6 4.8374 -5.3273 3.2555 25 7 3.8002 -4.6665 2.8088 26 7 3.2190 -1.1891 2.8584 27 7 3.0751 -0.3853 1.8645 28 1 -0.3634 0.5779 -0.8498 29 1 -0.3634 -1.0248 -0.0756 30 1 -0.3633 0.4471 0.9254 31 1 2.2685 1.9613 -2.3550 32 1 1.0480 1.4286 -3.5362 33 1 0.6672 1.4198 -1.7974 34 1 2.7400 -0.1218 -4.3786 35 1 3.1519 -1.5423 -3.3884 36 1 2.6068 -2.9323 -6.7546 37 1 0.5388 -2.2684 1.4687 38 1 1.1346 -3.7881 3.5162 39 1 1.7884 -2.7713 4.8226 40 1 3.6552 -4.0192 6.0129 41 1 5.6518 -5.5677 5.2998 42 1 5.5190 -5.9148 2.6585 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603189912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:35:24 Heat of formation + Delta-G solvation = 131.350695 kcal Electronic energy + Delta-G solvation = -26402.260760 eV Core-core repulsion = 22614.363330 eV Total energy + Delta-G solvation = -3787.897430 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.42245 -41.89877 -41.00341 -36.89334 -36.60316 -35.08645 -34.67283 -32.08407 -31.92196 -30.78796 -29.72083 -27.83955 -27.55539 -26.17151 -25.06977 -23.11644 -22.84960 -21.89054 -21.53969 -20.45732 -18.73736 -18.55953 -18.49954 -17.90987 -17.12051 -16.77718 -16.48346 -16.32003 -16.12789 -15.73708 -15.11891 -14.91186 -14.74158 -14.49658 -14.32152 -14.23087 -13.72140 -13.67439 -13.54541 -13.42551 -13.24990 -13.08863 -13.00851 -12.73969 -12.62611 -12.52134 -12.23477 -11.95144 -11.77229 -11.64741 -11.46622 -10.69867 -10.67867 -10.43847 -10.24958 -9.58939 -9.45290 -8.26602 -6.42313 0.42241 1.01724 1.18647 1.24033 1.35487 1.40279 1.46490 1.51499 1.94074 2.01996 2.16456 2.37518 3.04089 3.14490 3.28273 3.46023 3.59056 3.74263 3.86725 4.01088 4.14315 4.19175 4.27484 4.37889 4.50901 4.53096 4.64273 4.73284 4.78712 4.85399 4.87985 4.94434 4.98636 5.11525 5.14643 5.19370 5.42655 5.48723 5.72645 5.77692 5.97546 6.24563 6.49464 6.67081 6.85338 7.10369 7.30355 7.38161 8.81165 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.014071 B = 0.003387 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.440173 B = 8265.067109 C = 9380.718537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.130 3.870 3 H 0.159 0.841 4 C 0.488 3.512 5 O -0.587 6.587 6 N -0.595 5.595 7 C 0.060 3.940 8 C 0.260 3.740 9 C -0.543 4.543 10 H 0.064 0.936 11 C 0.005 3.995 12 N -0.931 5.931 13 Si 0.971 3.029 14 H -0.254 1.254 15 H -0.283 1.283 16 H -0.276 1.276 17 N -0.270 5.270 18 C -0.003 4.003 19 C -0.055 4.055 20 C 0.222 3.778 21 N -0.373 5.373 22 C 0.064 3.936 23 C -0.288 4.288 24 C 0.023 3.977 25 N -0.346 5.346 26 N -0.280 5.280 27 N -0.117 5.117 28 H 0.118 0.882 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.028 0.972 35 H -0.011 1.011 36 H 0.267 0.733 37 H 0.215 0.785 38 H 0.123 0.877 39 H 0.154 0.846 40 H 0.217 0.783 41 H 0.169 0.831 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.264 4.827 21.708 23.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.025 3.975 3 H 0.176 0.824 4 C 0.273 3.727 5 O -0.467 6.467 6 N -0.326 5.326 7 C -0.081 4.081 8 C 0.139 3.861 9 C -0.581 4.581 10 H 0.083 0.917 11 C -0.194 4.194 12 N -0.571 5.571 13 Si 0.794 3.206 14 H -0.178 1.178 15 H -0.209 1.209 16 H -0.202 1.202 17 N -0.062 5.062 18 C -0.155 4.155 19 C -0.194 4.194 20 C 0.099 3.901 21 N -0.156 5.156 22 C -0.082 4.082 23 C -0.317 4.317 24 C -0.163 4.163 25 N -0.168 5.168 26 N -0.147 5.147 27 N -0.095 5.095 28 H 0.136 0.864 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.124 0.876 34 H 0.046 0.954 35 H 0.008 0.992 36 H 0.076 0.924 37 H 0.232 0.768 38 H 0.141 0.859 39 H 0.171 0.829 40 H 0.234 0.766 41 H 0.187 0.813 42 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -7.526 5.619 20.621 22.660 hybrid contribution -0.146 -1.636 -0.769 1.813 sum -7.672 3.984 19.853 21.653 Atomic orbital electron populations 1.22321 0.86129 1.05522 1.07350 1.21866 0.99832 0.97677 0.78114 0.82370 1.21015 0.79641 0.86337 0.85676 1.90763 1.47240 1.22306 1.86394 1.48063 1.62268 1.16128 1.06122 1.22315 1.00563 0.79950 1.05269 1.18822 0.94844 0.91286 0.81180 1.21658 0.96320 1.30188 1.09942 0.91744 1.25939 0.99120 0.97158 0.97210 1.70066 1.25144 1.41463 1.20395 0.85419 0.79023 0.78724 0.77387 1.17790 1.20860 1.20195 1.47089 1.16878 1.22056 1.20148 1.23727 1.04234 0.92600 0.94984 1.22255 0.95094 1.01056 1.01000 1.20197 0.84704 0.85349 0.99806 1.48788 1.23879 1.38091 1.04817 1.23281 0.93147 0.97844 0.93893 1.21842 1.04786 1.10141 0.94949 1.24297 0.96389 0.99158 0.96442 1.77468 1.12466 1.14626 1.12260 1.74894 1.21274 1.04357 1.14132 1.78202 1.04790 1.23000 1.03533 0.86389 0.91112 0.86700 0.90839 0.90169 0.87637 0.95398 0.99239 0.92424 0.76837 0.85866 0.82879 0.76621 0.81305 0.79557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.57 8.48 71.98 0.61 -1.96 16 2 C 0.13 3.46 2.82 44.25 0.12 3.58 16 3 H 0.16 3.27 7.48 -2.38 -0.02 3.25 16 4 C 0.49 19.70 6.97 87.66 0.61 20.31 16 5 O -0.59 -31.42 15.87 -3.04 -0.05 -31.46 16 6 N -0.60 -23.80 2.86 -851.10 -2.43 -26.23 16 7 C 0.06 1.52 9.86 127.77 1.26 2.78 16 8 C 0.26 13.82 5.16 85.63 0.44 14.26 16 9 C -0.54 -30.12 9.39 25.60 0.24 -29.88 16 10 H 0.06 3.40 7.81 -2.92 -0.02 3.38 16 11 C 0.00 0.27 5.46 84.65 0.46 0.73 16 12 N -0.93 -56.43 13.29 21.45 0.28 -56.15 16 13 Si 0.97 43.68 29.54 68.60 2.03 45.70 16 14 H -0.25 -10.45 7.11 99.48 0.71 -9.74 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 17 N -0.27 -8.39 2.85 -330.73 -0.94 -9.33 16 18 C 0.00 -0.08 10.40 83.49 0.87 0.79 16 19 C -0.05 -1.54 6.69 41.59 0.28 -1.26 16 20 C 0.22 4.23 7.08 85.63 0.61 4.84 16 21 N -0.37 -9.58 3.67 -351.79 -1.29 -10.87 16 22 C 0.06 1.25 11.45 83.54 0.96 2.21 16 23 C -0.29 -6.30 10.80 21.99 0.24 -6.06 16 24 C 0.02 0.65 12.03 85.24 1.02 1.68 16 25 N -0.35 -12.00 12.41 -57.03 -0.71 -12.71 16 26 N -0.28 -9.88 12.41 -48.61 -0.60 -10.48 16 27 N -0.12 -4.25 13.17 37.02 0.49 -3.77 16 28 H 0.12 1.55 5.80 -2.39 -0.01 1.54 16 29 H 0.07 1.33 7.40 -2.39 -0.02 1.32 16 30 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.08 2.13 8.03 -2.38 -0.02 2.11 16 33 H 0.11 1.71 4.56 -2.39 -0.01 1.70 16 34 H 0.03 1.50 8.07 -2.39 -0.02 1.49 16 35 H -0.01 -0.67 7.37 -2.39 -0.02 -0.69 16 36 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 37 H 0.21 4.40 7.43 -2.91 -0.02 4.38 16 38 H 0.12 1.77 8.12 -2.38 -0.02 1.75 16 39 H 0.15 1.53 8.07 -2.39 -0.02 1.51 16 40 H 0.22 1.96 8.06 -2.91 -0.02 1.93 16 41 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 42 H 0.19 4.56 8.06 -2.91 -0.02 4.54 16 Total: -1.00 -94.15 362.87 5.54 -88.61 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 1.04 Total: 14.68 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: 7.72 Total: 12.01 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -5.20 Total: -129.54 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.05 Total: -31.46 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -94.15 5.54 -88.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603189912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.964 kcal (2) G-P(sol) polarization free energy of solvation -94.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds