Wall clock time and date at job start Tue Mar 31 2020 04:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47135 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47061 * 119.99902 * 9 7 5 12 12 H 1.48503 * 109.47075 * 240.00004 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 N 1.46491 * 109.46957 * 179.72354 * 15 13 3 17 17 C 1.35263 * 125.76258 * 124.99883 * 16 15 13 18 18 C 1.36444 * 106.04648 * 179.97438 * 17 16 15 19 19 C 1.48513 * 126.90010 * 179.97438 * 18 17 16 20 20 C 1.40815 * 126.03106 * 180.02562 * 19 18 17 21 21 C 1.35111 * 107.84480 * 180.02562 * 20 19 18 22 22 N 1.35021 * 107.96662 * 359.97438 * 21 20 19 23 23 C 1.46496 * 125.93002 * 179.97438 * 22 21 20 24 24 N 1.31579 * 126.03107 * 359.69434 * 19 18 17 25 25 N 1.34479 * 106.20315 * 0.02562 * 18 17 16 26 26 N 1.28614 * 108.79574 * 359.72873 * 25 18 17 27 27 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 28 28 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 29 29 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 31 31 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 32 32 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 33 33 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 34 34 H 0.96991 * 119.99957 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 36 36 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 37 37 H 1.08002 * 126.97838 * 359.96553 * 17 16 15 38 38 H 1.08000 * 126.07868 * 359.97438 * 20 19 18 39 39 H 1.07994 * 126.01557 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.47349 * 89.99898 * 23 22 21 41 41 H 1.09002 * 109.47494 * 210.00362 * 23 22 21 42 42 H 1.08998 * 109.47438 * 329.99825 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1272 -3.6172 9 14 5.9135 2.0962 -3.4170 10 1 6.6009 1.2403 -2.4169 11 1 5.9206 1.4179 -4.7380 12 1 6.6217 3.3970 -3.5247 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 7 2.3200 2.2001 3.5857 17 6 1.4886 2.5314 4.5999 18 6 2.1930 3.3802 5.4030 19 6 1.7172 4.0255 6.6532 20 6 2.4607 4.9002 7.4686 21 6 1.6761 5.2669 8.5056 22 7 0.4815 4.6545 8.3610 23 6 -0.6627 4.7772 9.2675 24 7 0.5245 3.8857 7.1909 25 7 3.4042 3.5160 4.8347 26 7 3.4434 2.8003 3.7668 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5818 1.6876 -2.0285 33 1 2.0956 3.1410 -1.1385 34 1 3.6759 3.5175 -4.4431 35 1 0.9499 1.0100 2.5343 36 1 2.6281 0.4167 2.5258 37 1 0.4732 2.1929 4.7445 38 1 3.4777 5.2203 7.2963 39 1 1.9554 5.9326 9.3088 40 1 -1.2913 5.6087 8.9488 41 1 -1.2428 3.8546 9.2474 42 1 -0.3055 4.9595 10.2810 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603210068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:24 Heat of formation + Delta-G solvation = 156.297812 kcal Electronic energy + Delta-G solvation = -25685.144145 eV Core-core repulsion = 21898.328503 eV Total energy + Delta-G solvation = -3786.815642 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.08598 -41.16364 -39.24762 -35.57226 -34.62590 -33.62080 -32.80743 -31.09141 -30.26815 -30.04066 -29.13249 -26.96259 -26.57858 -23.32074 -23.16200 -23.11453 -21.97709 -20.73168 -20.16147 -18.65730 -17.59684 -17.17187 -16.78222 -16.43327 -15.82071 -15.58088 -15.26396 -15.05697 -14.66834 -14.50669 -14.10606 -13.89717 -13.59849 -13.41370 -13.04424 -13.00489 -12.82818 -12.65805 -12.19664 -12.09031 -11.77571 -11.47574 -11.28221 -11.07832 -10.97710 -10.85816 -10.64359 -10.61105 -10.50795 -10.17187 -9.89489 -9.67326 -9.09131 -8.98141 -8.46469 -8.43377 -7.84116 -6.07615 -4.12392 1.32897 1.82401 2.17273 2.26516 2.37441 3.07227 3.30008 3.37096 3.38629 3.42559 3.67505 4.01684 4.38328 4.44210 4.57081 4.62629 4.69493 4.78817 4.81795 4.89726 5.05797 5.07933 5.18267 5.27684 5.42216 5.45603 5.58152 5.58770 5.70930 5.84737 5.91258 6.09150 6.12992 6.32508 6.44867 6.56511 6.79866 6.92186 7.33129 7.40903 7.48697 7.88090 8.16284 8.19095 8.67168 8.74483 8.93723 9.53035 11.00720 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.020661 B = 0.002627 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.876728 B =10655.855415 C =11463.148883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 N -0.590 5.590 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.059 0.941 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.899 3.101 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.282 1.282 13 C 0.494 3.506 14 O -0.508 6.508 15 C 0.091 3.909 16 N -0.274 5.274 17 C -0.020 4.020 18 C 0.041 3.959 19 C 0.164 3.836 20 C -0.240 4.240 21 C 0.049 3.951 22 N -0.376 5.376 23 C 0.104 3.896 24 N -0.286 5.286 25 N -0.251 5.251 26 N -0.037 5.037 27 H 0.049 0.951 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.036 0.964 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.194 0.806 38 H 0.155 0.845 39 H 0.177 0.823 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.720 -4.071 23.084 25.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.024 4.024 3 N -0.323 5.323 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.727 3.273 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.208 1.208 13 C 0.276 3.724 14 O -0.383 6.383 15 C -0.034 4.034 16 N -0.066 5.066 17 C -0.173 4.173 18 C -0.097 4.097 19 C -0.001 4.001 20 C -0.269 4.269 21 C -0.095 4.095 22 N -0.160 5.160 23 C -0.038 4.038 24 N -0.111 5.111 25 N -0.120 5.120 26 N -0.017 5.017 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.211 0.789 38 H 0.173 0.827 39 H 0.194 0.806 40 H 0.093 0.907 41 H 0.107 0.893 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.356 -3.646 22.323 24.877 hybrid contribution 0.470 -0.022 -0.030 0.471 sum -9.887 -3.668 22.293 24.662 Atomic orbital electron populations 1.22248 0.96480 1.01747 1.02476 1.21530 0.93693 0.83957 1.03180 1.48245 1.63523 1.13314 1.07253 1.19345 0.96612 0.93648 0.77461 1.21440 0.96750 1.32095 1.06329 0.92260 1.24937 0.97961 0.94801 0.96381 1.69936 1.35692 1.33333 1.14368 0.86424 0.84501 0.78175 0.78243 1.19697 1.20983 1.20807 1.19876 0.80370 0.87499 0.84608 1.90814 1.43936 1.17280 1.86225 1.22182 1.04738 0.92192 0.84271 1.46772 1.09986 1.32004 1.17836 1.23479 0.99543 1.03504 0.90744 1.18904 0.92709 1.01917 0.96134 1.19125 0.91444 0.96865 0.92705 1.21524 1.02753 1.05631 0.97000 1.22480 0.86212 0.99797 1.01057 1.48401 1.11718 1.36470 1.19362 1.21846 0.86670 1.03974 0.91289 1.77477 1.19123 1.17021 0.97510 1.75312 1.17886 1.16289 1.02510 1.78493 1.05358 1.06052 1.11800 0.93228 0.91693 0.91788 0.89233 0.91757 0.94634 0.93796 0.92710 0.85327 0.85630 0.78929 0.82704 0.80606 0.90746 0.89301 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 10.24 37.16 0.38 -1.53 16 2 C 0.10 1.38 5.94 -4.04 -0.02 1.36 16 3 N -0.59 -11.56 2.46 -175.06 -0.43 -11.99 16 4 C 0.25 6.26 5.16 -5.20 -0.03 6.23 16 5 C -0.53 -14.73 9.39 -34.44 -0.32 -15.05 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 9 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.49 9.77 7.69 -10.98 -0.08 9.69 16 14 O -0.51 -12.96 15.26 5.55 0.08 -12.88 16 15 C 0.09 1.24 5.48 -5.20 -0.03 1.21 16 16 N -0.27 -4.46 3.19 -62.17 -0.20 -4.66 16 17 C -0.02 -0.28 11.53 -16.69 -0.19 -0.48 16 18 C 0.04 0.67 7.15 -83.12 -0.59 0.08 16 19 C 0.16 2.40 7.13 -82.76 -0.59 1.81 16 20 C -0.24 -2.98 10.77 -39.72 -0.43 -3.40 16 21 C 0.05 0.45 11.47 -17.26 -0.20 0.25 16 22 N -0.38 -3.72 4.01 -68.20 -0.27 -4.00 16 23 C 0.10 0.51 11.46 59.84 0.69 1.19 16 24 N -0.29 -3.82 12.59 33.44 0.42 -3.39 16 25 N -0.25 -4.78 12.44 33.07 0.41 -4.37 16 26 N -0.04 -0.73 12.11 60.35 0.73 0.00 16 27 H 0.05 0.49 7.24 -51.93 -0.38 0.12 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 31 H 0.06 0.67 6.43 -51.93 -0.33 0.33 16 32 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.13 1.17 7.14 -51.93 -0.37 0.80 16 36 H 0.13 1.38 7.40 -51.93 -0.38 0.99 16 37 H 0.19 1.98 8.06 -52.49 -0.42 1.55 16 38 H 0.16 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.18 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 41 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 LS Contribution 367.84 15.07 5.54 5.54 Total: -1.00 -39.12 367.84 -5.13 -44.25 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -5.62 Total: -2.76 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -1.52 Total: 3.02 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 1.40 Total: -54.15 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.08 Total: -12.88 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -39.12 -5.13 -44.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603210068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.544 kcal (2) G-P(sol) polarization free energy of solvation -39.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds