Wall clock time and date at job start Tue Mar 31 2020 04:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47135 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47061 * 119.99902 * 9 7 5 12 12 H 1.48503 * 109.47075 * 240.00004 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 N 1.46491 * 109.46957 * 179.72354 * 15 13 3 17 17 C 1.35263 * 125.76258 * 124.99883 * 16 15 13 18 18 C 1.36444 * 106.04648 * 179.97438 * 17 16 15 19 19 C 1.48513 * 126.90010 * 179.97438 * 18 17 16 20 20 C 1.40815 * 126.03106 * 180.02562 * 19 18 17 21 21 C 1.35111 * 107.84480 * 180.02562 * 20 19 18 22 22 N 1.35021 * 107.96662 * 359.97438 * 21 20 19 23 23 C 1.46496 * 125.93002 * 179.97438 * 22 21 20 24 24 N 1.31579 * 126.03107 * 359.69434 * 19 18 17 25 25 N 1.34479 * 106.20315 * 0.02562 * 18 17 16 26 26 N 1.28614 * 108.79574 * 359.72873 * 25 18 17 27 27 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 28 28 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 29 29 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 31 31 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 32 32 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 33 33 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 34 34 H 0.96991 * 119.99957 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 36 36 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 37 37 H 1.08002 * 126.97838 * 359.96553 * 17 16 15 38 38 H 1.08000 * 126.07868 * 359.97438 * 20 19 18 39 39 H 1.07994 * 126.01557 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.47349 * 89.99898 * 23 22 21 41 41 H 1.09002 * 109.47494 * 210.00362 * 23 22 21 42 42 H 1.08998 * 109.47438 * 329.99825 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1272 -3.6172 9 14 5.9135 2.0962 -3.4170 10 1 6.6009 1.2403 -2.4169 11 1 5.9206 1.4179 -4.7380 12 1 6.6217 3.3970 -3.5247 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 7 2.3200 2.2001 3.5857 17 6 1.4886 2.5314 4.5999 18 6 2.1930 3.3802 5.4030 19 6 1.7172 4.0255 6.6532 20 6 2.4607 4.9002 7.4686 21 6 1.6761 5.2669 8.5056 22 7 0.4815 4.6545 8.3610 23 6 -0.6627 4.7772 9.2675 24 7 0.5245 3.8857 7.1909 25 7 3.4042 3.5160 4.8347 26 7 3.4434 2.8003 3.7668 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.5818 1.6876 -2.0285 33 1 2.0956 3.1410 -1.1385 34 1 3.6759 3.5175 -4.4431 35 1 0.9499 1.0100 2.5343 36 1 2.6281 0.4167 2.5258 37 1 0.4732 2.1929 4.7445 38 1 3.4777 5.2203 7.2963 39 1 1.9554 5.9326 9.3088 40 1 -1.2913 5.6087 8.9488 41 1 -1.2428 3.8546 9.2474 42 1 -0.3055 4.9595 10.2810 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603210068.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:24 Heat of formation + Delta-G solvation = 126.842915 kcal Electronic energy + Delta-G solvation = -25686.421405 eV Core-core repulsion = 21898.328503 eV Total energy + Delta-G solvation = -3788.092902 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.30301 -41.98396 -40.79727 -37.12202 -35.84769 -34.91604 -34.44615 -32.06880 -31.67339 -30.93776 -30.48811 -28.52737 -27.49117 -25.15809 -24.30376 -24.20322 -23.20246 -21.65700 -21.21691 -20.01802 -18.77900 -18.63215 -18.30830 -17.76219 -17.07088 -16.88422 -16.45334 -16.21882 -16.12815 -15.74268 -15.47105 -14.80606 -14.66237 -14.57861 -14.44984 -13.87639 -13.72736 -13.64079 -13.49309 -13.27247 -13.19473 -13.07187 -12.72656 -12.70148 -12.52430 -12.20341 -12.14222 -11.88800 -11.74537 -11.69168 -11.60701 -11.02844 -10.67094 -10.63185 -9.90019 -9.53336 -9.35574 -8.25442 -6.39137 0.31138 0.72669 1.17810 1.29331 1.33821 1.37687 1.48376 1.59521 1.61154 2.21119 2.29449 2.38639 3.04588 3.05948 3.34411 3.60096 3.69971 3.85364 3.90719 4.16225 4.18167 4.19352 4.42209 4.48843 4.52375 4.64976 4.68676 4.77997 4.79484 4.91744 4.96832 5.00091 5.07009 5.11725 5.19263 5.41378 5.46629 5.52990 5.54571 5.79507 6.02909 6.15315 6.60677 6.61391 6.71669 7.21324 7.35718 7.42031 8.82051 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.020661 B = 0.002627 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.876728 B =10655.855415 C =11463.148883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.091 3.909 3 N -0.593 5.593 4 C 0.264 3.736 5 C -0.540 4.540 6 H 0.054 0.946 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.965 3.035 10 H -0.267 1.267 11 H -0.266 1.266 12 H -0.286 1.286 13 C 0.484 3.516 14 O -0.580 6.580 15 C 0.101 3.899 16 N -0.275 5.275 17 C -0.002 4.002 18 C 0.025 3.975 19 C 0.135 3.865 20 C -0.277 4.277 21 C 0.074 3.926 22 N -0.370 5.370 23 C 0.092 3.908 24 N -0.306 5.306 25 N -0.282 5.282 26 N -0.091 5.091 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.029 0.971 33 H -0.007 1.007 34 H 0.267 0.733 35 H 0.186 0.814 36 H 0.161 0.839 37 H 0.237 0.763 38 H 0.147 0.853 39 H 0.224 0.776 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.315 -6.028 25.833 29.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.031 4.031 3 N -0.325 5.325 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.789 3.211 10 H -0.191 1.191 11 H -0.191 1.191 12 H -0.212 1.212 13 C 0.270 3.730 14 O -0.459 6.459 15 C -0.022 4.022 16 N -0.067 5.067 17 C -0.155 4.155 18 C -0.113 4.113 19 C -0.029 4.029 20 C -0.306 4.306 21 C -0.072 4.072 22 N -0.153 5.153 23 C -0.047 4.047 24 N -0.133 5.133 25 N -0.150 5.150 26 N -0.070 5.070 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.129 0.871 32 H 0.047 0.953 33 H 0.011 0.989 34 H 0.076 0.924 35 H 0.203 0.797 36 H 0.178 0.822 37 H 0.253 0.747 38 H 0.165 0.835 39 H 0.241 0.759 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.978 -5.677 25.074 28.362 hybrid contribution 0.822 0.631 -0.760 1.285 sum -11.156 -5.046 24.314 27.223 Atomic orbital electron populations 1.22201 0.94055 1.03928 1.02055 1.21955 0.95666 0.80564 1.04885 1.48220 1.63356 1.15390 1.05510 1.18722 0.95389 0.91421 0.80194 1.21737 0.97926 1.31842 1.06352 0.92753 1.25840 1.02236 0.94543 0.96606 1.70048 1.37655 1.34258 1.14879 0.85407 0.79216 0.77921 0.78518 1.19101 1.19127 1.21186 1.20912 0.78661 0.86917 0.86480 1.90785 1.46993 1.20616 1.87507 1.22448 1.08850 0.91271 0.79660 1.46974 1.09467 1.31784 1.18490 1.24118 1.00404 1.01826 0.89174 1.19395 0.92241 1.02501 0.97213 1.19171 0.92550 0.98257 0.92920 1.21690 1.03279 1.07028 0.98632 1.23085 0.85029 0.98512 1.00597 1.48866 1.13010 1.34950 1.18520 1.22302 0.85648 1.04743 0.92027 1.77358 1.18515 1.18324 0.99064 1.75217 1.19880 1.16937 1.02941 1.78421 1.07608 1.08149 1.12863 0.91355 0.94503 0.88188 0.90554 0.87080 0.95263 0.98891 0.92444 0.79662 0.82200 0.74670 0.83522 0.75916 0.89506 0.88919 0.85880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 10.24 71.98 0.74 -2.41 16 2 C 0.09 2.29 5.94 86.38 0.51 2.80 16 3 N -0.59 -23.32 2.46 -826.15 -2.03 -25.35 16 4 C 0.26 14.01 5.16 85.63 0.44 14.45 16 5 C -0.54 -31.18 9.39 25.60 0.24 -30.94 16 6 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.39 5.46 84.66 0.46 0.85 16 8 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 9 Si 0.96 45.95 29.54 68.60 2.03 47.98 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 13 C 0.48 19.23 7.69 87.66 0.67 19.90 16 14 O -0.58 -31.14 15.26 -3.04 -0.05 -31.18 16 15 C 0.10 2.46 5.48 85.64 0.47 2.93 16 16 N -0.27 -8.69 3.19 -350.61 -1.12 -9.80 16 17 C 0.00 -0.06 11.53 83.75 0.97 0.90 16 18 C 0.03 0.84 7.15 41.06 0.29 1.13 16 19 C 0.14 3.94 7.13 42.56 0.30 4.24 16 20 C -0.28 -6.86 10.77 22.18 0.24 -6.62 16 21 C 0.07 1.18 11.47 83.48 0.96 2.13 16 22 N -0.37 -6.35 4.01 -369.69 -1.48 -7.83 16 23 C 0.09 0.56 11.46 127.77 1.46 2.03 16 24 N -0.31 -7.73 12.59 -48.13 -0.61 -8.33 16 25 N -0.28 -11.24 12.44 -49.30 -0.61 -11.86 16 26 N -0.09 -3.74 12.11 37.02 0.45 -3.29 16 27 H 0.07 1.06 7.24 -2.39 -0.02 1.05 16 28 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 2.14 8.07 -2.39 -0.02 2.12 16 31 H 0.11 1.78 6.43 -2.39 -0.02 1.76 16 32 H 0.03 1.56 8.07 -2.39 -0.02 1.54 16 33 H -0.01 -0.44 7.42 -2.38 -0.02 -0.46 16 34 H 0.27 15.31 8.31 -92.72 -0.77 14.54 16 35 H 0.19 2.34 7.14 -2.38 -0.02 2.33 16 36 H 0.16 2.84 7.40 -2.39 -0.02 2.82 16 37 H 0.24 3.97 8.06 -2.91 -0.02 3.95 16 38 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 39 H 0.22 1.19 8.06 -2.91 -0.02 1.17 16 40 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 Total: -1.00 -95.83 367.84 5.66 -90.17 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 1.04 Total: 4.67 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 7.76 Total: 11.40 kcal Atomic # 7 Polarization: -117.92 SS G_CDS: -5.12 Total: -123.04 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.05 Total: -31.18 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -95.83 5.66 -90.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603210068.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.016 kcal (2) G-P(sol) polarization free energy of solvation -95.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds