Wall clock time and date at job start Tue Mar 31 2020 05:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47902 * 110.99729 * 2 1 4 4 C 1.53994 * 107.05320 * 145.84410 * 3 2 1 5 5 C 1.54596 * 105.14278 * 358.77954 * 4 3 2 6 6 O 1.42897 * 110.72479 * 96.39816 * 5 4 3 7 7 C 1.52999 * 110.72213 * 219.68196 * 5 4 3 8 8 N 1.46508 * 109.47123 * 179.97438 * 7 5 4 9 9 C 1.34776 * 120.00019 * 180.02562 * 8 7 5 10 10 O 1.21280 * 119.99679 * 359.97438 * 9 8 7 11 11 C 1.50693 * 119.99621 * 180.02562 * 9 8 7 12 12 C 1.50711 * 109.46903 * 179.97438 * 11 9 8 13 13 C 1.37636 * 120.12379 * 265.00043 * 12 11 9 14 14 C 1.38613 * 120.24451 * 180.02562 * 13 12 11 15 15 C 1.38654 * 120.50222 * 359.97364 * 14 13 12 16 16 C 1.37597 * 120.24899 * 0.02628 * 15 14 13 17 17 C 1.40697 * 120.12799 * 84.72374 * 12 11 9 18 18 C 1.41392 * 120.24168 * 359.97438 * 17 12 11 19 19 H 1.07996 * 120.00358 * 333.89363 * 18 17 12 20 20 C 1.39954 * 119.99989 * 153.89927 * 18 17 12 21 21 N 1.30823 * 119.99294 * 343.70941 * 20 18 17 22 22 Si 1.86797 * 120.00232 * 163.70747 * 20 18 17 23 23 H 1.48503 * 109.46974 * 90.00197 * 22 20 18 24 24 H 1.48496 * 109.46991 * 209.99838 * 22 20 18 25 25 H 1.48498 * 109.47146 * 330.00339 * 22 20 18 26 26 C 1.48530 * 111.00189 * 117.39961 * 2 1 3 27 27 H 1.08997 * 109.47494 * 59.87242 * 1 2 3 28 28 H 1.09006 * 109.47161 * 179.87177 * 1 2 3 29 29 H 1.08999 * 109.47034 * 299.86456 * 1 2 3 30 30 H 1.09002 * 109.91393 * 26.50026 * 3 2 1 31 31 H 1.08995 * 110.08279 * 265.28766 * 3 2 1 32 32 H 1.09004 * 110.30886 * 117.69211 * 4 3 2 33 33 H 1.08995 * 110.31059 * 239.85931 * 4 3 2 34 34 H 0.96705 * 113.99339 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.47520 * 299.99746 * 7 5 4 36 36 H 1.09002 * 109.47284 * 59.99704 * 7 5 4 37 37 H 0.96995 * 119.99410 * 0.02562 * 8 7 5 38 38 H 1.08998 * 109.47747 * 299.99340 * 11 9 8 39 39 H 1.08998 * 109.47704 * 60.00298 * 11 9 8 40 40 H 1.08002 * 119.87758 * 359.97438 * 13 12 11 41 41 H 1.08002 * 119.74979 * 179.97438 * 14 13 12 42 42 H 1.08002 * 119.87746 * 180.02562 * 15 14 13 43 43 H 1.07997 * 120.12383 * 179.97438 * 16 15 14 44 44 H 0.97005 * 119.99212 * 179.97438 * 21 20 18 45 45 H 1.09000 * 110.66632 * 318.71562 * 26 2 1 46 46 H 1.09001 * 110.66632 * 81.67520 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2982 1.3659 0.8266 5 6 3.4492 -0.0930 1.3153 6 8 4.3175 -0.8285 0.4511 7 6 3.9589 -0.1308 2.7574 8 7 4.0912 -1.5236 3.1922 9 6 4.5267 -1.8026 4.4368 10 8 4.8096 -0.9006 5.1966 11 6 4.6633 -3.2352 4.8838 12 6 5.1653 -3.2725 6.3043 13 6 6.5111 -3.4102 6.5580 14 6 6.9754 -3.4453 7.8635 15 6 6.0925 -3.3420 8.9276 16 6 4.7430 -3.2037 8.6975 17 6 4.2607 -3.1609 7.3761 18 6 2.8767 -3.0127 7.1275 19 1 2.5386 -2.5728 6.2010 20 6 1.9450 -3.4360 8.0821 21 7 2.3140 -4.2433 9.0431 22 14 0.1746 -2.8482 7.9842 23 1 -0.6159 -3.7941 7.1561 24 1 -0.4024 -2.7855 9.3510 25 1 0.1348 -1.4979 7.3675 26 6 2.0013 -0.6381 1.2311 27 1 -0.3634 0.5158 -0.8888 28 1 -0.3634 -1.0277 -0.0023 29 1 -0.3633 0.5117 0.8912 30 1 1.2758 2.0561 0.4573 31 1 2.2116 1.7001 -1.0202 32 1 4.1470 1.6454 0.2024 33 1 3.2136 2.0428 1.6767 34 1 4.4453 -1.7504 0.7138 35 1 4.9300 0.3611 2.8126 36 1 3.2522 0.3865 3.4063 37 1 3.8652 -2.2449 2.5843 38 1 3.6923 -3.7274 4.8282 39 1 5.3704 -3.7524 4.2353 40 1 7.2077 -3.4919 5.7367 41 1 8.0331 -3.5540 8.0534 42 1 6.4654 -3.3701 9.9408 43 1 4.0570 -3.1238 9.5278 44 1 1.6683 -4.5364 9.7050 45 1 1.4238 -0.3324 2.1034 46 1 2.0014 -1.7237 1.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762718002.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:38 Heat of formation + Delta-G solvation = -62.786286 kcal Electronic energy + Delta-G solvation = -26905.212635 eV Core-core repulsion = 23180.144386 eV Total energy + Delta-G solvation = -3725.068249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.19374 -38.95368 -37.32540 -36.24067 -33.93706 -33.61877 -31.99764 -31.55211 -29.47548 -29.20295 -27.44314 -26.34083 -25.05796 -24.08948 -21.64954 -20.92940 -20.59664 -20.47893 -19.37650 -17.54314 -17.12872 -16.57843 -16.01924 -15.63372 -15.46608 -15.17776 -14.99186 -14.53014 -14.42035 -13.97470 -13.67339 -13.58150 -13.39348 -13.11917 -12.86915 -12.60632 -12.41469 -12.30938 -11.89465 -11.77098 -11.75724 -11.58204 -11.44442 -11.16305 -11.06978 -10.99113 -10.96632 -10.70122 -10.40553 -10.14004 -9.48127 -9.38557 -9.22257 -9.15242 -8.83551 -8.71481 -7.30412 -7.28689 -6.73722 -4.34290 2.77754 2.95881 3.04977 3.09494 3.26432 3.29579 3.50253 3.69069 3.87215 3.92346 4.26890 4.32981 4.62869 4.66425 4.85475 5.05365 5.13772 5.14851 5.35639 5.38897 5.42002 5.50918 5.59129 5.61020 5.68566 5.77630 5.82571 5.85541 6.01714 6.13551 6.29393 6.42192 6.50189 6.52081 6.63453 6.69779 6.80379 7.08474 7.30356 7.42336 7.43083 7.63890 7.80209 7.94190 8.07383 8.14004 8.31917 8.64967 8.80399 8.91800 9.02164 10.20435 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013058 B = 0.003790 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.833862 B = 7386.577646 C = 9055.085425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.515 5.515 3 C 0.037 3.963 4 C -0.117 4.117 5 C 0.122 3.878 6 O -0.539 6.539 7 C 0.102 3.898 8 N -0.747 5.747 9 C 0.516 3.484 10 O -0.517 6.517 11 C -0.070 4.070 12 C -0.181 4.181 13 C -0.081 4.081 14 C -0.239 4.239 15 C -0.107 4.107 16 C -0.160 4.160 17 C 0.129 3.871 18 C -0.457 4.457 19 H 0.073 0.927 20 C 0.077 3.923 21 N -0.795 5.795 22 Si 0.901 3.099 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.263 1.263 26 C 0.009 3.991 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.047 0.953 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.374 0.626 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.392 0.608 38 H 0.096 0.904 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.117 0.883 44 H 0.279 0.721 45 H 0.059 0.941 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.323 5.697 -15.397 16.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.239 5.239 3 C -0.091 4.091 4 C -0.156 4.156 5 C 0.080 3.920 6 O -0.344 6.344 7 C -0.023 4.023 8 N -0.403 5.403 9 C 0.304 3.696 10 O -0.390 6.390 11 C -0.110 4.110 12 C -0.183 4.183 13 C -0.100 4.100 14 C -0.259 4.259 15 C -0.126 4.126 16 C -0.179 4.179 17 C 0.127 3.873 18 C -0.487 4.487 19 H 0.091 0.909 20 C -0.140 4.140 21 N -0.420 5.420 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.187 1.187 26 C -0.119 4.119 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.222 0.778 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.225 0.775 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.135 0.865 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.043 6.537 -15.395 17.000 hybrid contribution -1.377 -0.209 0.809 1.610 sum -4.420 6.328 -14.586 16.503 Atomic orbital electron populations 1.22557 0.87750 1.02417 1.00792 1.64713 1.08028 1.14819 1.36305 1.22872 0.95363 0.89983 1.00847 1.22403 0.98777 0.93840 1.00546 1.22248 0.88463 0.92979 0.88310 1.86588 1.67654 1.26960 1.53229 1.21871 1.02263 0.84855 0.93325 1.46094 1.71124 1.07152 1.15922 1.21273 0.75450 0.92902 0.79996 1.90691 1.47435 1.48352 1.52530 1.20269 1.02922 0.91573 0.96240 1.19046 0.93323 1.13999 0.91971 1.20307 0.94129 1.00224 0.95295 1.20312 0.97085 1.15466 0.92997 1.20681 0.94316 1.01064 0.96491 1.21296 0.93507 1.05595 0.97490 1.17326 0.92443 0.86953 0.90593 1.19442 0.90663 1.35674 1.02876 0.90894 1.25867 1.01103 0.92793 0.94239 1.69821 1.36692 1.23478 1.12058 0.86429 0.82099 0.80349 0.78559 1.19552 1.20049 1.18659 1.23949 0.95334 1.00704 0.91938 0.91247 0.91112 0.95250 0.93504 0.89994 0.89298 0.89672 0.77767 0.90724 0.90851 0.77478 0.88559 0.90514 0.89735 0.89653 0.89582 0.86533 0.90974 0.92303 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.40 60.07 0.56 0.68 16 2 N -0.52 -5.21 5.55 -238.72 -1.33 -6.54 16 3 C 0.04 0.34 6.70 -2.75 -0.02 0.32 16 4 C -0.12 -1.10 6.27 -25.37 -0.16 -1.26 16 5 C 0.12 1.26 1.03 -88.76 -0.09 1.17 16 6 O -0.54 -5.78 13.12 -35.23 -0.46 -6.24 16 7 C 0.10 1.28 4.74 -4.04 -0.02 1.26 16 8 N -0.75 -9.99 5.18 -60.29 -0.31 -10.31 16 9 C 0.52 9.66 7.44 -10.99 -0.08 9.57 16 10 O -0.52 -12.18 16.03 5.56 0.09 -12.09 16 11 C -0.07 -1.33 5.18 -29.03 -0.15 -1.48 16 12 C -0.18 -4.32 4.43 -103.91 -0.46 -4.78 16 13 C -0.08 -1.87 9.66 -39.66 -0.38 -2.25 16 14 C -0.24 -5.58 10.05 -39.29 -0.39 -5.98 16 15 C -0.11 -2.62 10.02 -39.66 -0.40 -3.02 16 16 C -0.16 -4.27 8.69 -38.88 -0.34 -4.60 16 17 C 0.13 3.43 5.56 -106.83 -0.59 2.84 16 18 C -0.46 -11.90 8.14 -37.74 -0.31 -12.21 16 19 H 0.07 1.84 6.67 -52.49 -0.35 1.49 16 20 C 0.08 1.93 5.16 -17.34 -0.09 1.84 16 21 N -0.79 -20.41 10.96 55.55 0.61 -19.81 16 22 Si 0.90 18.68 29.59 -169.99 -5.03 13.65 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 24 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 26 C 0.01 0.09 5.42 -1.90 -0.01 0.08 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.03 0.25 8.00 -51.93 -0.42 -0.17 16 30 H 0.05 0.38 7.73 -51.93 -0.40 -0.02 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 0.83 8.08 -51.93 -0.42 0.41 16 33 H 0.08 0.72 7.85 -51.93 -0.41 0.31 16 34 H 0.37 2.98 7.73 45.56 0.35 3.33 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 37 H 0.39 3.91 7.26 -40.82 -0.30 3.61 16 38 H 0.10 1.78 7.08 -51.93 -0.37 1.41 16 39 H 0.08 1.20 8.05 -51.93 -0.42 0.78 16 40 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 42 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 43 H 0.12 3.20 6.20 -52.49 -0.33 2.87 16 44 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 45 H 0.06 0.63 7.84 -51.93 -0.41 0.23 16 46 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 373.43 15.07 5.63 5.63 Total: -1.00 -32.06 373.43 -10.13 -42.19 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -6.39 Total: 11.34 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -2.93 Total: -17.82 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -1.03 Total: -36.65 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.37 Total: -18.33 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.06 -10.13 -42.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762718002.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.595 kcal (2) G-P(sol) polarization free energy of solvation -32.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds