Wall clock time and date at job start Tue Mar 31 2020 05:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47902 * 110.99729 * 2 1 4 4 C 1.53994 * 107.05320 * 145.84410 * 3 2 1 5 5 C 1.54596 * 105.14278 * 358.77954 * 4 3 2 6 6 O 1.42897 * 110.72479 * 96.39816 * 5 4 3 7 7 C 1.52999 * 110.72213 * 219.68196 * 5 4 3 8 8 N 1.46508 * 109.47123 * 179.97438 * 7 5 4 9 9 C 1.34776 * 120.00019 * 180.02562 * 8 7 5 10 10 O 1.21280 * 119.99679 * 359.97438 * 9 8 7 11 11 C 1.50693 * 119.99621 * 180.02562 * 9 8 7 12 12 C 1.50711 * 109.46903 * 179.97438 * 11 9 8 13 13 C 1.37636 * 120.12379 * 265.00043 * 12 11 9 14 14 C 1.38613 * 120.24451 * 180.02562 * 13 12 11 15 15 C 1.38654 * 120.50222 * 359.97364 * 14 13 12 16 16 C 1.37597 * 120.24899 * 0.02628 * 15 14 13 17 17 C 1.40697 * 120.12799 * 84.72374 * 12 11 9 18 18 C 1.41392 * 120.24168 * 359.97438 * 17 12 11 19 19 H 1.07996 * 120.00358 * 333.89363 * 18 17 12 20 20 C 1.39954 * 119.99989 * 153.89927 * 18 17 12 21 21 N 1.30823 * 119.99294 * 343.70941 * 20 18 17 22 22 Si 1.86797 * 120.00232 * 163.70747 * 20 18 17 23 23 H 1.48503 * 109.46974 * 90.00197 * 22 20 18 24 24 H 1.48496 * 109.46991 * 209.99838 * 22 20 18 25 25 H 1.48498 * 109.47146 * 330.00339 * 22 20 18 26 26 C 1.48530 * 111.00189 * 117.39961 * 2 1 3 27 27 H 1.08997 * 109.47494 * 59.87242 * 1 2 3 28 28 H 1.09006 * 109.47161 * 179.87177 * 1 2 3 29 29 H 1.08999 * 109.47034 * 299.86456 * 1 2 3 30 30 H 1.09002 * 109.91393 * 26.50026 * 3 2 1 31 31 H 1.08995 * 110.08279 * 265.28766 * 3 2 1 32 32 H 1.09004 * 110.30886 * 117.69211 * 4 3 2 33 33 H 1.08995 * 110.31059 * 239.85931 * 4 3 2 34 34 H 0.96705 * 113.99339 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.47520 * 299.99746 * 7 5 4 36 36 H 1.09002 * 109.47284 * 59.99704 * 7 5 4 37 37 H 0.96995 * 119.99410 * 0.02562 * 8 7 5 38 38 H 1.08998 * 109.47747 * 299.99340 * 11 9 8 39 39 H 1.08998 * 109.47704 * 60.00298 * 11 9 8 40 40 H 1.08002 * 119.87758 * 359.97438 * 13 12 11 41 41 H 1.08002 * 119.74979 * 179.97438 * 14 13 12 42 42 H 1.08002 * 119.87746 * 180.02562 * 15 14 13 43 43 H 1.07997 * 120.12383 * 179.97438 * 16 15 14 44 44 H 0.97005 * 119.99212 * 179.97438 * 21 20 18 45 45 H 1.09000 * 110.66632 * 318.71562 * 26 2 1 46 46 H 1.09001 * 110.66632 * 81.67520 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3808 0.0000 4 6 3.2982 1.3659 0.8266 5 6 3.4492 -0.0930 1.3153 6 8 4.3175 -0.8285 0.4511 7 6 3.9589 -0.1308 2.7574 8 7 4.0912 -1.5236 3.1922 9 6 4.5267 -1.8026 4.4368 10 8 4.8096 -0.9006 5.1966 11 6 4.6633 -3.2352 4.8838 12 6 5.1653 -3.2725 6.3043 13 6 6.5111 -3.4102 6.5580 14 6 6.9754 -3.4453 7.8635 15 6 6.0925 -3.3420 8.9276 16 6 4.7430 -3.2037 8.6975 17 6 4.2607 -3.1609 7.3761 18 6 2.8767 -3.0127 7.1275 19 1 2.5386 -2.5728 6.2010 20 6 1.9450 -3.4360 8.0821 21 7 2.3140 -4.2433 9.0431 22 14 0.1746 -2.8482 7.9842 23 1 -0.6159 -3.7941 7.1561 24 1 -0.4024 -2.7855 9.3510 25 1 0.1348 -1.4979 7.3675 26 6 2.0013 -0.6381 1.2311 27 1 -0.3634 0.5158 -0.8888 28 1 -0.3634 -1.0277 -0.0023 29 1 -0.3633 0.5117 0.8912 30 1 1.2758 2.0561 0.4573 31 1 2.2116 1.7001 -1.0202 32 1 4.1470 1.6454 0.2024 33 1 3.2136 2.0428 1.6767 34 1 4.4453 -1.7504 0.7138 35 1 4.9300 0.3611 2.8126 36 1 3.2522 0.3865 3.4063 37 1 3.8652 -2.2449 2.5843 38 1 3.6923 -3.7274 4.8282 39 1 5.3704 -3.7524 4.2353 40 1 7.2077 -3.4919 5.7367 41 1 8.0331 -3.5540 8.0534 42 1 6.4654 -3.3701 9.9408 43 1 4.0570 -3.1238 9.5278 44 1 1.6683 -4.5364 9.7050 45 1 1.4238 -0.3324 2.1034 46 1 2.0014 -1.7237 1.1325 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762718002.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:37 Heat of formation + Delta-G solvation = -86.616771 kcal Electronic energy + Delta-G solvation = -26906.246002 eV Core-core repulsion = 23180.144386 eV Total energy + Delta-G solvation = -3726.101616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.22476 -40.28371 -39.04500 -37.13417 -35.49454 -35.16266 -33.47953 -32.58541 -31.33951 -30.18841 -28.72360 -27.55533 -26.76166 -25.09223 -22.82355 -22.55546 -21.89643 -21.49583 -20.88715 -19.09113 -18.52066 -17.70814 -17.30183 -17.01503 -16.54484 -16.40741 -16.25144 -16.00349 -15.56025 -15.33927 -15.14927 -14.72731 -14.53515 -14.38163 -14.28553 -13.89018 -13.53589 -13.44171 -13.36871 -13.08118 -12.89410 -12.75001 -12.66149 -12.56911 -12.49874 -12.49208 -12.17289 -12.13635 -11.84885 -11.31491 -11.21176 -11.01785 -11.00024 -10.77235 -10.10282 -9.45125 -9.21721 -9.15351 -8.59056 -6.28636 0.99965 1.13981 1.34950 1.46003 1.53073 1.82718 2.19054 2.25915 2.79306 2.93529 3.10437 3.44921 3.52762 3.76740 3.81006 4.14209 4.14740 4.24810 4.40094 4.43685 4.43966 4.47763 4.57876 4.63234 4.63608 4.71262 4.73601 4.76036 4.81044 4.83014 4.97707 4.99974 5.08560 5.12409 5.20651 5.37612 5.43942 5.56050 5.78418 5.78709 5.98999 6.04677 6.17585 6.22526 6.42729 6.57879 6.72826 6.75713 6.99931 7.12506 7.41535 8.37398 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.013058 B = 0.003790 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.833862 B = 7386.577646 C = 9055.085425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.527 5.527 3 C 0.037 3.963 4 C -0.120 4.120 5 C 0.132 3.868 6 O -0.547 6.547 7 C 0.106 3.894 8 N -0.722 5.722 9 C 0.519 3.481 10 O -0.573 6.573 11 C -0.070 4.070 12 C -0.187 4.187 13 C -0.092 4.092 14 C -0.244 4.244 15 C -0.118 4.118 16 C -0.195 4.195 17 C 0.096 3.904 18 C -0.482 4.482 19 H 0.072 0.928 20 C 0.037 3.963 21 N -0.827 5.827 22 Si 0.969 3.031 23 H -0.254 1.254 24 H -0.270 1.270 25 H -0.268 1.268 26 C 0.010 3.990 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.028 0.972 30 H 0.055 0.945 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.386 0.614 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.411 0.589 38 H 0.100 0.900 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.285 0.715 45 H 0.051 0.949 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.687 5.603 -17.652 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 N -0.251 5.251 3 C -0.091 4.091 4 C -0.158 4.158 5 C 0.090 3.910 6 O -0.355 6.355 7 C -0.019 4.019 8 N -0.378 5.378 9 C 0.308 3.692 10 O -0.451 6.451 11 C -0.109 4.109 12 C -0.189 4.189 13 C -0.110 4.110 14 C -0.263 4.263 15 C -0.137 4.137 16 C -0.215 4.215 17 C 0.094 3.906 18 C -0.512 4.512 19 H 0.091 0.909 20 C -0.178 4.178 21 N -0.453 5.453 22 Si 0.791 3.209 23 H -0.178 1.178 24 H -0.194 1.194 25 H -0.192 1.192 26 C -0.119 4.119 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.236 0.764 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.249 0.751 38 H 0.118 0.882 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.122 0.878 43 H 0.114 0.886 44 H 0.096 0.904 45 H 0.069 0.931 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.413 6.406 -17.706 19.136 hybrid contribution -1.154 -0.195 1.453 1.866 sum -4.567 6.211 -16.253 17.989 Atomic orbital electron populations 1.22597 0.86877 1.02790 1.01298 1.64731 1.08978 1.15400 1.36014 1.22909 0.95223 0.89771 1.01177 1.22458 0.99152 0.93262 1.00913 1.22115 0.88487 0.93794 0.86581 1.86584 1.67679 1.27965 1.53227 1.21892 1.01543 0.83759 0.94694 1.45773 1.68992 1.08474 1.14545 1.21150 0.75084 0.92128 0.80888 1.90676 1.50349 1.49611 1.54455 1.20297 1.03992 0.92303 0.94320 1.19554 0.93555 1.11946 0.93833 1.20759 0.94544 0.99398 0.96312 1.20723 0.98397 1.14213 0.92942 1.20947 0.93808 1.00825 0.98076 1.21312 0.94368 1.08339 0.97460 1.17730 0.93553 0.87933 0.91378 1.19610 0.91142 1.36804 1.03626 0.90942 1.26654 1.05089 0.92410 0.93617 1.69887 1.38273 1.24340 1.12796 0.85398 0.77101 0.79569 0.78861 1.17849 1.19431 1.19217 1.23930 0.94839 1.01200 0.91888 0.90168 0.90859 0.95307 0.92655 0.89446 0.89215 0.89060 0.76439 0.91733 0.92033 0.75140 0.88241 0.86599 0.86445 0.86775 0.87816 0.88596 0.90414 0.93097 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.40 127.69 1.20 1.39 16 2 N -0.53 -9.58 5.55 -909.17 -5.05 -14.63 16 3 C 0.04 0.59 6.70 86.45 0.58 1.17 16 4 C -0.12 -2.04 6.27 31.47 0.20 -1.85 16 5 C 0.13 2.50 1.03 -9.59 -0.01 2.49 16 6 O -0.55 -10.45 13.12 -148.98 -1.96 -12.40 16 7 C 0.11 2.55 4.74 86.38 0.41 2.96 16 8 N -0.72 -18.11 5.18 -463.06 -2.40 -20.51 16 9 C 0.52 18.93 7.44 87.65 0.65 19.58 16 10 O -0.57 -27.20 16.03 -3.03 -0.05 -27.25 16 11 C -0.07 -2.53 5.18 29.10 0.15 -2.37 16 12 C -0.19 -8.84 4.43 -19.40 -0.09 -8.93 16 13 C -0.09 -4.10 9.66 22.22 0.21 -3.89 16 14 C -0.24 -11.11 10.05 22.46 0.23 -10.88 16 15 C -0.12 -5.86 10.02 22.22 0.22 -5.63 16 16 C -0.20 -10.83 8.69 22.73 0.20 -10.63 16 17 C 0.10 5.24 5.56 -21.29 -0.12 5.12 16 18 C -0.48 -25.70 8.14 23.46 0.19 -25.51 16 19 H 0.07 3.72 6.67 -2.91 -0.02 3.70 16 20 C 0.04 1.86 5.16 85.26 0.44 2.30 16 21 N -0.83 -43.67 10.96 21.83 0.24 -43.43 16 22 Si 0.97 38.61 29.59 68.60 2.03 40.64 16 23 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 24 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 25 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 26 C 0.01 0.18 5.42 86.65 0.47 0.65 16 27 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.03 0.43 8.00 -2.39 -0.02 0.41 16 30 H 0.06 0.79 7.73 -2.39 -0.02 0.77 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.09 1.53 8.08 -2.38 -0.02 1.51 16 33 H 0.09 1.43 7.85 -2.39 -0.02 1.41 16 34 H 0.39 5.05 7.73 -74.05 -0.57 4.48 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.06 1.67 8.10 -2.39 -0.02 1.65 16 37 H 0.41 7.11 7.26 -92.71 -0.67 6.44 16 38 H 0.10 3.55 7.08 -2.39 -0.02 3.54 16 39 H 0.12 3.23 8.05 -2.39 -0.02 3.21 16 40 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 41 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 42 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 43 H 0.10 5.57 6.20 -2.91 -0.02 5.55 16 44 H 0.29 13.70 8.30 -92.70 -0.77 12.93 16 45 H 0.05 1.02 7.84 -2.39 -0.02 1.00 16 46 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -71.03 373.43 -2.50 -73.52 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: -0.25 Total: 38.08 kcal Atomic # 6 Polarization: -38.96 SS G_CDS: 4.94 Total: -34.03 kcal Atomic # 7 Polarization: -71.35 SS G_CDS: -7.21 Total: -78.56 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -2.00 Total: -39.65 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -71.03 -2.50 -73.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762718002.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.095 kcal (2) G-P(sol) polarization free energy of solvation -71.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds