Wall clock time and date at job start Tue Mar 31 2020 04:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99774 * 2 1 4 4 H 1.48501 * 109.47335 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47550 * 300.00015 * 3 2 1 6 6 H 1.48504 * 109.47161 * 59.99825 * 3 2 1 7 7 C 1.37873 * 120.00532 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00081 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99602 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47022 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00074 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00029 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00044 * 179.97438 * 11 10 9 14 14 N 1.46903 * 109.47020 * 173.78517 * 13 11 10 15 15 C 1.46847 * 111.00240 * 293.64394 * 14 13 11 16 16 C 1.53037 * 109.52614 * 174.16113 * 15 14 13 17 17 C 1.53115 * 109.27714 * 59.17826 * 16 15 14 18 18 O 1.42910 * 109.52339 * 62.25403 * 17 16 15 19 19 C 1.50695 * 109.52597 * 182.37714 * 17 16 15 20 20 C 1.38241 * 119.99613 * 29.60077 * 19 17 16 21 21 C 1.38234 * 119.99740 * 179.74692 * 20 19 17 22 22 C 1.38236 * 120.00182 * 0.52755 * 21 20 19 23 23 C 1.38235 * 119.99940 * 359.74793 * 22 21 20 24 24 C 1.38236 * 120.00462 * 209.87524 * 19 17 16 25 25 C 1.53120 * 109.16401 * 302.35118 * 17 16 15 26 26 C 1.46852 * 110.99953 * 169.43562 * 14 13 11 27 27 H 0.97005 * 120.00348 * 359.97438 * 1 2 3 28 28 H 1.08992 * 109.47504 * 59.99977 * 9 7 2 29 29 H 1.09003 * 109.47159 * 299.99632 * 9 7 2 30 30 H 0.97004 * 120.00105 * 0.02562 * 10 9 7 31 31 H 1.09004 * 109.46992 * 53.79011 * 13 11 10 32 32 H 1.08990 * 109.47422 * 293.78596 * 13 11 10 33 33 H 1.08998 * 109.45972 * 54.14007 * 15 14 13 34 34 H 1.09007 * 109.45271 * 294.17362 * 15 14 13 35 35 H 1.08995 * 109.50340 * 299.24030 * 16 15 14 36 36 H 1.08995 * 109.50312 * 179.12041 * 16 15 14 37 37 H 0.96694 * 114.00116 * 180.02562 * 18 17 16 38 38 H 1.08000 * 119.99871 * 359.97438 * 20 19 17 39 39 H 1.08002 * 120.00084 * 180.29979 * 21 20 19 40 40 H 1.07999 * 120.00154 * 179.76894 * 22 21 20 41 41 H 1.07998 * 120.00325 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.99734 * 0.02562 * 24 19 17 43 43 H 1.09003 * 109.50303 * 177.59966 * 25 17 16 44 44 H 1.09004 * 109.49850 * 297.71276 * 25 17 16 45 45 H 1.08994 * 109.46103 * 305.85745 * 26 14 13 46 46 H 1.09001 * 109.45946 * 65.82456 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7540 -4.8832 0.0000 12 8 0.5616 -5.1049 0.0009 13 6 2.7333 -6.0287 -0.0006 14 7 2.0051 -7.2956 0.1501 15 6 1.3732 -7.3854 1.4726 16 6 0.5072 -8.6453 1.5412 17 6 1.3834 -9.8753 1.2890 18 8 2.3749 -9.9736 2.3135 19 6 0.5262 -11.1147 1.2975 20 6 -0.7968 -11.0426 0.9032 21 6 -1.5818 -12.1804 0.9060 22 6 -1.0468 -13.3883 1.3133 23 6 0.2746 -13.4592 1.7129 24 6 1.0612 -12.3225 1.7048 25 6 2.0678 -9.7341 -0.0734 26 6 2.8886 -8.4427 -0.0952 27 1 -0.4851 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8902 29 1 0.6248 -2.5571 0.8897 30 1 3.1568 -3.4353 -0.0002 31 1 3.4315 -5.9101 0.8281 32 1 3.2837 -6.0356 -0.9413 33 1 0.7498 -6.5066 1.6376 34 1 2.1448 -7.4327 2.2411 35 1 -0.2729 -8.5924 0.7819 36 1 0.0508 -8.7198 2.5282 37 1 2.9671 -10.7318 2.2164 38 1 -1.2161 -10.0980 0.5896 39 1 -2.6141 -12.1251 0.5934 40 1 -1.6611 -14.2765 1.3190 41 1 0.6926 -14.4027 2.0315 42 1 2.0935 -12.3778 2.0173 43 1 2.7262 -10.5867 -0.2400 44 1 1.3122 -9.6984 -0.8582 45 1 3.3656 -8.3320 -1.0689 46 1 3.6528 -8.4850 0.6808 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767848989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:17 Heat of formation + Delta-G solvation = -57.181653 kcal Electronic energy + Delta-G solvation = -26400.202763 eV Core-core repulsion = 22675.377550 eV Total energy + Delta-G solvation = -3724.825214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.61903 -39.11274 -38.06182 -36.08123 -34.09163 -32.93610 -32.28761 -31.25310 -30.83191 -30.48745 -27.95929 -26.18893 -23.88391 -23.63410 -22.50610 -22.27546 -21.29824 -19.85863 -19.56861 -17.86246 -17.06096 -16.49474 -15.99317 -15.66453 -15.53078 -15.42070 -15.07059 -14.72393 -14.41383 -14.37017 -14.01985 -13.89676 -13.64804 -13.49249 -13.17969 -12.68329 -12.48986 -12.46210 -12.10474 -11.89734 -11.82194 -11.75028 -11.35480 -11.33783 -11.16391 -11.04640 -10.93140 -10.87967 -10.40749 -10.28958 -10.08185 -9.35991 -9.18206 -8.96513 -8.94506 -8.71646 -8.13230 -7.81626 -6.15349 -4.22019 1.06510 1.13865 3.24129 3.31143 3.34184 3.44400 3.48320 3.70130 4.07830 4.28363 4.29408 4.47162 4.50966 4.62971 4.73963 4.78100 4.89519 5.11235 5.16217 5.20737 5.27460 5.32485 5.36284 5.46820 5.50885 5.55051 5.62339 5.67111 5.68140 5.77608 5.80576 5.87223 5.96521 6.17780 6.18764 6.23888 6.30012 6.37331 6.72318 7.05430 7.19825 7.35923 7.39658 7.49271 7.54940 7.70452 7.99201 8.67698 8.81915 9.17280 9.44965 10.94869 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.032895 B = 0.002224 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.977215 B =12588.650315 C =13067.814460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.062 3.938 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.716 5.716 11 C 0.498 3.502 12 O -0.538 6.538 13 C 0.036 3.964 14 N -0.519 5.519 15 C 0.057 3.943 16 C -0.096 4.096 17 C 0.172 3.828 18 O -0.549 6.549 19 C -0.103 4.103 20 C -0.109 4.109 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.120 4.120 24 C -0.115 4.115 25 C -0.133 4.133 26 C 0.060 3.940 27 H 0.265 0.735 28 H 0.026 0.974 29 H 0.025 0.975 30 H 0.389 0.611 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.036 0.964 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.370 0.630 38 H 0.130 0.870 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.876 -26.907 2.129 27.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.366 5.366 11 C 0.282 3.718 12 O -0.416 6.416 13 C -0.095 4.095 14 N -0.243 5.243 15 C -0.071 4.071 16 C -0.133 4.133 17 C 0.131 3.869 18 O -0.355 6.355 19 C -0.104 4.104 20 C -0.127 4.127 21 C -0.135 4.135 22 C -0.142 4.142 23 C -0.138 4.138 24 C -0.133 4.133 25 C -0.171 4.171 26 C -0.068 4.068 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.221 0.779 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.055 0.945 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.217 0.783 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.136 0.864 43 H 0.087 0.913 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.164 -26.378 1.990 26.641 hybrid contribution 1.788 0.448 0.355 1.877 sum 4.952 -25.930 2.345 26.502 Atomic orbital electron populations 1.69986 1.06090 1.27150 1.49051 1.24959 0.94921 0.99460 0.94767 0.86367 0.79822 0.83009 0.77733 1.19657 1.20814 1.20818 1.21275 0.93294 0.90500 1.52972 0.91879 1.19073 0.88288 0.81931 0.97658 1.46466 1.11034 1.06145 1.72922 1.20307 0.89608 0.84032 0.77850 1.90638 1.16604 1.84592 1.49717 1.21988 0.95256 0.89627 1.02616 1.61580 1.31520 1.00284 1.30960 1.22128 0.97722 0.98999 0.88240 1.21633 0.97387 0.91511 1.02815 1.20126 0.87195 0.92144 0.87389 1.86638 1.46465 1.51785 1.50602 1.20531 0.95212 0.95320 0.99287 1.21217 0.93258 0.99059 0.99191 1.21206 0.99979 0.92738 0.99610 1.21171 0.95550 0.97889 0.99636 1.21090 0.94324 0.98192 1.00155 1.20851 0.99813 0.92302 1.00368 1.22213 1.00285 0.97252 0.97312 1.22006 0.93948 0.89990 1.00865 0.92526 0.95564 0.95656 0.77872 0.92600 0.88370 0.88777 0.94544 0.89251 0.90788 0.78276 0.85193 0.85894 0.86198 0.86155 0.86384 0.91321 0.89814 0.90689 0.94310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.54 -14.78 9.28 -34.44 -0.32 -15.09 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.70 5.43 -5.19 -0.03 6.67 16 10 N -0.72 -15.11 5.55 -61.47 -0.34 -15.45 16 11 C 0.50 9.96 7.36 -10.99 -0.08 9.88 16 12 O -0.54 -12.87 14.70 5.56 0.08 -12.79 16 13 C 0.04 0.53 5.45 -4.97 -0.03 0.51 16 14 N -0.52 -7.46 4.35 -236.11 -1.03 -8.49 16 15 C 0.06 0.84 4.98 -3.83 -0.02 0.82 16 16 C -0.10 -1.22 4.48 -26.65 -0.12 -1.34 16 17 C 0.17 1.79 0.85 -91.65 -0.08 1.72 16 18 O -0.55 -5.63 11.57 -35.23 -0.41 -6.04 16 19 C -0.10 -1.02 4.85 -104.62 -0.51 -1.52 16 20 C -0.11 -1.09 9.14 -39.58 -0.36 -1.45 16 21 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 22 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 23 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 24 C -0.12 -0.98 9.32 -39.58 -0.37 -1.34 16 25 C -0.13 -1.30 5.07 -26.65 -0.14 -1.43 16 26 C 0.06 0.66 5.32 -3.83 -0.02 0.64 16 27 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.39 7.01 8.32 -40.82 -0.34 6.67 16 31 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 32 H 0.10 1.23 7.98 -51.93 -0.41 0.82 16 33 H 0.09 1.69 6.05 -51.93 -0.31 1.37 16 34 H 0.04 0.54 7.76 -51.93 -0.40 0.14 16 35 H 0.09 1.15 6.38 -51.93 -0.33 0.82 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.37 2.41 7.33 45.56 0.33 2.74 16 38 H 0.13 1.27 6.11 -52.49 -0.32 0.95 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.12 0.74 6.49 -52.49 -0.34 0.40 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.07 0.74 8.01 -51.93 -0.42 0.33 16 46 H 0.04 0.42 7.76 -51.93 -0.40 0.02 16 LS Contribution 368.54 15.07 5.55 5.55 Total: -1.00 -33.54 368.54 -10.07 -43.61 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.29 Total: 7.65 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -3.36 Total: -4.48 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.63 Total: -49.43 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.33 Total: -18.83 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.54 -10.07 -43.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767848989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.575 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds