Wall clock time and date at job start Tue Mar 31 2020 04:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99774 * 2 1 4 4 H 1.48501 * 109.47335 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47550 * 300.00015 * 3 2 1 6 6 H 1.48504 * 109.47161 * 59.99825 * 3 2 1 7 7 C 1.37873 * 120.00532 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00081 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99602 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47022 * 180.02562 * 9 7 2 11 11 C 1.34775 * 120.00074 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00029 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00044 * 179.97438 * 11 10 9 14 14 N 1.46903 * 109.47020 * 173.78517 * 13 11 10 15 15 C 1.46847 * 111.00240 * 293.64394 * 14 13 11 16 16 C 1.53037 * 109.52614 * 174.16113 * 15 14 13 17 17 C 1.53115 * 109.27714 * 59.17826 * 16 15 14 18 18 O 1.42910 * 109.52339 * 62.25403 * 17 16 15 19 19 C 1.50695 * 109.52597 * 182.37714 * 17 16 15 20 20 C 1.38241 * 119.99613 * 29.60077 * 19 17 16 21 21 C 1.38234 * 119.99740 * 179.74692 * 20 19 17 22 22 C 1.38236 * 120.00182 * 0.52755 * 21 20 19 23 23 C 1.38235 * 119.99940 * 359.74793 * 22 21 20 24 24 C 1.38236 * 120.00462 * 209.87524 * 19 17 16 25 25 C 1.53120 * 109.16401 * 302.35118 * 17 16 15 26 26 C 1.46852 * 110.99953 * 169.43562 * 14 13 11 27 27 H 0.97005 * 120.00348 * 359.97438 * 1 2 3 28 28 H 1.08992 * 109.47504 * 59.99977 * 9 7 2 29 29 H 1.09003 * 109.47159 * 299.99632 * 9 7 2 30 30 H 0.97004 * 120.00105 * 0.02562 * 10 9 7 31 31 H 1.09004 * 109.46992 * 53.79011 * 13 11 10 32 32 H 1.08990 * 109.47422 * 293.78596 * 13 11 10 33 33 H 1.08998 * 109.45972 * 54.14007 * 15 14 13 34 34 H 1.09007 * 109.45271 * 294.17362 * 15 14 13 35 35 H 1.08995 * 109.50340 * 299.24030 * 16 15 14 36 36 H 1.08995 * 109.50312 * 179.12041 * 16 15 14 37 37 H 0.96694 * 114.00116 * 180.02562 * 18 17 16 38 38 H 1.08000 * 119.99871 * 359.97438 * 20 19 17 39 39 H 1.08002 * 120.00084 * 180.29979 * 21 20 19 40 40 H 1.07999 * 120.00154 * 179.76894 * 22 21 20 41 41 H 1.07998 * 120.00325 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.99734 * 0.02562 * 24 19 17 43 43 H 1.09003 * 109.50303 * 177.59966 * 25 17 16 44 44 H 1.09004 * 109.49850 * 297.71276 * 25 17 16 45 45 H 1.08994 * 109.46103 * 305.85745 * 26 14 13 46 46 H 1.09001 * 109.45946 * 65.82456 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7540 -4.8832 0.0000 12 8 0.5616 -5.1049 0.0009 13 6 2.7333 -6.0287 -0.0006 14 7 2.0051 -7.2956 0.1501 15 6 1.3732 -7.3854 1.4726 16 6 0.5072 -8.6453 1.5412 17 6 1.3834 -9.8753 1.2890 18 8 2.3749 -9.9736 2.3135 19 6 0.5262 -11.1147 1.2975 20 6 -0.7968 -11.0426 0.9032 21 6 -1.5818 -12.1804 0.9060 22 6 -1.0468 -13.3883 1.3133 23 6 0.2746 -13.4592 1.7129 24 6 1.0612 -12.3225 1.7048 25 6 2.0678 -9.7341 -0.0734 26 6 2.8886 -8.4427 -0.0952 27 1 -0.4851 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8902 29 1 0.6248 -2.5571 0.8897 30 1 3.1568 -3.4353 -0.0002 31 1 3.4315 -5.9101 0.8281 32 1 3.2837 -6.0356 -0.9413 33 1 0.7498 -6.5066 1.6376 34 1 2.1448 -7.4327 2.2411 35 1 -0.2729 -8.5924 0.7819 36 1 0.0508 -8.7198 2.5282 37 1 2.9671 -10.7318 2.2164 38 1 -1.2161 -10.0980 0.5896 39 1 -2.6141 -12.1251 0.5934 40 1 -1.6611 -14.2765 1.3190 41 1 0.6926 -14.4027 2.0315 42 1 2.0935 -12.3778 2.0173 43 1 2.7262 -10.5867 -0.2400 44 1 1.3122 -9.6984 -0.8582 45 1 3.3656 -8.3320 -1.0689 46 1 3.6528 -8.4850 0.6808 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767848989.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:16 Heat of formation + Delta-G solvation = -82.358728 kcal Electronic energy + Delta-G solvation = -26401.294523 eV Core-core repulsion = 22675.377550 eV Total energy + Delta-G solvation = -3725.916973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.48143 -40.49279 -39.06453 -37.09061 -36.03882 -34.34650 -33.77463 -32.04739 -31.61803 -31.41401 -29.67773 -27.62859 -25.10905 -24.53139 -24.03483 -23.18310 -22.14439 -21.32285 -20.72354 -18.93030 -18.54213 -17.63016 -17.37112 -16.91260 -16.63835 -16.58431 -16.26048 -16.11457 -15.66213 -15.35628 -15.21841 -14.97590 -14.59555 -14.49381 -14.21311 -14.13357 -13.95736 -13.79432 -13.31890 -13.12284 -12.99407 -12.86795 -12.75101 -12.56750 -12.32510 -12.24902 -12.20876 -12.08795 -11.87515 -11.45655 -11.38877 -10.86665 -10.81249 -10.60063 -9.82228 -9.78970 -9.62949 -9.22911 -8.29336 -6.45928 0.41130 0.49746 1.42717 1.44020 1.57518 1.82557 2.28060 2.47125 2.82786 3.04227 3.05432 3.37840 3.52606 3.71639 3.79669 3.97129 4.11772 4.15964 4.21171 4.27506 4.28682 4.37356 4.46792 4.49375 4.57410 4.60713 4.70545 4.78917 4.85333 4.93220 5.00900 5.07226 5.11997 5.14004 5.15930 5.24852 5.26078 5.50157 5.56845 5.62969 5.66641 5.71623 5.85458 5.97932 6.10409 6.17422 6.65910 6.82241 6.97494 7.23845 7.55734 8.83096 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.032895 B = 0.002224 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.977215 B =12588.650315 C =13067.814460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.269 3.731 10 N -0.711 5.711 11 C 0.493 3.507 12 O -0.584 6.584 13 C 0.050 3.950 14 N -0.538 5.538 15 C 0.064 3.936 16 C -0.095 4.095 17 C 0.183 3.817 18 O -0.560 6.560 19 C -0.116 4.116 20 C -0.131 4.131 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.119 4.119 25 C -0.128 4.128 26 C 0.060 3.940 27 H 0.268 0.732 28 H -0.014 1.014 29 H -0.016 1.016 30 H 0.408 0.592 31 H 0.081 0.919 32 H 0.131 0.869 33 H 0.051 0.949 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.388 0.612 38 H 0.118 0.882 39 H 0.133 0.867 40 H 0.141 0.859 41 H 0.146 0.854 42 H 0.143 0.857 43 H 0.098 0.902 44 H 0.070 0.930 45 H 0.093 0.907 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.131 -28.654 2.054 29.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.175 1.175 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.103 0.897 9 C 0.146 3.854 10 N -0.362 5.362 11 C 0.280 3.720 12 O -0.464 6.464 13 C -0.081 4.081 14 N -0.263 5.263 15 C -0.064 4.064 16 C -0.133 4.133 17 C 0.142 3.858 18 O -0.369 6.369 19 C -0.116 4.116 20 C -0.149 4.149 21 C -0.147 4.147 22 C -0.147 4.147 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.166 4.166 26 C -0.066 4.066 27 H 0.077 0.923 28 H 0.004 0.996 29 H 0.002 0.998 30 H 0.243 0.757 31 H 0.099 0.901 32 H 0.148 0.852 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.238 0.762 38 H 0.136 0.864 39 H 0.151 0.849 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.160 0.840 43 H 0.116 0.884 44 H 0.089 0.911 45 H 0.111 0.889 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.479 -28.174 1.912 28.972 hybrid contribution 0.698 0.891 0.401 1.201 sum 7.178 -27.283 2.313 28.306 Atomic orbital electron populations 1.70150 1.08302 1.28473 1.50101 1.26098 0.95806 1.04008 0.93925 0.85094 0.79107 0.77245 0.77651 1.17548 1.20444 1.20508 1.21663 0.94337 0.90578 1.52645 0.89747 1.18487 0.88677 0.84396 0.93844 1.46203 1.11122 1.05546 1.73357 1.21381 0.90063 0.84732 0.75822 1.90623 1.19219 1.85253 1.51305 1.21931 0.93631 0.87325 1.05213 1.61536 1.32992 1.01307 1.30470 1.21930 0.97397 0.98175 0.88868 1.21556 0.97454 0.92239 1.02015 1.19850 0.87071 0.91059 0.87789 1.86596 1.46746 1.53052 1.50524 1.20519 0.95039 0.95724 1.00349 1.21281 0.94018 0.99191 1.00393 1.21416 1.00560 0.92881 0.99872 1.21501 0.96161 0.98187 0.98817 1.21457 0.94189 0.99097 0.99321 1.21150 1.01119 0.91726 0.99642 1.22200 1.00275 0.97782 0.96344 1.22129 0.93664 0.88766 1.02084 0.92282 0.99636 0.99801 0.75686 0.90128 0.85167 0.93000 0.94442 0.90408 0.91608 0.76181 0.86415 0.84894 0.84083 0.83636 0.83967 0.88379 0.91108 0.88889 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.01 13.29 21.45 0.28 -56.73 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.99 42.75 29.54 68.60 2.03 44.78 16 4 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 6 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.55 -30.55 9.28 25.60 0.24 -30.31 16 8 H 0.08 4.19 7.60 -2.91 -0.02 4.17 16 9 C 0.27 15.07 5.43 85.63 0.46 15.53 16 10 N -0.71 -30.58 5.55 -466.79 -2.59 -33.17 16 11 C 0.49 20.20 7.36 87.66 0.65 20.85 16 12 O -0.58 -29.68 14.70 -3.04 -0.04 -29.73 16 13 C 0.05 1.38 5.45 85.56 0.47 1.85 16 14 N -0.54 -15.10 4.35 -900.93 -3.92 -19.02 16 15 C 0.06 1.97 4.98 86.33 0.43 2.40 16 16 C -0.09 -2.52 4.48 30.65 0.14 -2.39 16 17 C 0.18 3.63 0.85 -11.46 -0.01 3.62 16 18 O -0.56 -10.30 11.57 -148.98 -1.72 -12.03 16 19 C -0.12 -2.18 4.85 -19.87 -0.10 -2.27 16 20 C -0.13 -2.66 9.14 22.27 0.20 -2.46 16 21 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 22 C -0.13 -1.83 10.05 22.27 0.22 -1.61 16 23 C -0.12 -1.61 10.05 22.27 0.22 -1.39 16 24 C -0.12 -1.71 9.32 22.27 0.21 -1.51 16 25 C -0.13 -2.25 5.07 30.64 0.16 -2.09 16 26 C 0.06 1.18 5.32 86.32 0.46 1.63 16 27 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 28 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 29 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 30 H 0.41 14.31 8.32 -92.70 -0.77 13.54 16 31 H 0.08 1.90 8.12 -2.38 -0.02 1.88 16 32 H 0.13 2.84 7.98 -2.39 -0.02 2.82 16 33 H 0.05 2.01 6.05 -2.39 -0.01 2.00 16 34 H 0.04 1.11 7.76 -2.38 -0.02 1.10 16 35 H 0.08 2.20 6.38 -2.39 -0.02 2.19 16 36 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.39 3.76 7.33 -74.06 -0.54 3.21 16 38 H 0.12 2.56 6.11 -2.91 -0.02 2.54 16 39 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 41 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 42 H 0.14 1.25 6.49 -2.91 -0.02 1.24 16 43 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.09 1.50 8.01 -2.39 -0.02 1.48 16 46 H 0.05 0.89 7.76 -2.39 -0.02 0.87 16 Total: -1.00 -77.20 368.54 -1.84 -79.05 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: -0.31 Total: 26.46 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: 4.43 Total: 0.39 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -6.22 Total: -108.92 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -1.77 Total: -41.76 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -77.20 -1.84 -79.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767848989.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.310 kcal (2) G-P(sol) polarization free energy of solvation -77.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds