Wall clock time and date at job start Tue Mar 31 2020 04:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48504 * 109.47057 * 270.00291 * 3 2 1 5 5 H 1.48503 * 109.47090 * 29.99564 * 3 2 1 6 6 H 1.48495 * 109.47646 * 149.99803 * 3 2 1 7 7 C 1.37879 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99410 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00414 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47400 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00160 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00014 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99792 * 179.72210 * 11 10 9 14 14 N 1.46903 * 109.47026 * 173.99437 * 13 11 10 15 15 C 1.47015 * 111.00219 * 170.00191 * 14 13 11 16 16 C 1.53092 * 109.26176 * 182.39241 * 15 14 13 17 17 O 1.43021 * 109.25739 * 303.15120 * 16 15 14 18 18 C 1.43019 * 113.73617 * 58.66960 * 17 16 15 19 19 H 1.09001 * 109.50955 * 61.26365 * 18 17 16 20 20 C 1.52998 * 109.50257 * 181.39593 * 18 17 16 21 21 C 1.50695 * 109.47340 * 294.77819 * 20 18 17 22 22 C 1.38239 * 120.00490 * 269.73374 * 21 20 18 23 23 C 1.38232 * 120.00187 * 179.78491 * 22 21 20 24 24 C 1.38239 * 120.00182 * 0.46391 * 23 22 21 25 25 C 1.38233 * 119.99615 * 359.76611 * 24 23 22 26 26 C 1.38239 * 120.00397 * 0.02562 * 25 24 23 27 27 C 1.47014 * 110.99851 * 293.63449 * 14 13 11 28 28 H 0.97002 * 120.00431 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47123 * 59.99795 * 9 7 2 30 30 H 1.09007 * 109.46687 * 300.00136 * 9 7 2 31 31 H 0.97002 * 119.99685 * 359.97438 * 10 9 7 32 32 H 1.09003 * 109.47392 * 293.99341 * 13 11 10 33 33 H 1.09004 * 109.47150 * 53.99509 * 13 11 10 34 34 H 1.09000 * 109.50192 * 302.33126 * 15 14 13 35 35 H 1.09000 * 109.50256 * 62.45410 * 15 14 13 36 36 H 1.08991 * 109.51328 * 183.21716 * 16 15 14 37 37 H 1.09000 * 109.54160 * 63.10513 * 16 15 14 38 38 H 1.08993 * 109.47750 * 54.78284 * 20 18 17 39 39 H 1.09006 * 109.47005 * 174.78580 * 20 18 17 40 40 H 1.08001 * 119.99669 * 359.97438 * 22 21 20 41 41 H 1.08002 * 120.00263 * 180.24743 * 23 22 21 42 42 H 1.07997 * 120.00213 * 179.78940 * 24 23 22 43 43 H 1.07998 * 119.99809 * 180.02562 * 25 24 23 44 44 H 1.07997 * 120.00147 * 179.97438 * 26 25 24 45 45 H 1.08992 * 109.51264 * 297.54136 * 27 14 13 46 46 H 1.09000 * 109.50514 * 57.63239 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 5.3250 -2.8215 0.0020 12 8 6.1131 -1.8996 0.0025 13 6 5.8273 -4.2422 0.0082 14 7 7.2891 -4.2454 -0.1368 15 6 7.8393 -5.5878 0.1012 16 6 9.3659 -5.5333 -0.0008 17 8 9.7348 -5.0163 -1.2823 18 6 9.2164 -3.7099 -1.5470 19 1 9.6061 -3.0075 -0.8103 20 6 9.6386 -3.2675 -2.9495 21 6 11.1369 -3.1136 -2.9980 22 6 11.7168 -1.8956 -2.6962 23 6 13.0915 -1.7557 -2.7364 24 6 13.8857 -2.8312 -3.0877 25 6 13.3055 -4.0479 -3.3941 26 6 11.9311 -4.1890 -3.3497 27 6 7.6883 -3.7461 -1.4607 28 1 -0.4851 0.8400 0.0004 29 1 3.8745 -0.6800 0.8911 30 1 3.8751 -0.6803 -0.8889 31 1 3.3695 -3.3125 0.0010 32 1 5.5545 -4.7200 0.9492 33 1 5.3787 -4.7898 -0.8208 34 1 7.5529 -5.9272 1.0966 35 1 7.4490 -6.2788 -0.6460 36 1 9.7747 -6.5365 0.1183 37 1 9.7606 -4.8842 0.7809 38 1 9.3266 -4.0173 -3.6764 39 1 9.1676 -2.3134 -3.1866 40 1 11.0960 -1.0541 -2.4261 41 1 13.5448 -0.8051 -2.4968 42 1 14.9595 -2.7210 -3.1224 43 1 13.9260 -4.8883 -3.6681 44 1 11.4778 -5.1395 -3.5894 45 1 7.2957 -4.4076 -2.2328 46 1 7.2911 -2.7414 -1.6057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776607469.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:18 Heat of formation + Delta-G solvation = -52.164830 kcal Electronic energy + Delta-G solvation = -26211.347051 eV Core-core repulsion = 22486.739384 eV Total energy + Delta-G solvation = -3724.607668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.18397 -39.27753 -38.54680 -35.59505 -34.26865 -33.91139 -32.38660 -31.00119 -30.77968 -29.68245 -27.92743 -26.63406 -24.69928 -23.17125 -22.68106 -21.95363 -21.02946 -20.48140 -19.86463 -17.35834 -16.93811 -16.57803 -16.44467 -16.03391 -15.74893 -15.25403 -15.15524 -15.01916 -14.85417 -14.45058 -14.26585 -13.89208 -13.59669 -13.52513 -13.23421 -12.98709 -12.70928 -12.60728 -12.36929 -12.27894 -12.02779 -11.86567 -11.47239 -11.33573 -11.11554 -11.06019 -11.02786 -10.78028 -10.58960 -9.99312 -9.78936 -9.52142 -9.16472 -9.02962 -8.80773 -8.79915 -8.40467 -8.15531 -6.23886 -4.26350 1.22450 1.29417 3.19175 3.25258 3.31353 3.40164 3.43236 3.57137 3.73488 4.13864 4.31300 4.53692 4.72737 4.79795 4.85333 4.94052 4.94356 5.00777 5.04738 5.11238 5.12815 5.21500 5.30533 5.35274 5.37660 5.41209 5.45551 5.51283 5.54290 5.63670 5.72461 5.88119 5.89562 5.95909 5.99867 6.34144 6.38289 6.52763 6.70606 6.83154 6.88107 6.88972 7.04618 7.10913 7.20588 7.36729 8.11575 8.48837 8.72938 8.91822 9.36186 10.88012 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017219 B = 0.002618 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.750646 B =10693.657055 C =11950.275179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.222 3.778 10 N -0.708 5.708 11 C 0.500 3.500 12 O -0.540 6.540 13 C 0.036 3.964 14 N -0.517 5.517 15 C 0.017 3.983 16 C 0.068 3.932 17 O -0.380 6.380 18 C 0.105 3.895 19 H 0.070 0.930 20 C -0.075 4.075 21 C -0.073 4.073 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.128 4.128 25 C -0.124 4.124 26 C -0.100 4.100 27 C 0.022 3.978 28 H 0.268 0.732 29 H 0.025 0.975 30 H 0.020 0.980 31 H 0.396 0.604 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.122 0.878 45 H 0.038 0.962 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.555 -11.953 -4.784 26.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.097 0.903 9 C 0.100 3.900 10 N -0.357 5.357 11 C 0.284 3.716 12 O -0.418 6.418 13 C -0.095 4.095 14 N -0.242 5.242 15 C -0.111 4.111 16 C -0.010 4.010 17 O -0.299 6.299 18 C 0.047 3.953 19 H 0.088 0.912 20 C -0.113 4.113 21 C -0.074 4.074 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.146 4.146 25 C -0.142 4.142 26 C -0.118 4.118 27 C -0.106 4.106 28 H 0.078 0.922 29 H 0.043 0.957 30 H 0.037 0.963 31 H 0.229 0.771 32 H 0.121 0.879 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.140 0.860 45 H 0.056 0.944 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 24.233 -10.929 -4.555 26.971 hybrid contribution -0.664 0.057 -0.291 0.727 sum 23.570 -10.872 -4.846 26.405 Atomic orbital electron populations 1.69876 1.06222 1.27456 1.49377 1.24803 0.94798 0.99205 0.93854 0.86811 0.80598 0.83209 0.79037 1.19862 1.20890 1.18473 1.21091 0.88544 0.95210 1.53376 0.90281 1.19468 0.95186 0.78601 0.96721 1.46190 1.05632 1.11066 1.72810 1.20327 0.83087 0.90550 0.77617 1.90632 1.55328 1.45943 1.49937 1.22025 0.88411 0.95964 1.03128 1.61817 1.09176 1.22901 1.30327 1.22830 0.96574 0.89727 1.01966 1.22583 0.92917 0.99465 0.85999 1.87958 1.74382 1.32418 1.35115 1.22074 0.91762 0.85051 0.96448 0.91160 1.20640 0.91985 1.02726 0.95931 1.19756 0.95243 0.93591 0.98762 1.21127 0.95053 0.97273 1.00085 1.21114 0.93804 0.98804 1.00273 1.21115 0.99596 0.93430 1.00419 1.21127 0.95002 0.97448 1.00608 1.21036 0.93388 0.98295 0.99051 1.22933 0.96081 1.02804 0.88811 0.92241 0.95702 0.96259 0.77103 0.87889 0.92211 0.89580 0.93978 0.88584 0.92327 0.90140 0.89085 0.85990 0.86262 0.86464 0.86374 0.86036 0.94412 0.87802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 6 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.54 -14.78 9.83 -34.44 -0.34 -15.12 16 8 H 0.08 2.23 7.84 -52.49 -0.41 1.82 16 9 C 0.22 5.39 4.50 -5.20 -0.02 5.37 16 10 N -0.71 -13.94 5.55 -61.47 -0.34 -14.28 16 11 C 0.50 9.21 7.40 -10.99 -0.08 9.13 16 12 O -0.54 -11.89 14.68 5.56 0.08 -11.81 16 13 C 0.04 0.48 5.45 -4.98 -0.03 0.45 16 14 N -0.52 -6.97 4.42 -235.75 -1.04 -8.02 16 15 C 0.02 0.18 5.64 -3.71 -0.02 0.16 16 16 C 0.07 0.68 7.01 37.21 0.26 0.94 16 17 O -0.38 -4.51 9.98 -35.23 -0.35 -4.86 16 18 C 0.10 1.27 2.79 -26.68 -0.07 1.20 16 19 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 20 C -0.08 -0.79 5.06 -27.89 -0.14 -0.94 16 21 C -0.07 -0.79 4.97 -104.62 -0.52 -1.31 16 22 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 23 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 24 C -0.13 -1.15 10.05 -39.58 -0.40 -1.55 16 25 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 26 C -0.10 -1.02 9.41 -39.58 -0.37 -1.39 16 27 C 0.02 0.29 4.58 -3.71 -0.02 0.27 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 30 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 31 H 0.40 6.81 8.32 -40.82 -0.34 6.47 16 32 H 0.10 1.18 8.04 -51.93 -0.42 0.76 16 33 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 34 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 35 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 39 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 40 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 44 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.10 1.65 6.10 -51.93 -0.32 1.33 16 LS Contribution 375.51 15.07 5.66 5.66 Total: -1.00 -32.66 375.51 -10.25 -42.90 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.33 Total: 4.75 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -3.03 Total: -5.44 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: -0.61 Total: -47.84 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -0.27 Total: -16.66 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.66 -10.25 -42.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776607469.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.260 kcal (2) G-P(sol) polarization free energy of solvation -32.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds