Wall clock time and date at job start Tue Mar 31 2020 04:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48504 * 109.47057 * 270.00291 * 3 2 1 5 5 H 1.48503 * 109.47090 * 29.99564 * 3 2 1 6 6 H 1.48495 * 109.47646 * 149.99803 * 3 2 1 7 7 C 1.37879 * 120.00418 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99410 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00414 * 180.02562 * 7 2 1 10 10 N 1.46500 * 109.47400 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00160 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00014 * 359.97438 * 11 10 9 13 13 C 1.50696 * 119.99792 * 179.72210 * 11 10 9 14 14 N 1.46903 * 109.47026 * 173.99437 * 13 11 10 15 15 C 1.47015 * 111.00219 * 170.00191 * 14 13 11 16 16 C 1.53092 * 109.26176 * 182.39241 * 15 14 13 17 17 O 1.43021 * 109.25739 * 303.15120 * 16 15 14 18 18 C 1.43019 * 113.73617 * 58.66960 * 17 16 15 19 19 H 1.09001 * 109.50955 * 61.26365 * 18 17 16 20 20 C 1.52998 * 109.50257 * 181.39593 * 18 17 16 21 21 C 1.50695 * 109.47340 * 294.77819 * 20 18 17 22 22 C 1.38239 * 120.00490 * 269.73374 * 21 20 18 23 23 C 1.38232 * 120.00187 * 179.78491 * 22 21 20 24 24 C 1.38239 * 120.00182 * 0.46391 * 23 22 21 25 25 C 1.38233 * 119.99615 * 359.76611 * 24 23 22 26 26 C 1.38239 * 120.00397 * 0.02562 * 25 24 23 27 27 C 1.47014 * 110.99851 * 293.63449 * 14 13 11 28 28 H 0.97002 * 120.00431 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47123 * 59.99795 * 9 7 2 30 30 H 1.09007 * 109.46687 * 300.00136 * 9 7 2 31 31 H 0.97002 * 119.99685 * 359.97438 * 10 9 7 32 32 H 1.09003 * 109.47392 * 293.99341 * 13 11 10 33 33 H 1.09004 * 109.47150 * 53.99509 * 13 11 10 34 34 H 1.09000 * 109.50192 * 302.33126 * 15 14 13 35 35 H 1.09000 * 109.50256 * 62.45410 * 15 14 13 36 36 H 1.08991 * 109.51328 * 183.21716 * 16 15 14 37 37 H 1.09000 * 109.54160 * 63.10513 * 16 15 14 38 38 H 1.08993 * 109.47750 * 54.78284 * 20 18 17 39 39 H 1.09006 * 109.47005 * 174.78580 * 20 18 17 40 40 H 1.08001 * 119.99669 * 359.97438 * 22 21 20 41 41 H 1.08002 * 120.00263 * 180.24743 * 23 22 21 42 42 H 1.07997 * 120.00213 * 179.78940 * 24 23 22 43 43 H 1.07998 * 119.99809 * 180.02562 * 25 24 23 44 44 H 1.07997 * 120.00147 * 179.97438 * 26 25 24 45 45 H 1.08992 * 109.51264 * 297.54136 * 27 14 13 46 46 H 1.09000 * 109.50514 * 57.63239 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 5.3250 -2.8215 0.0020 12 8 6.1131 -1.8996 0.0025 13 6 5.8273 -4.2422 0.0082 14 7 7.2891 -4.2454 -0.1368 15 6 7.8393 -5.5878 0.1012 16 6 9.3659 -5.5333 -0.0008 17 8 9.7348 -5.0163 -1.2823 18 6 9.2164 -3.7099 -1.5470 19 1 9.6061 -3.0075 -0.8103 20 6 9.6386 -3.2675 -2.9495 21 6 11.1369 -3.1136 -2.9980 22 6 11.7168 -1.8956 -2.6962 23 6 13.0915 -1.7557 -2.7364 24 6 13.8857 -2.8312 -3.0877 25 6 13.3055 -4.0479 -3.3941 26 6 11.9311 -4.1890 -3.3497 27 6 7.6883 -3.7461 -1.4607 28 1 -0.4851 0.8400 0.0004 29 1 3.8745 -0.6800 0.8911 30 1 3.8751 -0.6803 -0.8889 31 1 3.3695 -3.3125 0.0010 32 1 5.5545 -4.7200 0.9492 33 1 5.3787 -4.7898 -0.8208 34 1 7.5529 -5.9272 1.0966 35 1 7.4490 -6.2788 -0.6460 36 1 9.7747 -6.5365 0.1183 37 1 9.7606 -4.8842 0.7809 38 1 9.3266 -4.0173 -3.6764 39 1 9.1676 -2.3134 -3.1866 40 1 11.0960 -1.0541 -2.4261 41 1 13.5448 -0.8051 -2.4968 42 1 14.9595 -2.7210 -3.1224 43 1 13.9260 -4.8883 -3.6681 44 1 11.4778 -5.1395 -3.5894 45 1 7.2957 -4.4076 -2.2328 46 1 7.2911 -2.7414 -1.6057 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776607469.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:17 Heat of formation + Delta-G solvation = -74.625163 kcal Electronic energy + Delta-G solvation = -26212.321005 eV Core-core repulsion = 22486.739384 eV Total energy + Delta-G solvation = -3725.581621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.22100 -40.32378 -39.63849 -36.69925 -36.00163 -34.74803 -34.40604 -31.72311 -31.59507 -31.03696 -29.44191 -27.66206 -25.82874 -24.17102 -23.66434 -23.40501 -21.88981 -21.46736 -21.34361 -19.16264 -17.85437 -17.65674 -17.51469 -17.37856 -16.84849 -16.66643 -16.13470 -16.01069 -15.91980 -15.77137 -15.39253 -15.22078 -14.84076 -14.51704 -14.30853 -14.22778 -14.13745 -13.93210 -13.54388 -13.25007 -13.06280 -12.97642 -12.87291 -12.70018 -12.38943 -12.22583 -11.94824 -11.91064 -11.79690 -11.66435 -11.47170 -10.92890 -10.89552 -10.49815 -9.91242 -9.76906 -9.55918 -9.38110 -8.40936 -6.47785 0.48152 0.55507 1.31559 1.34201 1.46604 1.74110 2.23475 2.27610 2.74784 2.83915 2.94485 3.02916 3.65238 3.88525 3.97117 3.98535 4.08637 4.11064 4.13552 4.22019 4.27492 4.31594 4.37246 4.40666 4.48034 4.57821 4.66743 4.69339 4.75293 4.78074 4.81046 4.86959 4.97949 5.02652 5.04973 5.19607 5.22737 5.25808 5.53016 5.61863 5.66469 5.76517 5.77394 5.94675 6.09620 6.16341 6.23207 6.53490 6.86890 7.15472 7.43827 8.73695 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.017219 B = 0.002618 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.750646 B =10693.657055 C =11950.275179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.026 3.974 3 Si 0.937 3.063 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.235 3.765 10 N -0.708 5.708 11 C 0.498 3.502 12 O -0.579 6.579 13 C 0.047 3.953 14 N -0.539 5.539 15 C 0.020 3.980 16 C 0.062 3.938 17 O -0.385 6.385 18 C 0.114 3.886 19 H 0.048 0.952 20 C -0.071 4.071 21 C -0.088 4.088 22 C -0.136 4.136 23 C -0.130 4.130 24 C -0.132 4.132 25 C -0.128 4.128 26 C -0.110 4.110 27 C 0.026 3.974 28 H 0.272 0.728 29 H 0.010 0.990 30 H 0.010 0.990 31 H 0.408 0.592 32 H 0.131 0.869 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.053 0.947 36 H 0.125 0.875 37 H 0.049 0.951 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.121 0.879 41 H 0.135 0.865 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.127 0.873 45 H 0.046 0.954 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.392 -13.367 -4.871 29.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.175 4.175 3 Si 0.761 3.239 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.584 4.584 8 H 0.078 0.922 9 C 0.111 3.889 10 N -0.359 5.359 11 C 0.285 3.715 12 O -0.459 6.459 13 C -0.083 4.083 14 N -0.265 5.265 15 C -0.107 4.107 16 C -0.014 4.014 17 O -0.304 6.304 18 C 0.056 3.944 19 H 0.066 0.934 20 C -0.108 4.108 21 C -0.088 4.088 22 C -0.154 4.154 23 C -0.148 4.148 24 C -0.149 4.149 25 C -0.146 4.146 26 C -0.128 4.128 27 C -0.102 4.102 28 H 0.081 0.919 29 H 0.028 0.972 30 H 0.028 0.972 31 H 0.244 0.756 32 H 0.149 0.851 33 H 0.102 0.898 34 H 0.124 0.876 35 H 0.071 0.929 36 H 0.143 0.857 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.139 0.861 41 H 0.153 0.847 42 H 0.159 0.841 43 H 0.158 0.842 44 H 0.145 0.855 45 H 0.064 0.936 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 26.075 -12.385 -4.641 29.237 hybrid contribution -1.200 0.421 -0.241 1.295 sum 24.874 -11.965 -4.881 28.030 Atomic orbital electron populations 1.69976 1.07660 1.28599 1.50715 1.25602 0.95544 1.02670 0.93645 0.85861 0.79227 0.79393 0.79423 1.18997 1.19858 1.18566 1.21301 0.89999 0.94567 1.52535 0.92190 1.19042 0.93249 0.81156 0.95475 1.46035 1.06790 1.09636 1.73391 1.21231 0.81925 0.92535 0.75779 1.90619 1.56087 1.47849 1.51309 1.21981 0.88667 0.92137 1.05537 1.61781 1.09163 1.25207 1.30301 1.22918 0.96367 0.88026 1.03413 1.22794 0.93064 1.00625 0.84934 1.87956 1.74464 1.31897 1.36082 1.21890 0.90896 0.84959 0.96627 0.93438 1.20596 0.92246 1.02773 0.95219 1.19838 0.95266 0.94082 0.99587 1.21282 0.95850 0.97395 1.00865 1.21390 0.93507 0.99917 1.00011 1.21451 1.00859 0.93081 0.99545 1.21442 0.94872 0.98342 0.99935 1.21190 0.94023 0.98307 0.99325 1.22804 0.96728 1.01290 0.89364 0.91857 0.97177 0.97237 0.75606 0.85106 0.89798 0.87573 0.92878 0.85718 0.93289 0.89427 0.89321 0.86143 0.84672 0.84119 0.84200 0.85529 0.93570 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.43 13.96 21.45 0.30 -55.13 16 2 C 0.03 1.45 5.47 84.66 0.46 1.92 16 3 Si 0.94 44.11 27.47 68.60 1.88 46.00 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.26 -12.25 6.54 99.48 0.65 -11.60 16 7 C -0.55 -29.96 9.83 25.60 0.25 -29.71 16 8 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 9 C 0.23 11.43 4.50 85.63 0.38 11.82 16 10 N -0.71 -27.55 5.55 -466.80 -2.59 -30.14 16 11 C 0.50 18.01 7.40 87.66 0.65 18.66 16 12 O -0.58 -25.68 14.68 -3.02 -0.04 -25.73 16 13 C 0.05 1.16 5.45 85.56 0.47 1.63 16 14 N -0.54 -13.64 4.42 -899.78 -3.98 -17.62 16 15 C 0.02 0.35 5.64 86.31 0.49 0.84 16 16 C 0.06 1.12 7.01 72.01 0.50 1.62 16 17 O -0.38 -8.62 9.98 -148.98 -1.49 -10.11 16 18 C 0.11 2.78 2.79 30.63 0.09 2.86 16 19 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 20 C -0.07 -1.51 5.06 29.85 0.15 -1.36 16 21 C -0.09 -1.89 4.97 -19.87 -0.10 -1.99 16 22 C -0.14 -2.88 9.70 22.27 0.22 -2.66 16 23 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 24 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16 25 C -0.13 -2.15 10.05 22.27 0.22 -1.93 16 26 C -0.11 -2.16 9.41 22.27 0.21 -1.95 16 27 C 0.03 0.69 4.58 86.32 0.40 1.09 16 28 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 29 H 0.01 0.53 7.20 -2.39 -0.02 0.52 16 30 H 0.01 0.49 7.57 -2.38 -0.02 0.47 16 31 H 0.41 13.70 8.32 -92.71 -0.77 12.93 16 32 H 0.13 2.53 8.04 -2.39 -0.02 2.51 16 33 H 0.08 1.71 8.12 -2.38 -0.02 1.69 16 34 H 0.11 1.47 8.09 -2.39 -0.02 1.45 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.09 1.70 8.08 -2.39 -0.02 1.68 16 39 H 0.09 1.87 8.08 -2.38 -0.02 1.85 16 40 H 0.12 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 42 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 43 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 44 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 45 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 46 H 0.07 2.39 6.10 -2.39 -0.01 2.38 16 Total: -1.00 -70.96 375.51 -0.94 -71.90 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.14 Total: 24.06 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: 4.84 Total: -3.23 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -6.27 Total: -102.89 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -1.53 Total: -35.84 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 46.00 kcal Total: -70.96 -0.94 -71.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776607469.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.722 kcal (2) G-P(sol) polarization free energy of solvation -70.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds