Wall clock time and date at job start Tue Mar 31 2020 04:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00183 * 2 1 4 4 H 1.48495 * 109.47271 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46905 * 300.00344 * 3 2 1 6 6 H 1.48503 * 109.46679 * 60.00208 * 3 2 1 7 7 C 1.37877 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00197 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00281 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47550 * 176.79889 * 9 7 2 11 11 C 1.46903 * 111.00347 * 78.09573 * 10 9 7 12 12 C 1.53000 * 109.46844 * 286.94117 * 11 10 9 13 13 C 1.52999 * 117.50192 * 112.71267 * 12 11 10 14 14 C 1.53004 * 117.49632 * 181.37200 * 12 11 10 15 15 C 1.46894 * 111.00172 * 202.05290 * 10 9 7 16 16 C 1.53004 * 109.47060 * 151.49769 * 15 10 9 17 17 O 1.42903 * 109.47056 * 305.49533 * 16 15 10 18 18 C 1.50695 * 109.47267 * 65.49761 * 16 15 10 19 19 N 1.34777 * 119.99938 * 55.67239 * 18 16 15 20 20 O 1.21288 * 119.99665 * 235.66469 * 18 16 15 21 21 C 1.50704 * 109.47043 * 185.50170 * 16 15 10 22 22 C 1.38239 * 119.99582 * 329.72289 * 21 16 15 23 23 C 1.38239 * 119.99944 * 179.81390 * 22 21 16 24 24 C 1.38244 * 119.99754 * 0.39596 * 23 22 21 25 25 C 1.38235 * 119.99679 * 359.85743 * 24 23 22 26 26 C 1.38230 * 120.00253 * 149.99825 * 21 16 15 27 27 H 0.96996 * 119.99931 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46963 * 56.79557 * 9 7 2 29 29 H 1.09001 * 109.46895 * 296.80162 * 9 7 2 30 30 H 1.08993 * 109.47286 * 166.93691 * 11 10 9 31 31 H 1.09000 * 109.46901 * 46.93417 * 11 10 9 32 32 H 1.09003 * 115.55409 * 327.03184 * 12 11 10 33 33 H 1.09003 * 117.49993 * 214.99940 * 13 12 11 34 34 H 1.09000 * 117.50029 * 0.02562 * 13 12 11 35 35 H 1.08995 * 117.49789 * 359.96736 * 14 12 11 36 36 H 1.08994 * 117.50156 * 144.99683 * 14 12 11 37 37 H 1.09003 * 109.46908 * 271.49058 * 15 10 9 38 38 H 1.09003 * 109.47275 * 31.49535 * 15 10 9 39 39 H 0.96701 * 113.99644 * 300.00161 * 17 16 15 40 40 H 0.96998 * 120.00087 * 359.97438 * 19 18 16 41 41 H 0.97004 * 119.99573 * 180.02562 * 19 18 16 42 42 H 1.07998 * 119.99942 * 359.97438 * 22 21 16 43 43 H 1.07997 * 119.99824 * 180.22842 * 23 22 21 44 44 H 1.07997 * 119.99987 * 179.83471 * 24 23 22 45 45 H 1.07997 * 119.99682 * 179.97438 * 25 24 23 46 46 H 1.07997 * 119.99950 * 359.97438 * 26 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2036 -3.6146 -0.0785 11 6 2.8254 -3.8683 1.2281 12 6 3.8294 -2.7566 1.5395 13 6 3.5020 -1.8133 2.6987 14 6 4.6108 -2.8575 2.8511 15 6 1.5544 -4.8262 -0.5966 16 6 2.5899 -5.6906 -1.3188 17 8 3.2452 -4.9111 -2.3214 18 6 3.6076 -6.1900 -0.3259 19 7 3.2069 -6.8778 0.7616 20 8 4.7874 -5.9731 -0.5057 21 6 1.9011 -6.8645 -1.9658 22 6 0.7560 -7.3921 -1.3989 23 6 0.1218 -8.4665 -1.9944 24 6 0.6375 -9.0184 -3.1523 25 6 1.7855 -8.4940 -3.7161 26 6 2.4174 -7.4172 -3.1228 27 1 -0.4850 0.8400 0.0004 28 1 0.5817 -2.5323 -0.8601 29 1 0.6684 -2.5823 0.9170 30 1 3.3416 -4.8280 1.2046 31 1 2.0552 -3.8887 1.9991 32 1 4.3457 -2.3343 0.6774 33 1 3.8027 -0.7703 2.5992 34 1 2.5714 -1.9849 3.2398 35 1 4.4092 -3.7156 3.4922 36 1 5.6410 -2.5015 2.8519 37 1 1.1241 -5.3901 0.2310 38 1 0.7653 -4.5455 -1.2943 39 1 2.6495 -4.5565 -2.9955 40 1 2.2634 -7.0511 0.9055 41 1 3.8620 -7.1990 1.4009 42 1 0.3553 -6.9634 -0.4923 43 1 -0.7749 -8.8764 -1.5536 44 1 0.1436 -9.8594 -3.6161 45 1 2.1885 -8.9254 -4.6205 46 1 3.3143 -7.0075 -3.5634 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851796987.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:01 Heat of formation + Delta-G solvation = -36.665695 kcal Electronic energy + Delta-G solvation = -28125.784868 eV Core-core repulsion = 24401.849294 eV Total energy + Delta-G solvation = -3723.935575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.81632 -39.71417 -39.05362 -37.65132 -36.39705 -35.05391 -34.35310 -32.67351 -31.76660 -29.89689 -28.93960 -27.16965 -25.03332 -23.54985 -23.16744 -23.11019 -22.48380 -21.24034 -21.03358 -18.89467 -18.62651 -18.43084 -17.50133 -16.88841 -16.83820 -16.48384 -16.36129 -16.00722 -15.70451 -15.49848 -15.18632 -15.09388 -14.82958 -14.47390 -14.29198 -14.21081 -13.62422 -13.58325 -13.18446 -13.06280 -12.98900 -12.57571 -12.50699 -12.35331 -12.27925 -12.23046 -11.89739 -11.84765 -11.36236 -11.05845 -10.97111 -10.87536 -10.77814 -10.54059 -10.28857 -9.83399 -9.71354 -8.94910 -8.10363 -6.12549 0.31605 0.48855 1.37774 1.40994 1.52222 1.59244 2.27682 2.44094 2.85499 2.90348 3.17144 3.23798 3.54725 3.63078 3.87148 3.91046 4.02476 4.13225 4.15821 4.16907 4.30800 4.33260 4.44847 4.57040 4.60702 4.65478 4.71359 4.72540 4.81811 4.91320 5.00960 5.13142 5.15428 5.20865 5.30551 5.34098 5.51215 5.54035 5.60279 5.61623 5.81288 5.85725 6.07849 6.16722 6.28844 6.40466 6.63858 6.81113 7.00645 7.29045 7.53538 9.00529 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.015397 B = 0.004316 C = 0.003786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.089303 B = 6485.837005 C = 7393.285280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.007 3.993 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.484 4.484 8 H 0.063 0.937 9 C 0.214 3.786 10 N -0.532 5.532 11 C 0.091 3.909 12 C -0.131 4.131 13 C -0.166 4.166 14 C -0.170 4.170 15 C 0.033 3.967 16 C 0.175 3.825 17 O -0.536 6.536 18 C 0.544 3.456 19 N -0.835 5.835 20 O -0.565 6.565 21 C -0.129 4.129 22 C -0.115 4.115 23 C -0.118 4.118 24 C -0.115 4.115 25 C -0.124 4.124 26 C -0.113 4.113 27 H 0.259 0.741 28 H 0.006 0.994 29 H -0.032 1.032 30 H 0.086 0.914 31 H 0.024 0.976 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.389 0.611 40 H 0.412 0.588 41 H 0.414 0.586 42 H 0.138 0.862 43 H 0.151 0.849 44 H 0.149 0.851 45 H 0.141 0.859 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.505 -20.363 -0.415 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.771 3.229 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.207 1.207 7 C -0.523 4.523 8 H 0.082 0.918 9 C 0.088 3.912 10 N -0.256 5.256 11 C -0.037 4.037 12 C -0.150 4.150 13 C -0.203 4.203 14 C -0.207 4.207 15 C -0.096 4.096 16 C 0.129 3.871 17 O -0.342 6.342 18 C 0.329 3.671 19 N -0.403 5.403 20 O -0.442 6.442 21 C -0.130 4.130 22 C -0.133 4.133 23 C -0.136 4.136 24 C -0.132 4.132 25 C -0.142 4.142 26 C -0.131 4.131 27 H 0.068 0.932 28 H 0.024 0.976 29 H -0.014 1.014 30 H 0.104 0.896 31 H 0.042 0.958 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.124 0.876 36 H 0.115 0.885 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.238 0.762 40 H 0.243 0.757 41 H 0.247 0.753 42 H 0.156 0.844 43 H 0.169 0.831 44 H 0.167 0.833 45 H 0.159 0.841 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.965 -20.023 -0.676 20.057 hybrid contribution -1.046 1.306 0.373 1.714 sum -0.081 -18.716 -0.303 18.719 Atomic orbital electron populations 1.70052 1.07171 1.27029 1.53698 1.25593 0.95394 1.01931 0.96066 0.85700 0.79149 0.80603 0.77425 1.19540 1.20980 1.20743 1.21529 0.93690 0.90425 1.46664 0.91848 1.19467 0.89456 0.88761 0.93482 1.61776 1.33426 1.04669 1.25690 1.21854 0.95117 0.97635 0.89130 1.21964 1.01061 1.00164 0.91763 1.22700 0.99183 0.95572 1.02835 1.23117 0.96627 1.01358 0.99620 1.22878 0.95027 0.92064 0.99627 1.19719 0.89929 0.89020 0.88449 1.86572 1.37786 1.70045 1.39751 1.19940 0.88525 0.76476 0.82135 1.43655 1.13554 1.58205 1.24906 1.90728 1.19705 1.57374 1.76409 1.20184 0.97512 0.97637 0.97699 1.21288 0.94257 0.96869 1.00885 1.21490 1.00478 0.95648 0.95995 1.21592 0.95662 1.00159 0.95817 1.21420 0.96259 0.95929 1.00626 1.21107 0.99948 0.96627 0.95403 0.93246 0.97553 1.01417 0.89599 0.95828 0.90485 0.90753 0.90005 0.87556 0.88494 0.91738 0.90030 0.76208 0.75691 0.75284 0.84441 0.83093 0.83277 0.84123 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.41 13.29 21.45 0.28 -55.12 16 2 C 0.01 0.38 5.46 84.65 0.46 0.85 16 3 Si 0.94 45.29 29.54 68.60 2.03 47.32 16 4 H -0.27 -12.82 7.11 99.48 0.71 -12.12 16 5 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 7 C -0.48 -26.68 7.50 25.60 0.19 -26.49 16 8 H 0.06 3.57 5.37 -2.91 -0.02 3.56 16 9 C 0.21 10.79 4.77 85.56 0.41 11.20 16 10 N -0.53 -21.93 4.06 -900.81 -3.66 -25.59 16 11 C 0.09 3.43 4.84 86.30 0.42 3.85 16 12 C -0.13 -5.31 3.90 -10.79 -0.04 -5.35 16 13 C -0.17 -6.39 9.41 30.62 0.29 -6.10 16 14 C -0.17 -5.47 10.25 30.62 0.31 -5.16 16 15 C 0.03 1.05 3.49 86.31 0.30 1.35 16 16 C 0.17 5.24 0.85 -12.29 -0.01 5.23 16 17 O -0.54 -19.09 11.25 -129.98 -1.46 -20.55 16 18 C 0.54 17.19 4.40 87.66 0.39 17.58 16 19 N -0.84 -17.47 7.37 -173.53 -1.28 -18.75 16 20 O -0.56 -23.41 17.34 15.95 0.28 -23.14 16 21 C -0.13 -3.08 4.74 -19.86 -0.09 -3.17 16 22 C -0.12 -2.13 8.61 22.27 0.19 -1.94 16 23 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 24 C -0.11 -1.68 10.05 22.27 0.22 -1.45 16 25 C -0.12 -2.22 10.05 22.27 0.22 -2.00 16 26 C -0.11 -2.63 9.35 22.27 0.21 -2.42 16 27 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.01 0.35 7.46 -2.39 -0.02 0.33 16 29 H -0.03 -1.72 7.72 -2.39 -0.02 -1.74 16 30 H 0.09 2.88 3.84 -2.39 -0.01 2.88 16 31 H 0.02 0.89 7.52 -2.39 -0.02 0.87 16 32 H 0.08 3.66 6.88 -2.39 -0.02 3.64 16 33 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 34 H 0.08 3.17 8.04 -2.39 -0.02 3.15 16 35 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 36 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 37 H 0.06 1.67 5.59 -2.39 -0.01 1.65 16 38 H 0.08 2.65 7.40 -2.39 -0.02 2.63 16 39 H 0.39 11.60 9.04 -74.06 -0.67 10.93 16 40 H 0.41 6.31 7.27 -92.71 -0.67 5.64 16 41 H 0.41 7.20 8.93 -92.71 -0.83 6.37 16 42 H 0.14 2.12 6.22 -2.91 -0.02 2.10 16 43 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 44 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 45 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 46 H 0.12 3.00 7.48 -2.91 -0.02 2.98 16 Total: -1.00 -75.36 367.55 -1.26 -76.61 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: -1.14 Total: 34.79 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 3.69 Total: -15.56 kcal Atomic # 7 Polarization: -94.81 SS G_CDS: -4.65 Total: -99.47 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -1.19 Total: -43.69 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -75.36 -1.26 -76.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851796987.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.947 kcal (2) G-P(sol) polarization free energy of solvation -75.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds