Wall clock time and date at job start Tue Mar 31 2020 04:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00134 * 2 1 4 4 H 1.48500 * 109.46849 * 240.00104 * 3 2 1 5 5 H 1.48497 * 109.47222 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46956 * 120.00346 * 3 2 1 7 7 C 1.37884 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00167 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99784 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.53819 * 59.90315 * 9 7 2 11 11 C 1.53124 * 109.50261 * 299.80102 * 9 7 2 12 12 C 1.53124 * 109.15828 * 182.40659 * 11 9 7 13 13 C 1.53033 * 109.27950 * 57.65622 * 12 11 9 14 14 N 1.46849 * 109.52278 * 300.81931 * 13 12 11 15 15 C 1.46907 * 110.99786 * 185.83751 * 14 13 12 16 16 C 1.53001 * 109.47133 * 52.29851 * 15 14 13 17 17 O 1.42899 * 109.46862 * 291.75690 * 16 15 14 18 18 C 1.50693 * 109.47172 * 51.75591 * 16 15 14 19 19 N 1.34774 * 120.00363 * 59.99863 * 18 16 15 20 20 O 1.21282 * 120.00141 * 240.00431 * 18 16 15 21 21 C 1.50696 * 109.47255 * 171.75725 * 16 15 14 22 22 C 1.38226 * 120.00186 * 149.99823 * 21 16 15 23 23 C 1.38233 * 120.00190 * 180.25976 * 22 21 16 24 24 C 1.38236 * 120.00032 * 359.52557 * 23 22 21 25 25 C 1.38232 * 119.99582 * 0.43115 * 24 23 22 26 26 C 1.38237 * 119.99725 * 329.97984 * 21 16 15 27 27 C 1.46845 * 111.19856 * 61.74313 * 14 13 12 28 28 H 0.97000 * 119.99704 * 359.97438 * 1 2 3 29 29 H 1.08994 * 109.52172 * 302.30809 * 11 9 7 30 30 H 1.08997 * 109.52348 * 62.44150 * 11 9 7 31 31 H 1.09003 * 109.49890 * 177.59801 * 12 11 9 32 32 H 1.09000 * 109.50495 * 297.71354 * 12 11 9 33 33 H 1.09001 * 109.46571 * 180.80079 * 13 12 11 34 34 H 1.09000 * 109.46696 * 60.83074 * 13 12 11 35 35 H 1.08995 * 109.47400 * 292.29143 * 15 14 13 36 36 H 1.09004 * 109.46883 * 172.29442 * 15 14 13 37 37 H 0.96705 * 114.00283 * 300.00241 * 17 16 15 38 38 H 0.97003 * 120.00104 * 0.02562 * 19 18 16 39 39 H 0.97001 * 120.00544 * 179.97438 * 19 18 16 40 40 H 1.08007 * 119.99840 * 359.97438 * 22 21 16 41 41 H 1.07997 * 120.00387 * 179.72638 * 23 22 21 42 42 H 1.07997 * 120.00301 * 180.21522 * 24 23 22 43 43 H 1.08006 * 119.99884 * 179.78724 * 25 24 23 44 44 H 1.07997 * 120.00024 * 359.97438 * 26 21 16 45 45 H 1.09003 * 109.46654 * 58.27572 * 27 14 13 46 46 H 1.09007 * 109.46302 * 178.25588 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6222 -2.5570 -0.8891 11 6 0.3746 -2.5834 1.2523 12 6 -0.3411 -3.9369 1.2748 13 6 0.6988 -5.0590 1.2372 14 7 1.5110 -4.9348 0.0201 15 6 2.4280 -6.0740 -0.1194 16 6 1.6396 -7.3803 -0.0056 17 8 1.1566 -7.5303 1.3309 18 6 0.4741 -7.3483 -0.9603 19 7 0.6904 -7.2128 -2.2836 20 8 -0.6587 -7.4444 -0.5378 21 6 2.5379 -8.5407 -0.3482 22 6 2.3244 -9.7757 0.2347 23 6 3.1517 -10.8388 -0.0755 24 6 4.1865 -10.6694 -0.9762 25 6 4.3995 -9.4346 -1.5599 26 6 3.5752 -8.3702 -1.2459 27 6 2.2447 -3.6630 -0.0012 28 1 -0.4850 0.8401 0.0004 29 1 0.9988 -2.4866 2.1406 30 1 -0.3626 -1.7808 1.2358 31 1 -0.9335 -4.0201 2.1860 32 1 -0.9949 -4.0174 0.4064 33 1 0.1921 -6.0241 1.2388 34 1 1.3436 -4.9862 2.1130 35 1 3.1801 -6.0337 0.6686 36 1 2.9181 -6.0290 -1.0920 37 1 1.8539 -7.5586 2.0003 38 1 1.5963 -7.1362 -2.6217 39 1 -0.0599 -7.1926 -2.8982 40 1 1.5139 -9.9089 0.9362 41 1 2.9876 -11.8026 0.3833 42 1 4.8307 -11.5008 -1.2213 43 1 5.2101 -9.3013 -2.2610 44 1 3.7416 -7.4055 -1.7019 45 1 2.8823 -3.5967 0.8805 46 1 2.8606 -3.6140 -0.8993 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000852321594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:48 Heat of formation + Delta-G solvation = -50.944144 kcal Electronic energy + Delta-G solvation = -27997.291358 eV Core-core repulsion = 24272.736623 eV Total energy + Delta-G solvation = -3724.554735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.88816 -38.80699 -37.94745 -36.45357 -34.08746 -33.33899 -32.10230 -31.28437 -31.11247 -29.76270 -27.91016 -24.91956 -24.72476 -22.85517 -22.40241 -21.69941 -21.23217 -19.94074 -18.53643 -18.04789 -17.70539 -16.74805 -16.27529 -15.83696 -15.53655 -15.11800 -15.01270 -14.58700 -14.55419 -14.11797 -13.85087 -13.66667 -13.35483 -13.15459 -13.06625 -12.92006 -12.35298 -12.27074 -12.08497 -11.90147 -11.64497 -11.42238 -11.06067 -10.90466 -10.78532 -10.62525 -10.23761 -9.94692 -9.78573 -9.66736 -9.48079 -9.37379 -9.21290 -9.00251 -8.79652 -8.61780 -8.24441 -7.68096 -5.93798 -4.00801 0.96519 1.10802 2.82742 3.26004 3.32960 3.38160 3.39770 3.50117 4.04941 4.32357 4.45504 4.64049 4.70477 4.71904 4.81328 4.90913 4.97943 5.16201 5.30972 5.35705 5.49549 5.62670 5.65758 5.76021 5.97399 6.03584 6.14400 6.22125 6.23539 6.25684 6.43788 6.52534 6.66845 6.67344 6.83728 6.90680 6.99156 7.03230 7.30925 7.33731 7.45576 7.53851 7.70678 7.77736 7.84893 8.12627 8.23527 8.44006 8.51314 9.03250 9.63145 11.11812 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.021817 B = 0.003416 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.074737 B = 8194.674956 C = 8738.406466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.517 4.517 8 H 0.052 0.948 9 C 0.058 3.942 10 H 0.033 0.967 11 C -0.111 4.111 12 C -0.115 4.115 13 C 0.038 3.962 14 N -0.532 5.532 15 C 0.032 3.968 16 C 0.162 3.838 17 O -0.519 6.519 18 C 0.560 3.440 19 N -0.844 5.844 20 O -0.521 6.521 21 C -0.118 4.118 22 C -0.096 4.096 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.119 4.119 26 C -0.111 4.111 27 C 0.067 3.933 28 H 0.260 0.740 29 H 0.027 0.973 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.111 0.889 34 H 0.015 0.985 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.379 0.621 38 H 0.397 0.603 39 H 0.405 0.595 40 H 0.132 0.868 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.019 0.981 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.293 -21.020 -2.535 22.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.039 3.961 10 H 0.051 0.949 11 C -0.149 4.149 12 C -0.153 4.153 13 C -0.088 4.088 14 N -0.256 5.256 15 C -0.097 4.097 16 C 0.117 3.883 17 O -0.325 6.325 18 C 0.343 3.657 19 N -0.409 5.409 20 O -0.395 6.395 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.138 4.138 24 C -0.134 4.134 25 C -0.137 4.137 26 C -0.129 4.129 27 C -0.059 4.059 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.033 0.967 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.228 0.772 38 H 0.225 0.775 39 H 0.236 0.764 40 H 0.150 0.850 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.147 0.853 45 H 0.037 0.963 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.562 -20.954 -2.753 22.129 hybrid contribution 1.944 1.098 0.576 2.306 sum 8.506 -19.856 -2.176 21.710 Atomic orbital electron populations 1.69898 1.05827 1.26395 1.50394 1.24940 0.94809 0.98898 0.95170 0.86699 0.79608 0.83404 0.78481 1.20347 1.21326 1.20422 1.21105 0.92684 0.90752 1.51005 0.93003 1.18622 0.92513 0.90019 0.94935 0.94907 1.21656 0.99914 0.95091 0.98200 1.21643 0.97400 0.96245 1.00038 1.22717 0.95601 1.01843 0.88679 1.62142 1.22885 1.01315 1.39280 1.22822 0.94404 0.90360 1.02123 1.19866 0.91212 0.92348 0.84850 1.86674 1.36517 1.95460 1.13884 1.19266 0.89003 0.74781 0.82686 1.43501 1.12340 1.77667 1.07363 1.90742 1.23350 1.48329 1.77068 1.20289 0.97039 0.95235 0.99362 1.21088 0.99126 0.91834 0.99353 1.21182 0.95495 0.98874 0.98270 1.21235 0.97853 0.97468 0.96876 1.21159 0.99521 0.92900 1.00074 1.21190 0.94651 0.99431 0.97670 1.22328 0.96485 0.88638 0.98475 0.93006 0.95406 0.89368 0.93762 0.92425 0.87130 0.96709 0.93963 0.89818 0.77249 0.77527 0.76364 0.85050 0.85854 0.86011 0.85684 0.85266 0.96316 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.74 11.36 55.43 0.63 -25.11 16 2 C 0.06 1.77 5.30 -17.81 -0.09 1.67 16 3 Si 0.89 21.37 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.24 8.56 -34.44 -0.29 -14.54 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.06 1.47 2.26 -91.69 -0.21 1.26 16 10 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 11 C -0.11 -2.74 5.03 -26.60 -0.13 -2.87 16 12 C -0.12 -2.51 6.09 -26.65 -0.16 -2.67 16 13 C 0.04 0.73 4.35 -3.83 -0.02 0.72 16 14 N -0.53 -9.67 4.16 -234.66 -0.98 -10.64 16 15 C 0.03 0.44 3.87 -3.82 -0.01 0.42 16 16 C 0.16 2.08 0.67 -92.93 -0.06 2.02 16 17 O -0.52 -6.97 8.07 -55.14 -0.44 -7.41 16 18 C 0.56 8.54 5.77 -10.99 -0.06 8.48 16 19 N -0.84 -9.77 8.68 31.22 0.27 -9.50 16 20 O -0.52 -10.23 16.60 -14.35 -0.24 -10.47 16 21 C -0.12 -1.23 4.66 -104.63 -0.49 -1.71 16 22 C -0.10 -0.95 9.35 -39.59 -0.37 -1.32 16 23 C -0.12 -1.00 10.05 -39.58 -0.40 -1.39 16 24 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 25 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 26 C -0.11 -0.98 8.36 -39.58 -0.33 -1.31 16 27 C 0.07 1.41 4.68 -3.83 -0.02 1.40 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 2.44 6.16 -51.93 -0.32 2.12 16 31 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.11 2.12 3.85 -50.58 -0.19 1.92 16 34 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.99 5.70 -51.93 -0.30 0.69 16 37 H 0.38 3.66 9.04 47.00 0.42 4.09 16 38 H 0.40 3.57 7.45 -40.82 -0.30 3.27 16 39 H 0.40 4.26 8.93 -40.82 -0.36 3.90 16 40 H 0.13 1.34 7.48 -52.48 -0.39 0.95 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 43 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 44 H 0.13 0.98 5.88 -52.49 -0.31 0.67 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 1.13 8.12 -51.92 -0.42 0.71 16 LS Contribution 358.66 15.07 5.40 5.40 Total: -1.00 -33.73 358.66 -9.77 -43.50 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -5.95 Total: 10.32 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -3.45 Total: -12.43 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.08 Total: -45.26 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.68 Total: -17.88 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.73 -9.77 -43.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000852321594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.444 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds