Wall clock time and date at job start Tue Mar 31 2020 04:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99841 * 2 1 4 4 H 1.48505 * 109.46756 * 269.99743 * 3 2 1 5 5 H 1.48496 * 109.47472 * 29.99903 * 3 2 1 6 6 H 1.48501 * 109.46910 * 150.00243 * 3 2 1 7 7 C 1.37878 * 120.00030 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00229 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99584 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.46874 * 299.99495 * 9 7 2 11 11 O 1.42898 * 109.47401 * 59.99947 * 9 7 2 12 12 C 1.53004 * 109.46657 * 179.97438 * 9 7 2 13 13 N 1.46900 * 109.47119 * 179.97438 * 12 9 7 14 14 C 1.46852 * 110.99791 * 294.20800 * 13 12 9 15 15 C 1.53037 * 109.52291 * 174.15766 * 14 13 12 16 16 C 1.53116 * 109.27531 * 59.17897 * 15 14 13 17 17 C 1.50703 * 109.52462 * 62.25023 * 16 15 14 18 18 N 1.34781 * 119.99432 * 53.60860 * 17 16 15 19 19 O 1.21277 * 120.00358 * 233.60832 * 17 16 15 20 20 C 1.50700 * 109.52225 * 182.44020 * 16 15 14 21 21 C 1.38233 * 120.00154 * 354.45781 * 20 16 15 22 22 C 1.38238 * 120.00285 * 179.78852 * 21 20 16 23 23 C 1.38233 * 119.99584 * 0.44238 * 22 21 20 24 24 C 1.38240 * 120.00462 * 359.80948 * 23 22 21 25 25 C 1.38230 * 119.99402 * 359.97438 * 24 23 22 26 26 C 1.53118 * 109.16394 * 302.34579 * 16 15 14 27 27 C 1.46840 * 111.00006 * 170.00077 * 13 12 9 28 28 H 0.97003 * 120.00473 * 359.97438 * 1 2 3 29 29 H 0.96696 * 113.99663 * 59.99523 * 11 9 7 30 30 H 1.08996 * 109.47011 * 59.99837 * 12 9 7 31 31 H 1.08998 * 109.47293 * 299.99745 * 12 9 7 32 32 H 1.08992 * 109.46281 * 294.17505 * 14 13 12 33 33 H 1.09005 * 109.46257 * 54.14645 * 14 13 12 34 34 H 1.09002 * 109.50529 * 299.24121 * 15 14 13 35 35 H 1.08993 * 109.53945 * 179.14198 * 15 14 13 36 36 H 0.96997 * 120.00402 * 5.02062 * 18 17 16 37 37 H 0.97003 * 119.99694 * 185.01461 * 18 17 16 38 38 H 1.08001 * 120.00005 * 359.97438 * 21 20 16 39 39 H 1.07995 * 120.00231 * 180.27320 * 22 21 20 40 40 H 1.07998 * 120.00059 * 179.83529 * 23 22 21 41 41 H 1.08000 * 120.00228 * 180.02562 * 24 23 22 42 42 H 1.08008 * 119.99449 * 179.97438 * 25 24 23 43 43 H 1.08996 * 109.50492 * 297.71407 * 26 16 15 44 44 H 1.08998 * 109.50414 * 177.59596 * 26 16 15 45 45 H 1.08999 * 109.46398 * 305.85335 * 27 13 12 46 46 H 1.08996 * 109.46406 * 65.82591 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 1 0.6240 -2.5567 0.8904 11 8 0.4298 -2.5751 -1.1665 12 6 2.2452 -3.6621 0.0005 13 7 1.5107 -4.9343 0.0012 14 6 0.7612 -5.1086 1.2519 15 6 -0.1032 -6.3680 1.1589 16 6 0.7966 -7.5812 0.9079 17 6 1.7397 -7.7578 2.0700 18 7 1.2549 -7.8374 3.3251 19 8 2.9348 -7.8283 1.8759 20 6 -0.0538 -8.8160 0.7557 21 6 -1.4185 -8.7455 0.9643 22 6 -2.1991 -9.8772 0.8204 23 6 -1.6138 -11.0815 0.4768 24 6 -0.2483 -11.1532 0.2732 25 6 0.5316 -10.0205 0.4128 26 6 1.6018 -7.3532 -0.3744 27 6 2.4167 -6.0651 -0.2369 28 1 -0.4851 0.8400 0.0004 29 1 0.9222 -2.5299 -1.9974 30 1 2.8718 -3.6043 0.8905 31 1 2.8718 -3.6044 -0.8894 32 1 1.4594 -5.2079 2.0829 33 1 0.1222 -4.2409 1.4163 34 1 -0.8111 -6.2637 0.3366 35 1 -0.6481 -6.5060 2.0927 36 1 0.2967 -7.8543 3.4748 37 1 1.8644 -7.8778 4.0787 38 1 -1.8752 -7.8055 1.2368 39 1 -3.2659 -9.8212 0.9790 40 1 -2.2233 -11.9662 0.3669 41 1 0.2089 -12.0940 0.0044 42 1 1.5985 -10.0767 0.2541 43 1 0.9208 -7.2643 -1.2207 44 1 2.2756 -8.1947 -0.5355 45 1 2.9802 -5.8923 -1.1537 46 1 3.1072 -6.1600 0.6012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929656865.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:41:14 Heat of formation + Delta-G solvation = -60.892107 kcal Electronic energy + Delta-G solvation = -27668.799829 eV Core-core repulsion = 23943.813718 eV Total energy + Delta-G solvation = -3724.986111 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.13948 -38.84829 -37.71508 -35.59017 -34.17249 -33.31704 -32.03473 -31.39161 -30.33384 -30.22159 -27.92818 -25.54614 -23.85103 -23.65824 -22.40133 -21.78906 -21.17107 -19.96541 -19.14861 -17.43336 -17.29575 -16.89996 -16.46221 -15.62443 -15.04457 -14.85179 -14.75716 -14.56036 -14.41535 -14.24649 -13.84565 -13.75580 -13.55674 -13.33871 -13.05267 -12.87336 -12.60541 -12.47056 -11.83320 -11.78023 -11.47712 -11.27675 -11.06740 -10.96152 -10.89103 -10.79364 -10.60755 -10.35512 -10.19169 -9.97449 -9.87668 -9.68673 -9.09961 -8.91366 -8.84426 -8.53776 -8.04122 -7.52518 -5.97726 -4.15464 1.12474 1.21774 2.60164 3.29242 3.36113 3.39049 3.40291 3.65748 4.35015 4.41717 4.53165 4.59413 4.78694 4.81815 4.92542 4.94081 5.00801 5.28914 5.29937 5.33664 5.48456 5.64100 5.65928 5.72383 5.78112 5.85370 5.91747 5.93092 6.15641 6.20145 6.23651 6.28571 6.33025 6.35659 6.39983 6.44657 6.48769 6.64587 6.72115 6.80137 6.88075 7.24548 7.61695 7.70644 7.82938 7.92943 8.21036 8.24844 8.88625 9.50149 9.66750 11.06313 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023717 B = 0.003125 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.314011 B = 8957.562195 C = 9358.533510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.573 4.573 8 H 0.054 0.946 9 C 0.238 3.762 10 H 0.053 0.947 11 O -0.554 6.554 12 C 0.031 3.969 13 N -0.524 5.524 14 C 0.054 3.946 15 C -0.103 4.103 16 C -0.037 4.037 17 C 0.537 3.463 18 N -0.854 5.854 19 O -0.537 6.537 20 C -0.070 4.070 21 C -0.114 4.114 22 C -0.118 4.118 23 C -0.123 4.123 24 C -0.119 4.119 25 C -0.110 4.110 26 C -0.084 4.084 27 C 0.045 3.955 28 H 0.260 0.740 29 H 0.343 0.657 30 H 0.024 0.976 31 H 0.063 0.937 32 H 0.021 0.979 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.400 0.600 37 H 0.399 0.601 38 H 0.132 0.868 39 H 0.123 0.877 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 -21.657 4.102 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.612 4.612 8 H 0.072 0.928 9 C 0.180 3.820 10 H 0.071 0.929 11 O -0.355 6.355 12 C -0.096 4.096 13 N -0.249 5.249 14 C -0.074 4.074 15 C -0.141 4.141 16 C -0.040 4.040 17 C 0.322 3.678 18 N -0.417 5.417 19 O -0.413 6.413 20 C -0.071 4.071 21 C -0.132 4.132 22 C -0.136 4.136 23 C -0.141 4.141 24 C -0.137 4.137 25 C -0.128 4.128 26 C -0.122 4.122 27 C -0.083 4.083 28 H 0.069 0.931 29 H 0.186 0.814 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.039 0.961 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.229 0.771 37 H 0.230 0.770 38 H 0.150 0.850 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.554 -21.604 3.869 22.234 hybrid contribution 1.368 0.933 0.747 1.817 sum -2.186 -20.671 4.616 21.292 Atomic orbital electron populations 1.70080 1.05865 1.26311 1.47236 1.25013 0.94684 0.99011 0.93906 0.86692 0.79959 0.83609 0.78216 1.20515 1.21155 1.19922 1.21680 0.93171 0.91696 1.54641 0.92793 1.19306 0.87750 0.88511 0.86425 0.92916 1.86541 1.37716 1.96310 1.14975 1.23057 0.97221 0.89783 0.99535 1.61968 1.27253 1.01987 1.33650 1.22090 0.96772 0.97933 0.90627 1.21790 0.97639 0.92230 1.02475 1.19869 0.94950 0.94085 0.95126 1.20367 0.88895 0.74263 0.84324 1.43834 1.11813 1.77955 1.08064 1.90703 1.16292 1.49309 1.84974 1.19583 0.93773 0.93578 1.00148 1.21261 0.93014 0.99066 0.99876 1.21163 0.99853 0.92759 0.99836 1.21171 0.94996 0.97907 1.00035 1.21118 0.94023 0.98258 1.00284 1.21082 1.00187 0.92271 0.99280 1.21450 0.98188 0.97890 0.94639 1.22221 0.94422 0.90272 1.01425 0.93064 0.81444 0.95782 0.91825 0.96055 0.89136 0.89147 0.91463 0.77116 0.77002 0.85043 0.85923 0.86240 0.86138 0.86011 0.90270 0.91192 0.91120 0.93562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.38 12.84 55.43 0.71 -24.67 16 2 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.57 -15.86 8.76 -34.44 -0.30 -16.16 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.24 6.04 2.70 -27.88 -0.08 5.96 16 10 H 0.05 1.46 6.43 -51.93 -0.33 1.12 16 11 O -0.55 -14.40 12.60 -35.23 -0.44 -14.84 16 12 C 0.03 0.67 4.56 -3.82 -0.02 0.65 16 13 N -0.52 -9.69 4.52 -234.67 -1.06 -10.76 16 14 C 0.05 0.91 5.09 -3.83 -0.02 0.89 16 15 C -0.10 -1.33 3.42 -26.65 -0.09 -1.42 16 16 C -0.04 -0.46 0.48 -156.69 -0.07 -0.53 16 17 C 0.54 7.12 5.00 -10.98 -0.05 7.07 16 18 N -0.85 -8.25 8.65 31.22 0.27 -7.98 16 19 O -0.54 -9.01 14.91 5.56 0.08 -8.93 16 20 C -0.07 -0.76 4.73 -104.62 -0.49 -1.26 16 21 C -0.11 -1.09 8.99 -39.58 -0.36 -1.45 16 22 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 23 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 24 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 25 C -0.11 -1.17 8.94 -39.58 -0.35 -1.52 16 26 C -0.08 -1.17 4.22 -26.65 -0.11 -1.28 16 27 C 0.04 0.74 5.19 -3.84 -0.02 0.72 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 29 H 0.34 8.10 9.04 45.56 0.41 8.51 16 30 H 0.02 0.53 8.12 -51.93 -0.42 0.10 16 31 H 0.06 1.33 7.99 -51.93 -0.41 0.92 16 32 H 0.02 0.37 7.31 -51.93 -0.38 -0.01 16 33 H 0.09 1.72 6.21 -51.93 -0.32 1.40 16 34 H 0.09 1.22 7.64 -51.93 -0.40 0.83 16 35 H 0.07 0.68 6.55 -51.93 -0.34 0.34 16 36 H 0.40 2.96 8.00 -40.82 -0.33 2.64 16 37 H 0.40 3.39 8.93 -40.82 -0.36 3.03 16 38 H 0.13 1.13 5.93 -52.49 -0.31 0.82 16 39 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 42 H 0.12 1.32 7.32 -52.48 -0.38 0.93 16 43 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.07 0.94 7.05 -51.93 -0.37 0.57 16 45 H 0.07 1.14 8.02 -51.93 -0.42 0.73 16 46 H 0.05 0.84 5.96 -51.93 -0.31 0.53 16 LS Contribution 360.84 15.07 5.44 5.44 Total: -1.00 -33.20 360.84 -9.19 -42.39 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: -5.91 Total: 13.56 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -3.26 Total: -10.49 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: -0.08 Total: -43.41 kcal Atomic # 8 Polarization: -23.41 SS G_CDS: -0.36 Total: -23.77 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.20 -9.19 -42.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929656865.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.504 kcal (2) G-P(sol) polarization free energy of solvation -33.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds