Wall clock time and date at job start Tue Mar 31 2020 04:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38369 * 119.92257 * 2 1 4 4 C 1.38357 * 120.28750 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.92332 * 179.97438 * 4 3 2 6 6 C 1.37957 * 120.14942 * 0.02562 * 4 3 2 7 7 C 1.39579 * 119.85187 * 359.97438 * 6 4 3 8 8 C 1.47844 * 120.14370 * 179.97438 * 7 6 4 9 9 O 1.21552 * 119.99753 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00120 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00281 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.46108 * 324.96999 * 11 10 8 13 13 C 1.53042 * 109.46045 * 84.93072 * 11 10 8 14 14 C 1.52760 * 109.38363 * 181.26060 * 13 11 10 15 15 N 1.46921 * 109.01057 * 305.58794 * 14 13 11 16 16 C 1.36932 * 120.63174 * 233.58791 * 15 14 13 17 17 H 1.08002 * 120.00343 * 152.17256 * 16 15 14 18 18 C 1.38815 * 119.99520 * 331.89167 * 16 15 14 19 19 N 1.31619 * 120.00204 * 343.16792 * 18 16 15 20 20 Si 1.86804 * 119.99843 * 163.16785 * 18 16 15 21 21 H 1.48503 * 109.47110 * 60.00230 * 20 18 16 22 22 H 1.48499 * 109.47407 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47053 * 300.00236 * 20 18 16 24 24 C 1.46925 * 118.73818 * 53.30568 * 15 14 13 25 25 C 1.53042 * 109.45926 * 204.99742 * 11 10 8 26 26 H 1.08993 * 109.49818 * 58.66448 * 25 11 10 27 27 O 1.42897 * 109.49820 * 298.56194 * 25 11 10 28 28 C 1.37955 * 119.93228 * 180.25362 * 2 1 3 29 29 H 1.09001 * 109.47244 * 90.00186 * 1 2 3 30 30 H 1.09007 * 109.46874 * 210.00344 * 1 2 3 31 31 H 1.08999 * 109.47769 * 329.99842 * 1 2 3 32 32 H 1.08001 * 119.85282 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.47428 * 270.02217 * 5 4 3 34 34 H 1.09004 * 109.47118 * 30.01894 * 5 4 3 35 35 H 1.09004 * 109.46989 * 150.01775 * 5 4 3 36 36 H 1.08005 * 120.07237 * 179.97438 * 6 4 3 37 37 H 0.97010 * 120.00296 * 359.97438 * 10 8 7 38 38 H 1.09005 * 109.49336 * 301.33734 * 13 11 10 39 39 H 1.09003 * 109.50008 * 61.40119 * 13 11 10 40 40 H 1.08999 * 109.50888 * 185.69982 * 14 13 11 41 41 H 1.09005 * 109.42847 * 65.42578 * 14 13 11 42 42 H 0.97002 * 119.99648 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.58924 * 66.43354 * 24 15 14 44 44 H 1.09004 * 109.59047 * 186.71645 * 24 15 14 45 45 H 0.96705 * 114.00012 * 180.16053 * 27 25 11 46 46 H 1.07999 * 120.07399 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5807 1.2081 -0.0005 5 6 4.3242 2.5189 -0.0011 6 6 4.2812 0.0196 -0.0016 7 6 3.5911 -1.1937 -0.0016 8 6 4.3353 -2.4712 -0.0033 9 8 5.5508 -2.4664 -0.0052 10 7 3.6660 -3.6409 -0.0038 11 6 4.4034 -4.9068 -0.0061 12 1 5.3126 -4.7964 -0.5969 13 6 4.7718 -5.2848 1.4304 14 6 5.5677 -6.5887 1.4233 15 7 4.7981 -7.6152 0.7074 16 6 4.5304 -8.8228 1.2949 17 1 3.6469 -9.3764 1.0132 18 6 5.3977 -9.3381 2.2484 19 7 6.6188 -8.8586 2.3549 20 14 4.8317 -10.7121 3.3804 21 1 4.4467 -11.8949 2.5691 22 1 5.9369 -11.0823 4.3006 23 1 3.6619 -10.2520 4.1708 24 6 4.3158 -7.3191 -0.6485 25 6 3.5292 -6.0049 -0.6161 26 1 3.2478 -5.7242 -1.6310 27 8 2.3522 -6.1731 0.1767 28 6 2.1953 -1.1955 -0.0053 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.6535 2.1324 0.0004 33 1 4.5027 2.8350 -1.0289 34 1 3.7296 3.2741 0.5131 35 1 5.2779 2.3960 0.5121 36 1 5.3612 0.0279 -0.0024 37 1 2.6959 -3.6448 -0.0027 38 1 5.3749 -4.4914 1.8720 39 1 3.8623 -5.4192 2.0160 40 1 5.7441 -6.9131 2.4488 41 1 6.5210 -6.4289 0.9194 42 1 7.2247 -9.2185 3.0215 43 1 5.1648 -7.2202 -1.3249 44 1 3.6684 -8.1266 -0.9906 45 1 1.7518 -6.8567 -0.1508 46 1 1.6554 -2.1309 -0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090762374.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:01 Heat of formation + Delta-G solvation = -47.854507 kcal Electronic energy + Delta-G solvation = -26860.980936 eV Core-core repulsion = 23136.560178 eV Total energy + Delta-G solvation = -3724.420758 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.35484 -39.03390 -37.78533 -34.92982 -34.43555 -33.70695 -32.54086 -31.59332 -29.89575 -28.75534 -27.61947 -26.83230 -25.33612 -23.71753 -22.28499 -21.72690 -20.86209 -19.98127 -19.35383 -17.52430 -17.04474 -16.41328 -16.12255 -15.81615 -15.20598 -14.80642 -14.65675 -14.46646 -14.20319 -14.03286 -13.80675 -13.56026 -13.48115 -13.28977 -13.04881 -12.82052 -12.77311 -12.23342 -12.08538 -12.03407 -11.72050 -11.70584 -11.25840 -11.20920 -11.01185 -10.82829 -10.70155 -10.29199 -10.22469 -10.03473 -9.84133 -9.58672 -9.31734 -9.02696 -8.81008 -8.64817 -8.38603 -6.66294 -5.77234 -3.19871 0.75222 1.13632 2.88804 3.33551 3.39788 3.45623 3.46693 3.76408 4.48314 4.48607 4.51141 4.59344 4.73465 4.92802 5.04138 5.07680 5.19835 5.27061 5.31545 5.35230 5.36428 5.36764 5.42343 5.54338 5.58603 5.61488 5.75882 5.81401 5.89434 5.97208 6.17623 6.23129 6.28023 6.33176 6.40408 6.49882 6.58731 6.65791 6.71584 6.84964 6.95422 7.42308 7.68565 7.76351 7.79467 8.08438 8.41418 8.45827 9.20963 9.83778 10.40089 11.31241 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023028 B = 0.002851 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.618717 B = 9819.518004 C =10306.760384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.091 4.091 3 C -0.101 4.101 4 C -0.093 4.093 5 C -0.113 4.113 6 C -0.068 4.068 7 C -0.119 4.119 8 C 0.551 3.449 9 O -0.539 6.539 10 N -0.713 5.713 11 C 0.161 3.839 12 H 0.092 0.908 13 C -0.143 4.143 14 C 0.174 3.826 15 N -0.581 5.581 16 C -0.251 4.251 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.904 3.096 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.119 3.881 25 C 0.082 3.918 26 H 0.046 0.954 27 O -0.555 6.555 28 C -0.093 4.093 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.135 0.865 37 H 0.400 0.600 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.090 0.910 41 H 0.019 0.981 42 H 0.255 0.745 43 H 0.027 0.973 44 H 0.061 0.939 45 H 0.372 0.628 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.606 19.660 -6.917 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.092 4.092 3 C -0.119 4.119 4 C -0.093 4.093 5 C -0.170 4.170 6 C -0.087 4.087 7 C -0.122 4.122 8 C 0.338 3.662 9 O -0.417 6.417 10 N -0.363 5.363 11 C 0.058 3.942 12 H 0.109 0.891 13 C -0.184 4.184 14 C 0.048 3.952 15 N -0.304 5.304 16 C -0.380 4.380 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.734 3.266 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.210 1.210 24 C -0.009 4.009 25 C 0.020 3.980 26 H 0.063 0.937 27 O -0.360 6.360 28 C -0.112 4.112 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.153 0.847 37 H 0.235 0.765 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.108 0.892 41 H 0.037 0.963 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.080 0.920 45 H 0.219 0.781 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.295 20.028 -6.450 23.425 hybrid contribution -0.950 -1.213 0.273 1.565 sum -11.245 18.816 -6.177 22.774 Atomic orbital electron populations 1.20800 0.90740 1.03059 1.02482 1.19829 0.96295 0.92775 1.00254 1.21080 0.93515 0.97604 0.99732 1.19879 0.93765 0.95346 1.00304 1.20794 1.00167 0.93559 1.02492 1.21164 1.00717 0.90360 0.96460 1.20045 0.93593 0.93890 1.04703 1.18283 0.87358 0.83754 0.76791 1.90774 1.13343 1.87549 1.50016 1.46129 1.10535 1.05627 1.74026 1.21052 0.93972 0.80039 0.99143 0.89054 1.22424 1.01475 0.99960 0.94499 1.20686 0.90805 0.84210 0.99499 1.43883 1.62984 1.13313 1.10190 1.19071 1.03456 0.96204 1.19318 0.91846 1.25043 0.94615 0.98373 1.01604 1.70027 1.04314 1.44521 1.35707 0.86356 0.77648 0.81798 0.80846 1.20960 1.21661 1.21030 1.21533 0.96424 0.93632 0.89312 1.22631 0.86521 0.96911 0.91919 0.93664 1.86444 1.32916 1.60702 1.55938 1.21215 0.92965 0.98096 0.98891 0.91042 0.91212 0.91454 0.85816 0.91035 0.91469 0.91205 0.84683 0.76496 0.92963 0.91578 0.89150 0.96274 0.93523 0.95510 0.92015 0.78122 0.85567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.00 0.36 -0.41 16 2 C -0.09 -0.87 5.87 -104.68 -0.61 -1.48 16 3 C -0.10 -0.92 9.35 -39.49 -0.37 -1.29 16 4 C -0.09 -0.93 5.87 -104.68 -0.61 -1.55 16 5 C -0.11 -0.83 10.01 36.01 0.36 -0.47 16 6 C -0.07 -0.85 9.24 -39.18 -0.36 -1.21 16 7 C -0.12 -1.61 5.87 -104.97 -0.62 -2.23 16 8 C 0.55 9.12 7.74 -12.33 -0.10 9.02 16 9 O -0.54 -10.81 16.01 5.32 0.09 -10.72 16 10 N -0.71 -11.12 5.00 -54.71 -0.27 -11.40 16 11 C 0.16 2.94 2.20 -67.89 -0.15 2.80 16 12 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 13 C -0.14 -3.03 5.49 -26.83 -0.15 -3.18 16 14 C 0.17 4.32 5.28 -3.94 -0.02 4.30 16 15 N -0.58 -14.42 2.94 -172.58 -0.51 -14.93 16 16 C -0.25 -6.81 9.58 -15.06 -0.14 -6.96 16 17 H 0.06 1.67 7.88 -52.49 -0.41 1.25 16 18 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 19 N -0.90 -26.46 11.18 55.49 0.62 -25.84 16 20 Si 0.90 21.79 29.59 -169.99 -5.03 16.76 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.12 2.38 6.16 -3.71 -0.02 2.36 16 25 C 0.08 1.36 3.38 -26.61 -0.09 1.27 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 O -0.56 -8.98 12.09 -35.23 -0.43 -9.40 16 28 C -0.09 -1.03 9.19 -39.19 -0.36 -1.39 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 31 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 35 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 36 H 0.14 1.74 7.65 -52.48 -0.40 1.34 16 37 H 0.40 5.36 6.29 -40.82 -0.26 5.10 16 38 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 1.46 7.61 -51.93 -0.40 1.06 16 40 H 0.09 2.51 6.05 -51.93 -0.31 2.20 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.06 1.16 7.93 -51.93 -0.41 0.74 16 45 H 0.37 4.72 9.08 45.56 0.41 5.13 16 46 H 0.13 1.22 6.41 -52.49 -0.34 0.88 16 LS Contribution 372.34 15.07 5.61 5.61 Total: -1.00 -32.93 372.34 -9.18 -42.11 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -6.28 Total: 8.24 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -2.97 Total: -0.43 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: -0.16 Total: -52.17 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.34 Total: -20.12 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.93 -9.18 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090762374.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.747 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds