Wall clock time and date at job start Tue Mar 31 2020 04:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38369 * 119.92257 * 2 1 4 4 C 1.38357 * 120.28750 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.92332 * 179.97438 * 4 3 2 6 6 C 1.37957 * 120.14942 * 0.02562 * 4 3 2 7 7 C 1.39579 * 119.85187 * 359.97438 * 6 4 3 8 8 C 1.47844 * 120.14370 * 179.97438 * 7 6 4 9 9 O 1.21552 * 119.99753 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00120 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00281 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.46108 * 324.96999 * 11 10 8 13 13 C 1.53042 * 109.46045 * 84.93072 * 11 10 8 14 14 C 1.52760 * 109.38363 * 181.26060 * 13 11 10 15 15 N 1.46921 * 109.01057 * 305.58794 * 14 13 11 16 16 C 1.36932 * 120.63174 * 233.58791 * 15 14 13 17 17 H 1.08002 * 120.00343 * 152.17256 * 16 15 14 18 18 C 1.38815 * 119.99520 * 331.89167 * 16 15 14 19 19 N 1.31619 * 120.00204 * 343.16792 * 18 16 15 20 20 Si 1.86804 * 119.99843 * 163.16785 * 18 16 15 21 21 H 1.48503 * 109.47110 * 60.00230 * 20 18 16 22 22 H 1.48499 * 109.47407 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47053 * 300.00236 * 20 18 16 24 24 C 1.46925 * 118.73818 * 53.30568 * 15 14 13 25 25 C 1.53042 * 109.45926 * 204.99742 * 11 10 8 26 26 H 1.08993 * 109.49818 * 58.66448 * 25 11 10 27 27 O 1.42897 * 109.49820 * 298.56194 * 25 11 10 28 28 C 1.37955 * 119.93228 * 180.25362 * 2 1 3 29 29 H 1.09001 * 109.47244 * 90.00186 * 1 2 3 30 30 H 1.09007 * 109.46874 * 210.00344 * 1 2 3 31 31 H 1.08999 * 109.47769 * 329.99842 * 1 2 3 32 32 H 1.08001 * 119.85282 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.47428 * 270.02217 * 5 4 3 34 34 H 1.09004 * 109.47118 * 30.01894 * 5 4 3 35 35 H 1.09004 * 109.46989 * 150.01775 * 5 4 3 36 36 H 1.08005 * 120.07237 * 179.97438 * 6 4 3 37 37 H 0.97010 * 120.00296 * 359.97438 * 10 8 7 38 38 H 1.09005 * 109.49336 * 301.33734 * 13 11 10 39 39 H 1.09003 * 109.50008 * 61.40119 * 13 11 10 40 40 H 1.08999 * 109.50888 * 185.69982 * 14 13 11 41 41 H 1.09005 * 109.42847 * 65.42578 * 14 13 11 42 42 H 0.97002 * 119.99648 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.58924 * 66.43354 * 24 15 14 44 44 H 1.09004 * 109.59047 * 186.71645 * 24 15 14 45 45 H 0.96705 * 114.00012 * 180.16053 * 27 25 11 46 46 H 1.07999 * 120.07399 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5807 1.2081 -0.0005 5 6 4.3242 2.5189 -0.0011 6 6 4.2812 0.0196 -0.0016 7 6 3.5911 -1.1937 -0.0016 8 6 4.3353 -2.4712 -0.0033 9 8 5.5508 -2.4664 -0.0052 10 7 3.6660 -3.6409 -0.0038 11 6 4.4034 -4.9068 -0.0061 12 1 5.3126 -4.7964 -0.5969 13 6 4.7718 -5.2848 1.4304 14 6 5.5677 -6.5887 1.4233 15 7 4.7981 -7.6152 0.7074 16 6 4.5304 -8.8228 1.2949 17 1 3.6469 -9.3764 1.0132 18 6 5.3977 -9.3381 2.2484 19 7 6.6188 -8.8586 2.3549 20 14 4.8317 -10.7121 3.3804 21 1 4.4467 -11.8949 2.5691 22 1 5.9369 -11.0823 4.3006 23 1 3.6619 -10.2520 4.1708 24 6 4.3158 -7.3191 -0.6485 25 6 3.5292 -6.0049 -0.6161 26 1 3.2478 -5.7242 -1.6310 27 8 2.3522 -6.1731 0.1767 28 6 2.1953 -1.1955 -0.0053 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.6535 2.1324 0.0004 33 1 4.5027 2.8350 -1.0289 34 1 3.7296 3.2741 0.5131 35 1 5.2779 2.3960 0.5121 36 1 5.3612 0.0279 -0.0024 37 1 2.6959 -3.6448 -0.0027 38 1 5.3749 -4.4914 1.8720 39 1 3.8623 -5.4192 2.0160 40 1 5.7441 -6.9131 2.4488 41 1 6.5210 -6.4289 0.9194 42 1 7.2247 -9.2185 3.0215 43 1 5.1648 -7.2202 -1.3249 44 1 3.6684 -8.1266 -0.9906 45 1 1.7518 -6.8567 -0.1508 46 1 1.6554 -2.1309 -0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090762374.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:00 Heat of formation + Delta-G solvation = -70.568764 kcal Electronic energy + Delta-G solvation = -26861.965900 eV Core-core repulsion = 23136.560178 eV Total energy + Delta-G solvation = -3725.405722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.51114 -40.20591 -39.17306 -36.61467 -35.81279 -34.49698 -33.86254 -33.09076 -31.59832 -30.37302 -28.24835 -27.61493 -27.04937 -25.05304 -23.93840 -23.34515 -21.66309 -21.30512 -20.84276 -19.08659 -18.41318 -17.66237 -17.42286 -17.02877 -16.62576 -16.14231 -16.09103 -15.86908 -15.54659 -15.40661 -15.05216 -14.86873 -14.54197 -14.37456 -14.00504 -13.94054 -13.77312 -13.68721 -13.32032 -13.02279 -12.81089 -12.75965 -12.67377 -12.52592 -12.47654 -12.44387 -12.11113 -12.09150 -11.98796 -11.92393 -11.47995 -11.02525 -10.87571 -10.51552 -10.14753 -9.75713 -9.58779 -8.68854 -7.86845 -5.32267 -0.16405 0.34033 1.46692 1.50430 1.56548 1.79423 2.06901 2.51154 2.80860 3.27805 3.36521 3.55710 3.68192 3.76925 3.83560 3.84813 4.02047 4.13117 4.24679 4.32606 4.33665 4.37116 4.54768 4.66221 4.67825 4.73557 4.82264 4.84605 4.84976 4.89941 4.93204 4.97767 4.99658 5.09803 5.17530 5.28543 5.35647 5.41888 5.45955 5.52075 5.56933 5.62061 5.67056 5.95808 6.36899 6.51024 6.97569 7.13032 7.15854 7.82817 8.35738 9.20180 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.023028 B = 0.002851 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.618717 B = 9819.518004 C =10306.760384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.094 4.094 4 C -0.094 4.094 5 C -0.113 4.113 6 C -0.090 4.090 7 C -0.142 4.142 8 C 0.549 3.451 9 O -0.585 6.585 10 N -0.700 5.700 11 C 0.166 3.834 12 H 0.073 0.927 13 C -0.125 4.125 14 C 0.185 3.815 15 N -0.598 5.598 16 C -0.254 4.254 17 H 0.075 0.925 18 C -0.057 4.057 19 N -0.940 5.940 20 Si 0.970 3.030 21 H -0.271 1.271 22 H -0.299 1.299 23 H -0.279 1.279 24 C 0.111 3.889 25 C 0.101 3.899 26 H 0.087 0.913 27 O -0.563 6.563 28 C -0.096 4.096 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.157 0.843 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.118 0.882 37 H 0.414 0.586 38 H 0.040 0.960 39 H 0.060 0.940 40 H 0.054 0.946 41 H -0.009 1.009 42 H 0.248 0.752 43 H 0.023 0.977 44 H 0.079 0.921 45 H 0.391 0.609 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.407 21.184 -7.884 27.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.112 4.112 4 C -0.094 4.094 5 C -0.169 4.169 6 C -0.109 4.109 7 C -0.145 4.145 8 C 0.338 3.662 9 O -0.466 6.466 10 N -0.350 5.350 11 C 0.062 3.938 12 H 0.091 0.909 13 C -0.166 4.166 14 C 0.058 3.942 15 N -0.320 5.320 16 C -0.384 4.384 17 H 0.093 0.907 18 C -0.252 4.252 19 N -0.586 5.586 20 Si 0.798 3.202 21 H -0.197 1.197 22 H -0.226 1.226 23 H -0.205 1.205 24 C -0.015 4.015 25 C 0.040 3.960 26 H 0.104 0.896 27 O -0.370 6.370 28 C -0.115 4.115 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.174 0.826 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.136 0.864 37 H 0.252 0.748 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.009 0.991 42 H 0.057 0.943 43 H 0.040 0.960 44 H 0.098 0.902 45 H 0.241 0.759 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -14.174 21.554 -7.453 26.852 hybrid contribution 0.189 -1.598 0.525 1.693 sum -13.986 19.956 -6.929 25.335 Atomic orbital electron populations 1.20869 0.88370 1.04106 1.03584 1.20215 0.97959 0.92172 0.98705 1.21507 0.93097 0.98927 0.97701 1.20178 0.94592 0.95369 0.99270 1.20857 1.00047 0.92617 1.03423 1.21203 1.00225 0.91389 0.98064 1.19865 0.94639 0.92322 1.07692 1.18848 0.87008 0.84888 0.75467 1.90745 1.15474 1.88228 1.52172 1.45875 1.11013 1.04476 1.73680 1.20768 0.94418 0.82027 0.96635 0.90869 1.22129 1.00135 0.97534 0.96763 1.20354 0.90587 0.86099 0.97166 1.44077 1.63032 1.12719 1.12216 1.19499 1.03356 0.96589 1.18992 0.90702 1.25862 0.94713 1.01164 1.03450 1.70203 1.05571 1.46381 1.36463 0.85306 0.76768 0.79380 0.78774 1.19650 1.22556 1.20535 1.21806 0.96888 0.96184 0.86640 1.22337 0.85997 0.94006 0.93693 0.89579 1.86408 1.32656 1.61608 1.56351 1.21378 0.91784 0.99625 0.98686 0.89773 0.90853 0.89822 0.82574 0.89973 0.89360 0.91674 0.86423 0.74823 0.94165 0.92149 0.92726 0.99104 0.94271 0.95953 0.90237 0.75920 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.01 71.24 0.71 -0.35 16 2 C -0.09 -1.43 5.87 -19.90 -0.12 -1.55 16 3 C -0.09 -1.40 9.35 22.33 0.21 -1.19 16 4 C -0.09 -1.73 5.87 -19.90 -0.12 -1.85 16 5 C -0.11 -1.42 10.01 71.24 0.71 -0.70 16 6 C -0.09 -2.28 9.24 22.53 0.21 -2.07 16 7 C -0.14 -3.83 5.87 -20.09 -0.12 -3.95 16 8 C 0.55 18.57 7.74 86.79 0.67 19.25 16 9 O -0.58 -24.79 16.01 -3.88 -0.06 -24.85 16 10 N -0.70 -21.47 5.00 -445.29 -2.23 -23.69 16 11 C 0.17 6.07 2.20 45.02 0.10 6.17 16 12 H 0.07 2.98 7.58 -2.39 -0.02 2.96 16 13 C -0.13 -5.48 5.49 30.53 0.17 -5.31 16 14 C 0.18 9.63 5.28 86.22 0.45 10.08 16 15 N -0.60 -30.01 2.94 -699.92 -2.06 -32.06 16 16 C -0.25 -13.82 9.58 84.03 0.81 -13.02 16 17 H 0.08 3.83 7.88 -2.91 -0.02 3.81 16 18 C -0.06 -3.23 4.92 84.86 0.42 -2.81 16 19 N -0.94 -57.42 11.18 21.65 0.24 -57.18 16 20 Si 0.97 45.38 29.59 68.60 2.03 47.41 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 C 0.11 4.33 6.16 86.36 0.53 4.86 16 25 C 0.10 3.15 3.38 30.67 0.10 3.26 16 26 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 27 O -0.56 -16.57 12.09 -148.98 -1.80 -18.37 16 28 C -0.10 -1.95 9.19 22.53 0.21 -1.74 16 29 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.67 8.09 -2.38 -0.02 0.65 16 31 H 0.08 0.54 8.08 -2.39 -0.02 0.52 16 32 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.09 0.74 8.08 -2.38 -0.02 0.72 16 35 H 0.06 0.88 8.08 -2.38 -0.02 0.86 16 36 H 0.12 3.28 7.65 -2.91 -0.02 3.26 16 37 H 0.41 10.31 6.29 -92.70 -0.58 9.73 16 38 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.06 2.69 7.61 -2.39 -0.02 2.68 16 40 H 0.05 3.22 6.05 -2.39 -0.01 3.20 16 41 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 42 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 43 H 0.02 0.90 8.14 -2.39 -0.02 0.89 16 44 H 0.08 2.79 7.93 -2.39 -0.02 2.78 16 45 H 0.39 8.45 9.08 -74.05 -0.67 7.77 16 46 H 0.14 2.34 6.41 -2.91 -0.02 2.32 16 Total: -1.00 -75.13 372.34 0.82 -74.31 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -0.26 Total: 25.35 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 4.95 Total: 9.09 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -4.04 Total: -112.94 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: -1.86 Total: -43.22 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -75.13 0.82 -74.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090762374.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.741 kcal (2) G-P(sol) polarization free energy of solvation -75.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds