Wall clock time and date at job start Tue Mar 31 2020 05:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 115.56538 * 2 1 4 4 C 1.53000 * 117.49795 * 145.68610 * 2 1 3 5 5 C 1.52998 * 117.49994 * 214.30858 * 2 1 3 6 6 H 1.09000 * 117.51579 * 359.97438 * 5 2 1 7 7 C 1.50697 * 117.50250 * 145.02372 * 5 2 1 8 8 O 1.21278 * 119.99640 * 0.02562 * 7 5 2 9 9 N 1.34771 * 120.00356 * 180.02562 * 7 5 2 10 10 C 1.48156 * 127.83630 * 0.02562 * 9 7 5 11 11 C 1.54383 * 104.61323 * 219.58391 * 10 9 7 12 12 H 1.09002 * 117.04414 * 114.64905 * 11 10 9 13 13 C 1.57119 * 118.20510 * 273.79459 * 11 10 9 14 14 C 1.52994 * 59.65286 * 91.04228 * 13 11 10 15 15 C 1.50699 * 119.54235 * 112.44682 * 14 13 11 16 16 O 1.21278 * 120.00597 * 289.93461 * 15 14 13 17 17 N 1.34780 * 119.99850 * 109.92599 * 15 14 13 18 18 C 1.47066 * 136.05524 * 180.02562 * 17 15 14 19 19 C 1.53503 * 87.98596 * 207.08426 * 18 17 15 20 20 C 1.50694 * 114.20797 * 220.34532 * 19 18 17 21 21 H 1.07997 * 120.00323 * 359.97438 * 20 19 18 22 22 C 1.37877 * 119.99852 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99942 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00024 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47002 * 60.00185 * 24 22 20 26 26 H 1.48506 * 109.47193 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47403 * 300.00033 * 24 22 20 28 28 C 1.47060 * 136.05896 * 359.95560 * 17 15 14 29 29 C 1.48147 * 127.83968 * 179.97438 * 9 7 5 30 30 H 1.08996 * 109.47630 * 205.68947 * 1 2 3 31 31 H 1.09008 * 109.47021 * 325.69105 * 1 2 3 32 32 H 1.08999 * 109.47237 * 85.68688 * 1 2 3 33 33 H 1.09009 * 117.49952 * 0.02562 * 4 2 1 34 34 H 1.08998 * 117.52444 * 214.97321 * 4 2 1 35 35 H 1.08996 * 110.40308 * 338.36612 * 10 9 7 36 36 H 1.09000 * 110.40450 * 100.67871 * 10 9 7 37 37 H 1.09002 * 117.15311 * 343.59384 * 13 11 10 38 38 H 1.08999 * 118.28147 * 197.98644 * 13 11 10 39 39 H 1.09000 * 113.46827 * 321.86030 * 18 17 15 40 40 H 1.09003 * 113.47151 * 92.30820 * 18 17 15 41 41 H 1.08999 * 114.20584 * 87.51845 * 19 18 17 42 42 H 0.97001 * 120.00003 * 179.97438 * 23 22 20 43 43 H 1.09006 * 113.47077 * 267.69492 * 28 17 15 44 44 H 1.09003 * 113.47044 * 38.07057 * 28 17 15 45 45 H 1.08992 * 110.40469 * 21.63108 * 29 9 7 46 46 H 1.09007 * 110.50661 * 259.25006 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2364 -1.1210 0.7651 5 6 2.2364 -1.1210 -0.7649 6 1 1.6115 -1.8589 -1.2679 7 6 3.5293 -0.7812 -1.4607 8 8 3.9720 0.3462 -1.4007 9 7 4.1935 -1.7302 -2.1496 10 6 3.8149 -3.1504 -2.3361 11 6 5.1461 -3.9253 -2.2315 12 1 5.2586 -4.6054 -1.3871 13 6 6.0141 -4.0890 -3.5308 14 6 6.2358 -2.8966 -2.5983 15 6 7.5223 -2.7906 -1.8206 16 8 7.7459 -3.5601 -0.9103 17 7 8.4246 -1.8406 -2.1369 18 6 9.7452 -1.4270 -1.6392 19 6 9.4354 -0.0135 -2.1513 20 6 10.6054 0.6784 -2.8019 21 1 11.5583 0.1752 -2.8741 22 6 10.4594 1.9538 -3.3049 23 7 9.2992 2.5667 -3.2165 24 14 11.9100 2.8117 -4.1107 25 1 12.3697 2.0163 -5.2774 26 1 11.4953 4.1631 -4.5660 27 1 13.0179 2.9376 -3.1299 28 6 8.5223 -0.7624 -3.1321 29 6 5.4672 -1.5898 -2.8930 30 1 -0.3634 -0.9260 0.4455 31 1 -0.3633 0.8489 0.5793 32 1 -0.3634 0.0773 -1.0247 33 1 1.6111 -1.8587 1.2681 34 1 3.1716 -0.8756 1.2684 35 1 3.1282 -3.4669 -1.5511 36 1 3.3633 -3.2977 -3.3172 37 1 5.5231 -3.8962 -4.4847 38 1 6.7802 -4.8642 -3.5459 39 1 9.8382 -1.4851 -0.5547 40 1 10.5747 -1.9052 -2.1602 41 1 8.9039 0.6144 -1.4362 42 1 9.1966 3.4641 -3.5701 43 1 9.0263 -1.0637 -4.0505 44 1 7.5751 -0.2561 -3.3181 45 1 6.0271 -0.7287 -2.5283 46 1 5.2768 -1.4933 -3.9620 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001271391594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:30 Heat of formation + Delta-G solvation = 34.540793 kcal Electronic energy + Delta-G solvation = -27062.902797 eV Core-core repulsion = 23342.054967 eV Total energy + Delta-G solvation = -3720.847830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.173 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.80027 -39.54261 -38.50029 -36.95946 -36.49883 -33.49861 -32.68043 -29.83486 -29.12805 -28.31180 -26.64687 -25.38417 -24.98443 -23.53835 -22.42749 -21.24587 -20.91239 -19.77044 -19.13976 -18.16243 -17.25145 -16.78424 -16.16635 -16.12104 -15.69725 -15.17117 -14.77315 -14.54007 -14.37291 -14.24474 -13.88901 -13.49130 -13.28554 -13.10388 -12.96275 -12.51409 -12.38474 -12.30257 -12.11415 -11.85412 -11.70440 -11.59344 -11.47149 -11.31293 -10.94946 -10.83168 -10.56056 -10.52378 -10.36957 -10.24723 -10.21471 -9.71233 -9.59276 -9.21101 -9.02344 -8.74883 -8.55973 -7.89757 -6.14828 -4.21869 2.46847 2.75319 2.85486 3.26708 3.32156 3.32998 3.35840 3.56216 3.65727 4.28444 4.34838 4.38415 4.42878 4.57441 4.60104 4.75374 4.85141 4.91030 5.00938 5.10381 5.13986 5.26042 5.36625 5.39055 5.49563 5.52202 5.53146 5.64868 5.74669 5.77685 5.82480 5.89732 5.99389 6.05291 6.09688 6.14957 6.17321 6.24824 6.43497 6.56474 6.65616 6.82627 7.50103 7.56875 7.81654 8.17707 8.19154 8.46348 8.71087 8.81850 9.44929 10.94425 Molecular weight = 318.17amu Principal moments of inertia in cm(-1) A = 0.012881 B = 0.003645 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.183539 B = 7679.901962 C = 9100.841053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.123 4.123 3 H 0.119 0.881 4 C -0.148 4.148 5 C -0.186 4.186 6 H 0.122 0.878 7 C 0.561 3.439 8 O -0.527 6.527 9 N -0.621 5.621 10 C 0.129 3.871 11 C -0.149 4.149 12 H 0.132 0.868 13 C -0.106 4.106 14 C -0.170 4.170 15 C 0.575 3.425 16 O -0.564 6.564 17 N -0.636 5.636 18 C 0.100 3.900 19 C 0.036 3.964 20 C -0.520 4.520 21 H 0.063 0.937 22 C 0.069 3.931 23 N -0.882 5.882 24 Si 0.896 3.104 25 H -0.275 1.275 26 H -0.287 1.287 27 H -0.275 1.275 28 C 0.095 3.905 29 C 0.137 3.863 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.265 0.735 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.102 0.898 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.576 -11.053 0.360 19.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.141 4.141 3 H 0.137 0.863 4 C -0.186 4.186 5 C -0.207 4.207 6 H 0.140 0.860 7 C 0.351 3.649 8 O -0.403 6.403 9 N -0.355 5.355 10 C 0.006 3.994 11 C -0.168 4.168 12 H 0.149 0.851 13 C -0.144 4.144 14 C -0.174 4.174 15 C 0.364 3.636 16 O -0.444 6.444 17 N -0.368 5.368 18 C -0.021 4.021 19 C 0.017 3.983 20 C -0.558 4.558 21 H 0.081 0.919 22 C -0.135 4.135 23 N -0.518 5.518 24 Si 0.723 3.277 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.201 1.201 28 C -0.027 4.027 29 C 0.015 3.985 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.120 0.880 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.545 -10.683 0.951 19.717 hybrid contribution 0.847 0.336 -0.636 1.111 sum -15.697 -10.347 0.315 18.803 Atomic orbital electron populations 1.21393 0.92194 1.02170 1.02153 1.22413 0.95166 0.95271 1.01270 0.86332 1.23120 1.03266 1.01458 0.90707 1.22231 0.97351 1.05317 0.95839 0.86026 1.19314 0.84436 0.83659 0.77538 1.90777 1.68306 1.20422 1.60761 1.49148 1.24130 1.10247 1.51959 1.21886 0.95284 0.80050 1.02139 1.24422 0.90453 1.01098 1.00874 0.85054 1.23687 1.00645 0.96817 0.93242 1.22716 0.96017 0.92805 1.05885 1.18547 0.82973 0.78930 0.83163 1.90633 1.78917 1.43020 1.31868 1.49898 1.19207 1.31149 1.36518 1.23381 0.83259 0.96646 0.98848 1.20337 0.94941 0.89305 0.93708 1.20835 0.96196 0.99940 1.38843 0.91877 1.25039 0.95859 0.97052 0.95545 1.69955 1.23293 1.13829 1.44731 0.86601 0.82599 0.78680 0.79802 1.20087 1.21207 1.20064 1.23750 1.00607 0.84417 0.93914 1.21876 0.83806 0.96519 0.96295 0.92413 0.91617 0.91967 0.87753 0.88136 0.89424 0.90370 0.87621 0.87156 0.92471 0.90720 0.91357 0.92497 0.90626 0.91902 0.88013 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.19 37.16 0.38 -0.54 16 2 C -0.12 -1.29 5.92 -90.62 -0.54 -1.82 16 3 H 0.12 1.51 7.67 -51.93 -0.40 1.11 16 4 C -0.15 -1.49 9.88 -26.73 -0.26 -1.76 16 5 C -0.19 -2.07 5.03 -91.77 -0.46 -2.53 16 6 H 0.12 1.03 7.65 -51.93 -0.40 0.63 16 7 C 0.56 8.80 7.70 -10.99 -0.08 8.72 16 8 O -0.53 -10.75 16.52 5.56 0.09 -10.66 16 9 N -0.62 -8.85 3.32 -169.27 -0.56 -9.41 16 10 C 0.13 1.30 6.65 -2.41 -0.02 1.29 16 11 C -0.15 -1.77 6.95 -86.99 -0.60 -2.38 16 12 H 0.13 1.62 8.14 -51.93 -0.42 1.20 16 13 C -0.11 -1.19 10.09 -24.50 -0.25 -1.44 16 14 C -0.17 -2.62 2.61 -154.23 -0.40 -3.02 16 15 C 0.58 11.54 7.68 -10.98 -0.08 11.46 16 16 O -0.56 -12.81 17.59 5.56 0.10 -12.72 16 17 N -0.64 -13.28 3.61 -185.22 -0.67 -13.95 16 18 C 0.10 2.15 8.18 -8.51 -0.07 2.08 16 19 C 0.04 0.87 3.79 -91.25 -0.35 0.53 16 20 C -0.52 -13.41 8.82 -34.44 -0.30 -13.71 16 21 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 22 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 23 N -0.88 -24.63 13.26 55.43 0.74 -23.89 16 24 Si 0.90 20.32 29.54 -169.99 -5.02 15.29 16 25 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 26 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 28 C 0.10 2.04 7.43 -8.51 -0.06 1.98 16 29 C 0.14 2.16 5.84 -2.37 -0.01 2.15 16 30 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 31 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.10 0.79 8.05 -51.92 -0.42 0.37 16 34 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.09 0.71 7.21 -51.93 -0.37 0.34 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.07 1.51 8.10 -51.93 -0.42 1.09 16 41 H 0.07 1.84 8.11 -51.93 -0.42 1.42 16 42 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 44 H 0.06 1.36 5.89 -51.93 -0.31 1.05 16 45 H 0.10 2.00 5.64 -51.93 -0.29 1.71 16 46 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 381.06 15.07 5.74 5.74 Total: -1.00 -32.74 381.06 -10.01 -42.75 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.21 Total: 4.11 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -3.22 Total: 2.73 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: -0.50 Total: -47.25 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: 0.19 Total: -23.37 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.74 -10.01 -42.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271391594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.287 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds