Wall clock time and date at job start Tue Mar 31 2020 04:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30597 * 125.86729 * 2 1 4 4 N 1.39956 * 108.95720 * 179.72342 * 3 2 1 5 5 C 1.46503 * 125.86358 * 180.30617 * 4 3 2 6 6 C 1.35157 * 108.27328 * 0.42944 * 4 3 2 7 7 N 1.38822 * 126.37961 * 179.84703 * 6 4 3 8 8 C 1.46897 * 111.00377 * 70.31171 * 7 6 4 9 9 C 1.53235 * 109.34265 * 172.74722 * 8 7 6 10 10 N 1.47078 * 108.52575 * 53.82674 * 9 8 7 11 11 C 1.36932 * 120.88432 * 128.83240 * 10 9 8 12 12 H 1.08004 * 120.00303 * 206.77909 * 11 10 9 13 13 C 1.38816 * 120.00112 * 26.78545 * 11 10 9 14 14 N 1.31628 * 119.99560 * 16.36154 * 13 11 10 15 15 Si 1.86793 * 120.00483 * 196.36629 * 13 11 10 16 16 H 1.48501 * 109.47062 * 59.99638 * 15 13 11 17 17 H 1.48500 * 109.47421 * 179.97438 * 15 13 11 18 18 H 1.48508 * 109.47022 * 299.99858 * 15 13 11 19 19 C 1.47085 * 118.23647 * 308.81963 * 10 9 8 20 20 C 1.46904 * 111.00166 * 306.00647 * 7 6 4 21 21 C 1.38366 * 107.23852 * 359.58260 * 6 4 3 22 22 C 1.48342 * 126.37352 * 180.24418 * 21 6 4 23 23 N 1.33719 * 126.31534 * 0.02562 * 22 21 6 24 24 N 1.28562 * 109.85192 * 180.02562 * 23 22 21 25 25 N 1.28915 * 109.73324 * 359.97438 * 24 23 22 26 26 H 0.97001 * 126.43247 * 179.97438 * 25 24 23 27 27 N 1.32031 * 126.31804 * 179.71392 * 22 21 6 28 28 H 1.09005 * 109.47049 * 270.02019 * 1 2 3 29 29 H 1.08997 * 109.46991 * 30.01948 * 1 2 3 30 30 H 1.08999 * 109.47363 * 150.02412 * 1 2 3 31 31 H 1.08994 * 109.46854 * 264.83794 * 5 4 3 32 32 H 1.09007 * 109.46620 * 24.83736 * 5 4 3 33 33 H 1.08995 * 109.46855 * 144.83331 * 5 4 3 34 34 H 1.09001 * 109.49121 * 292.70359 * 8 7 6 35 35 H 1.08996 * 109.49355 * 52.78295 * 8 7 6 36 36 H 1.08997 * 109.63027 * 294.11505 * 9 8 7 37 37 H 1.09001 * 109.62979 * 173.53799 * 9 8 7 38 38 H 0.97003 * 119.99606 * 180.02562 * 14 13 11 39 39 H 1.09002 * 109.62482 * 291.47409 * 19 10 9 40 40 H 1.08995 * 109.62878 * 170.89162 * 19 10 9 41 41 H 1.09002 * 109.49151 * 307.21305 * 20 7 6 42 42 H 1.09001 * 109.49203 * 67.29165 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2722 1.0583 0.0000 4 7 3.6112 0.6512 0.0064 5 6 4.7777 1.5375 0.0148 6 6 3.6434 -0.6999 0.0007 7 7 4.7804 -1.4965 0.0012 8 6 5.4723 -1.4257 1.2951 9 6 6.6114 -2.4504 1.3182 10 7 7.4663 -2.2253 0.1427 11 6 8.8228 -2.0932 0.2751 12 1 9.3834 -1.5240 -0.4517 13 6 9.4774 -2.6908 1.3434 14 7 8.8774 -3.6337 2.0387 15 14 11.2097 -2.1569 1.7943 16 1 11.2090 -0.7120 2.1369 17 1 11.6813 -2.9421 2.9632 18 1 12.1159 -2.3918 0.6414 19 6 6.8255 -2.1463 -1.1789 20 6 5.6780 -1.1335 -1.1036 21 6 2.3320 -1.1414 0.0004 22 6 1.8793 -2.5540 0.0002 23 7 2.6637 -3.6370 0.0007 24 7 1.9404 -4.6999 -0.0003 25 7 0.6923 -4.3771 -0.0009 26 1 -0.0608 -4.9884 -0.0020 27 7 0.6276 -2.9740 0.0052 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5134 31 1 5.1285 1.6860 -1.0064 32 1 4.5003 2.4990 0.4472 33 1 5.5719 1.0871 0.6100 34 1 5.8806 -0.4248 1.4349 35 1 4.7678 -1.6469 2.0968 36 1 6.1981 -3.4583 1.2827 37 1 7.1989 -2.3244 2.2277 38 1 9.3347 -4.0511 2.7854 39 1 6.4326 -3.1250 -1.4544 40 1 7.5545 -1.8192 -1.9202 41 1 5.1226 -1.1429 -2.0415 42 1 6.0833 -0.1366 -0.9304 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609458967.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:17 Heat of formation + Delta-G solvation = 248.590982 kcal Electronic energy + Delta-G solvation = -27608.137045 eV Core-core repulsion = 23857.616287 eV Total energy + Delta-G solvation = -3750.520758 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.84413 -41.42390 -38.09096 -34.79346 -34.14972 -32.96614 -32.37527 -31.41993 -30.12265 -29.89202 -28.81329 -26.53162 -25.53602 -24.11028 -23.14218 -22.77524 -22.61835 -20.18392 -19.99366 -19.00027 -18.44316 -17.20011 -16.37534 -16.24913 -15.58102 -15.32446 -14.67309 -14.56281 -14.46348 -13.82902 -13.71916 -13.57705 -13.43218 -13.35455 -13.16502 -12.55807 -12.49165 -12.18118 -12.10439 -11.79347 -11.62922 -11.15499 -10.99671 -10.84156 -10.78187 -10.66993 -10.48906 -10.47178 -10.43523 -10.22867 -9.84144 -9.76947 -9.07525 -8.57865 -8.33232 -8.12376 -6.72403 -5.81140 -3.23665 1.04109 1.70501 2.18425 2.23664 2.50053 3.25838 3.36138 3.42485 3.42970 3.86141 4.05583 4.39035 4.46635 4.66060 4.97612 5.10909 5.22376 5.31219 5.31670 5.36737 5.49255 5.59516 5.62069 5.68369 5.76782 5.87669 5.88952 5.96022 5.97747 6.06462 6.12801 6.41121 6.46033 6.55172 6.63728 6.73812 6.86055 7.08931 7.44948 7.61652 7.65306 7.71307 7.76335 8.38951 8.50421 9.16870 9.79610 10.38129 11.27655 Molecular weight = 318.16amu Principal moments of inertia in cm(-1) A = 0.016619 B = 0.004240 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.413414 B = 6602.125125 C = 7768.054339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.118 3.882 3 N -0.300 5.300 4 N -0.383 5.383 5 C 0.090 3.910 6 C 0.329 3.671 7 N -0.447 5.447 8 C 0.038 3.962 9 C 0.181 3.819 10 N -0.594 5.594 11 C -0.256 4.256 12 H 0.066 0.934 13 C 0.004 3.996 14 N -0.900 5.900 15 Si 0.903 3.097 16 H -0.285 1.285 17 H -0.290 1.290 18 H -0.283 1.283 19 C 0.151 3.849 20 C 0.037 3.963 21 C -0.176 4.176 22 C 0.307 3.693 23 N -0.262 5.262 24 N 0.000 5.000 25 N -0.315 5.315 26 H 0.463 0.537 27 N -0.314 5.314 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.032 0.968 35 H 0.067 0.933 36 H 0.037 0.963 37 H 0.094 0.906 38 H 0.255 0.745 39 H 0.034 0.966 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.123 5.747 -3.789 17.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.050 4.050 3 N -0.122 5.122 4 N -0.166 5.166 5 C -0.051 4.051 6 C 0.104 3.896 7 N -0.171 5.171 8 C -0.089 4.089 9 C 0.055 3.945 10 N -0.317 5.317 11 C -0.386 4.386 12 H 0.084 0.916 13 C -0.195 4.195 14 N -0.544 5.544 15 Si 0.732 3.268 16 H -0.211 1.211 17 H -0.216 1.216 18 H -0.209 1.209 19 C 0.024 3.976 20 C -0.091 4.091 21 C -0.192 4.192 22 C 0.026 3.974 23 N -0.140 5.140 24 N 0.004 4.996 25 N -0.160 5.160 26 H 0.316 0.684 27 N -0.158 5.158 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.050 0.950 35 H 0.086 0.914 36 H 0.056 0.944 37 H 0.112 0.888 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -15.947 5.923 -3.706 17.410 hybrid contribution 0.669 0.223 0.389 0.805 sum -15.278 6.146 -3.317 16.799 Atomic orbital electron populations 1.20274 0.86019 1.03623 1.03276 1.22154 0.96889 0.88753 0.97252 1.77124 0.86005 1.22256 1.26855 1.49311 1.05914 1.05367 1.56051 1.22252 0.84357 0.94723 1.03785 1.20290 0.93752 0.81105 0.94499 1.59775 1.05227 1.45986 1.06115 1.23126 0.97577 1.00769 0.87391 1.20893 0.87594 0.93714 0.92294 1.44120 1.03122 1.84507 0.99947 1.19126 0.82742 1.26204 1.10497 0.91581 1.25042 0.97724 0.96148 1.00537 1.70013 1.37829 1.24563 1.22022 0.86375 0.84511 0.78014 0.77855 1.21141 1.21612 1.20885 1.20953 0.91528 0.95607 0.89486 1.22942 0.94732 0.99447 0.91984 1.16632 0.90476 0.86995 1.25135 1.22400 0.85856 0.93786 0.95386 1.75851 1.25627 0.93301 1.19196 1.78451 0.89374 1.22401 1.09421 1.51006 1.07750 1.05309 1.51928 0.68397 1.78773 1.20234 0.88747 1.28084 0.90350 0.90875 0.89423 0.90290 0.88918 0.88728 0.94952 0.91436 0.94443 0.88843 0.93453 0.94793 0.92101 0.91473 0.94267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.04 36.01 0.36 -0.42 16 2 C 0.12 1.72 7.24 -82.14 -0.59 1.12 16 3 N -0.30 -4.57 12.51 33.83 0.42 -4.15 16 4 N -0.38 -5.78 4.01 -66.77 -0.27 -6.05 16 5 C 0.09 1.08 9.59 59.85 0.57 1.65 16 6 C 0.33 5.50 5.52 -153.07 -0.84 4.66 16 7 N -0.45 -8.05 4.27 -172.41 -0.74 -8.78 16 8 C 0.04 0.74 5.40 -3.70 -0.02 0.72 16 9 C 0.18 4.23 5.41 -3.61 -0.02 4.21 16 10 N -0.59 -14.30 3.04 -172.01 -0.52 -14.82 16 11 C -0.26 -6.74 9.63 -15.06 -0.15 -6.88 16 12 H 0.07 1.69 7.88 -52.48 -0.41 1.28 16 13 C 0.00 0.12 4.95 -17.42 -0.09 0.03 16 14 N -0.90 -25.52 11.13 55.49 0.62 -24.90 16 15 Si 0.90 21.06 29.58 -169.99 -5.03 16.03 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C 0.15 3.08 6.69 -3.60 -0.02 3.06 16 20 C 0.04 0.64 5.19 -3.70 -0.02 0.62 16 21 C -0.18 -2.88 6.16 -104.71 -0.64 -3.52 16 22 C 0.31 5.03 8.10 -156.43 -1.27 3.76 16 23 N -0.26 -4.69 11.95 32.11 0.38 -4.31 16 24 N 0.00 0.00 13.42 60.35 0.81 0.81 16 25 N -0.31 -3.62 8.44 60.35 0.51 -3.11 16 26 H 0.46 2.98 8.96 -331.92 -2.98 0.00 16 27 N -0.31 -4.30 11.13 32.13 0.36 -3.94 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.93 6.69 -51.93 -0.35 0.58 16 31 H 0.08 0.85 7.66 -51.93 -0.40 0.45 16 32 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 33 H 0.09 1.21 5.09 -51.93 -0.26 0.95 16 34 H 0.03 0.59 5.80 -51.93 -0.30 0.29 16 35 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 36 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 2.41 6.11 -51.93 -0.32 2.09 16 38 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 1.17 7.95 -51.93 -0.41 0.76 16 41 H 0.07 1.08 8.09 -51.93 -0.42 0.66 16 42 H 0.04 0.63 5.37 -51.93 -0.28 0.35 16 LS Contribution 341.44 15.07 5.15 5.15 Total: -1.00 -32.07 341.44 -8.84 -40.91 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -7.80 Total: -1.83 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: -2.73 Total: 9.00 kcal Atomic # 7 Polarization: -70.83 SS G_CDS: 1.58 Total: -69.25 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.07 -8.84 -40.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609458967.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 289.501 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 257.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 248.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds