Wall clock time and date at job start Tue Mar 31 2020 04:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99865 * 2 1 4 4 C 1.52996 * 109.47529 * 270.00535 * 3 2 1 5 5 C 1.52995 * 109.47215 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.47257 * 179.97438 * 5 4 3 7 7 C 1.36940 * 120.00118 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00269 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00004 * 180.02562 * 7 6 5 10 10 N 1.31620 * 119.99803 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99984 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47239 * 60.00138 * 11 9 7 13 13 H 1.48503 * 109.47061 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47523 * 299.99772 * 11 9 7 15 15 C 1.34773 * 120.00166 * 180.02562 * 2 1 3 16 16 O 1.21274 * 120.00103 * 179.97438 * 15 2 1 17 17 C 1.50700 * 120.00034 * 0.02562 * 15 2 1 18 18 C 1.50703 * 109.47503 * 180.02562 * 17 15 2 19 19 N 1.32605 * 125.18616 * 90.01577 * 18 17 15 20 20 C 1.32824 * 109.75602 * 179.97438 * 19 18 17 21 21 N 1.33825 * 132.50775 * 180.28766 * 20 19 18 22 22 C 1.31353 * 120.86579 * 180.24635 * 21 20 19 23 23 C 1.40036 * 120.31119 * 359.44320 * 22 21 20 24 24 C 1.35784 * 119.24227 * 0.27058 * 23 22 21 25 25 N 1.35978 * 119.01691 * 0.02562 * 24 23 22 26 26 N 1.31185 * 125.18200 * 269.99908 * 18 17 15 27 27 H 1.09007 * 109.47232 * 269.99223 * 1 2 3 28 28 H 1.09001 * 109.47426 * 29.99738 * 1 2 3 29 29 H 1.09006 * 109.47142 * 149.99741 * 1 2 3 30 30 H 1.09001 * 109.47026 * 30.00674 * 3 2 1 31 31 H 1.08994 * 109.46852 * 149.99680 * 3 2 1 32 32 H 1.09001 * 109.47080 * 300.00106 * 4 3 2 33 33 H 1.08999 * 109.46882 * 59.99841 * 4 3 2 34 34 H 1.09001 * 109.47186 * 300.00045 * 5 4 3 35 35 H 1.09005 * 109.47156 * 59.99725 * 5 4 3 36 36 H 0.97005 * 120.00063 * 0.02562 * 6 5 4 37 37 H 0.97011 * 119.99737 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.47590 * 59.99762 * 17 15 2 39 39 H 1.09002 * 109.46962 * 299.99482 * 17 15 2 40 40 H 1.08002 * 119.84074 * 179.74397 * 22 21 20 41 41 H 1.08000 * 120.37922 * 180.30290 * 23 22 21 42 42 H 1.07999 * 120.48773 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7106 -1.4424 5 6 3.2168 3.0359 -1.4423 6 7 3.4614 3.4586 -2.8235 7 6 4.1337 4.6251 -3.0736 8 1 4.4840 5.2332 -2.2528 9 6 4.3650 5.0259 -4.3823 10 7 3.9377 4.2851 -5.3828 11 14 5.2815 6.6175 -4.7236 12 1 6.6388 6.5452 -4.1253 13 1 5.3977 6.8170 -6.1905 14 1 4.5372 7.7552 -4.1262 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1671 -0.0010 17 6 1.3855 -2.4723 -0.0017 18 6 2.3647 -3.6178 -0.0014 19 7 2.8602 -4.1993 1.0824 20 6 3.6921 -5.1726 0.7293 21 7 4.4244 -6.0385 1.4398 22 6 5.1893 -6.9235 0.8422 23 6 5.2420 -6.9829 -0.5559 24 6 4.4981 -6.1121 -1.2853 25 7 3.7211 -5.2040 -0.6366 26 7 2.8567 -4.1918 -1.0735 27 1 -0.3634 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6084 2.0283 0.5139 31 1 3.1498 1.1384 0.5139 32 1 3.0415 0.9510 -1.9564 33 1 1.5000 1.8409 -1.9562 34 1 2.6273 3.7953 -0.9285 35 1 4.1693 2.9060 -0.9284 36 1 3.1465 2.9126 -3.5609 37 1 4.0997 4.5650 -6.2974 38 1 0.7591 -2.5295 -0.8919 39 1 0.7585 -2.5307 0.8881 40 1 5.7766 -7.6117 1.4320 41 1 5.8667 -7.7133 -1.0483 42 1 4.5231 -6.1404 -2.3646 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754413934.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:39:19 Heat of formation + Delta-G solvation = 121.741546 kcal Electronic energy + Delta-G solvation = -25226.059896 eV Core-core repulsion = 21437.745782 eV Total energy + Delta-G solvation = -3788.314114 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.22870 -40.08139 -39.03625 -36.17683 -34.93140 -34.80631 -32.96170 -32.09522 -31.04182 -30.27676 -29.17528 -26.94778 -25.44783 -24.89986 -24.10420 -22.86807 -21.56602 -20.85521 -19.28051 -18.76890 -18.42676 -17.46076 -17.01206 -16.75723 -16.60917 -16.11301 -15.62183 -14.97609 -14.57761 -14.49335 -13.97699 -13.79465 -13.63340 -13.46763 -13.16095 -13.05334 -12.97314 -12.94168 -12.57652 -12.43204 -12.29695 -11.87848 -11.77905 -10.88990 -10.80364 -10.71495 -10.47183 -10.39445 -10.35117 -10.15749 -10.06093 -9.74847 -9.65359 -9.15265 -8.81856 -8.67848 -6.86919 -5.71438 -3.00008 0.01867 0.34266 1.52755 2.11457 2.55256 2.79168 2.99750 3.12607 3.47650 3.51237 3.52862 3.54544 3.86264 4.08615 4.36723 4.41193 4.56852 4.64020 4.85208 4.88855 5.00627 5.03638 5.19703 5.27695 5.39190 5.47781 5.53253 5.61094 5.74164 5.75784 5.84543 5.89668 5.95825 6.12936 6.34366 6.43725 6.53914 6.91364 6.93573 7.04027 7.28335 7.60206 7.74007 8.09709 8.47637 9.58202 10.17215 10.51914 11.51678 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.002295 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.912251 B =12195.918513 C =13310.045093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.613 5.613 3 C 0.120 3.880 4 C -0.139 4.139 5 C 0.156 3.844 6 N -0.734 5.734 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.016 4.016 10 N -0.935 5.935 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.521 3.479 16 O -0.524 6.524 17 C -0.051 4.051 18 C 0.299 3.701 19 N -0.512 5.512 20 C 0.442 3.558 21 N -0.455 5.455 22 C 0.205 3.795 23 C -0.227 4.227 24 C 0.176 3.824 25 N -0.325 5.325 26 N -0.318 5.318 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.019 0.981 35 H 0.020 0.980 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.191 0.809 41 H 0.175 0.825 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.726 -26.667 12.259 29.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.347 5.347 3 C -0.002 4.002 4 C -0.178 4.178 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.212 4.212 10 N -0.584 5.584 11 Si 0.740 3.260 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.213 1.213 15 C 0.306 3.694 16 O -0.399 6.399 17 C -0.094 4.094 18 C 0.017 3.983 19 N -0.244 5.244 20 C 0.082 3.918 21 N -0.169 5.169 22 C 0.019 3.981 23 C -0.252 4.252 24 C 0.038 3.962 25 N -0.104 5.104 26 N -0.149 5.149 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.038 0.962 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.208 0.792 41 H 0.193 0.807 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -5.573 -25.840 12.846 29.390 hybrid contribution 0.628 0.444 -1.472 1.661 sum -4.945 -25.395 11.374 28.262 Atomic orbital electron populations 1.21894 0.79313 1.03773 1.02026 1.47813 1.07110 1.06069 1.73672 1.21513 0.97546 0.83143 0.98030 1.22056 1.01100 0.98957 0.95683 1.20541 0.96054 0.91897 0.88696 1.42351 1.68373 1.25913 1.01118 1.19213 1.27840 0.98100 0.91794 0.91193 1.24758 1.01801 0.99093 0.95565 1.69664 1.51614 1.38988 0.98154 0.86237 0.79698 0.83269 0.76812 1.21272 1.21694 1.21255 1.20000 0.87920 0.84630 0.76832 1.90775 1.13719 1.86988 1.48405 1.20096 0.95206 0.87032 1.07024 1.23516 0.94665 0.94953 0.85153 1.70656 1.15451 1.09891 1.28404 1.22708 0.95618 0.94826 0.78698 1.68010 1.08084 1.04578 1.36209 1.23593 0.90263 0.91686 0.92580 1.21963 1.04488 1.03206 0.95524 1.22215 0.87475 0.85554 1.00979 1.48759 1.29344 1.22993 1.09328 1.78578 1.11767 1.04111 1.20403 0.92186 0.90257 0.91042 0.90238 0.89748 0.91641 0.91910 0.96339 0.96248 0.78329 0.93512 0.85735 0.85413 0.79242 0.80741 0.79908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.56 10.24 59.85 0.61 1.17 16 2 N -0.61 -7.58 2.87 -181.57 -0.52 -8.10 16 3 C 0.12 1.72 5.41 -4.04 -0.02 1.69 16 4 C -0.14 -2.46 5.65 -26.74 -0.15 -2.61 16 5 C 0.16 3.36 6.26 -4.05 -0.03 3.34 16 6 N -0.73 -19.86 5.60 -59.91 -0.34 -20.20 16 7 C -0.24 -7.01 9.99 -15.06 -0.15 -7.16 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 10 N -0.94 -29.38 13.06 55.49 0.72 -28.65 16 11 Si 0.91 23.15 29.55 -169.99 -5.02 18.12 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 14 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 15 C 0.52 7.55 7.67 -10.99 -0.08 7.47 16 16 O -0.52 -10.25 15.61 5.56 0.09 -10.16 16 17 C -0.05 -0.56 4.88 -29.03 -0.14 -0.70 16 18 C 0.30 4.33 6.59 -157.01 -1.03 3.30 16 19 N -0.51 -8.11 11.25 -11.80 -0.13 -8.24 16 20 C 0.44 6.21 8.99 -323.14 -2.91 3.31 16 21 N -0.45 -5.11 10.48 -13.82 -0.14 -5.26 16 22 C 0.21 1.14 11.27 -17.08 -0.19 0.94 16 23 C -0.23 -0.87 10.06 -39.79 -0.40 -1.27 16 24 C 0.18 1.24 11.32 -16.59 -0.19 1.05 16 25 N -0.33 -4.05 3.91 -13.84 -0.05 -4.11 16 26 N -0.32 -4.66 12.78 32.39 0.41 -4.24 16 27 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.08 0.59 8.07 -51.93 -0.42 0.17 16 29 H 0.07 0.39 6.44 -51.93 -0.33 0.06 16 30 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 31 H 0.08 1.35 7.42 -51.93 -0.39 0.97 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.38 10.88 7.67 -40.82 -0.31 10.57 16 37 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 38 H 0.12 1.00 7.40 -51.93 -0.38 0.62 16 39 H 0.13 1.01 8.11 -51.93 -0.42 0.59 16 40 H 0.19 0.17 8.06 -52.49 -0.42 -0.25 16 41 H 0.18 -0.10 8.06 -52.49 -0.42 -0.53 16 42 H 0.18 0.71 8.06 -52.49 -0.42 0.28 16 LS Contribution 364.47 15.07 5.49 5.49 Total: -1.00 -42.62 364.47 -9.88 -52.50 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.60 Total: 2.91 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: -4.78 Total: 9.93 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -0.05 Total: -78.80 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -42.62 -9.88 -52.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754413934.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.242 kcal (2) G-P(sol) polarization free energy of solvation -42.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds