Wall clock time and date at job start Tue Mar 31 2020 04:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99865 * 2 1 4 4 C 1.52996 * 109.47529 * 270.00535 * 3 2 1 5 5 C 1.52995 * 109.47215 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.47257 * 179.97438 * 5 4 3 7 7 C 1.36940 * 120.00118 * 179.97438 * 6 5 4 8 8 H 1.07997 * 120.00269 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00004 * 180.02562 * 7 6 5 10 10 N 1.31620 * 119.99803 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99984 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47239 * 60.00138 * 11 9 7 13 13 H 1.48503 * 109.47061 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47523 * 299.99772 * 11 9 7 15 15 C 1.34773 * 120.00166 * 180.02562 * 2 1 3 16 16 O 1.21274 * 120.00103 * 179.97438 * 15 2 1 17 17 C 1.50700 * 120.00034 * 0.02562 * 15 2 1 18 18 C 1.50703 * 109.47503 * 180.02562 * 17 15 2 19 19 N 1.32605 * 125.18616 * 90.01577 * 18 17 15 20 20 C 1.32824 * 109.75602 * 179.97438 * 19 18 17 21 21 N 1.33825 * 132.50775 * 180.28766 * 20 19 18 22 22 C 1.31353 * 120.86579 * 180.24635 * 21 20 19 23 23 C 1.40036 * 120.31119 * 359.44320 * 22 21 20 24 24 C 1.35784 * 119.24227 * 0.27058 * 23 22 21 25 25 N 1.35978 * 119.01691 * 0.02562 * 24 23 22 26 26 N 1.31185 * 125.18200 * 269.99908 * 18 17 15 27 27 H 1.09007 * 109.47232 * 269.99223 * 1 2 3 28 28 H 1.09001 * 109.47426 * 29.99738 * 1 2 3 29 29 H 1.09006 * 109.47142 * 149.99741 * 1 2 3 30 30 H 1.09001 * 109.47026 * 30.00674 * 3 2 1 31 31 H 1.08994 * 109.46852 * 149.99680 * 3 2 1 32 32 H 1.09001 * 109.47080 * 300.00106 * 4 3 2 33 33 H 1.08999 * 109.46882 * 59.99841 * 4 3 2 34 34 H 1.09001 * 109.47186 * 300.00045 * 5 4 3 35 35 H 1.09005 * 109.47156 * 59.99725 * 5 4 3 36 36 H 0.97005 * 120.00063 * 0.02562 * 6 5 4 37 37 H 0.97011 * 119.99737 * 180.02562 * 10 9 7 38 38 H 1.09000 * 109.47590 * 59.99762 * 17 15 2 39 39 H 1.09002 * 109.46962 * 299.99482 * 17 15 2 40 40 H 1.08002 * 119.84074 * 179.74397 * 22 21 20 41 41 H 1.08000 * 120.37922 * 180.30290 * 23 22 21 42 42 H 1.07999 * 120.48773 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7106 -1.4424 5 6 3.2168 3.0359 -1.4423 6 7 3.4614 3.4586 -2.8235 7 6 4.1337 4.6251 -3.0736 8 1 4.4840 5.2332 -2.2528 9 6 4.3650 5.0259 -4.3823 10 7 3.9377 4.2851 -5.3828 11 14 5.2815 6.6175 -4.7236 12 1 6.6388 6.5452 -4.1253 13 1 5.3977 6.8170 -6.1905 14 1 4.5372 7.7552 -4.1262 15 6 2.1389 -1.1672 -0.0005 16 8 3.3517 -1.1671 -0.0010 17 6 1.3855 -2.4723 -0.0017 18 6 2.3647 -3.6178 -0.0014 19 7 2.8602 -4.1993 1.0824 20 6 3.6921 -5.1726 0.7293 21 7 4.4244 -6.0385 1.4398 22 6 5.1893 -6.9235 0.8422 23 6 5.2420 -6.9829 -0.5559 24 6 4.4981 -6.1121 -1.2853 25 7 3.7211 -5.2040 -0.6366 26 7 2.8567 -4.1918 -1.0735 27 1 -0.3634 -0.0001 1.0277 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6084 2.0283 0.5139 31 1 3.1498 1.1384 0.5139 32 1 3.0415 0.9510 -1.9564 33 1 1.5000 1.8409 -1.9562 34 1 2.6273 3.7953 -0.9285 35 1 4.1693 2.9060 -0.9284 36 1 3.1465 2.9126 -3.5609 37 1 4.0997 4.5650 -6.2974 38 1 0.7591 -2.5295 -0.8919 39 1 0.7585 -2.5307 0.8881 40 1 5.7766 -7.6117 1.4320 41 1 5.8667 -7.7133 -1.0483 42 1 4.5231 -6.1404 -2.3646 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754413934.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:39:18 Heat of formation + Delta-G solvation = 90.970027 kcal Electronic energy + Delta-G solvation = -25227.394249 eV Core-core repulsion = 21437.745782 eV Total energy + Delta-G solvation = -3789.648467 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.155 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.01821 -41.11654 -39.77577 -37.58723 -36.44376 -35.66143 -34.28452 -33.43399 -31.85271 -31.76282 -30.31369 -27.92826 -26.80510 -25.70913 -25.04552 -24.45572 -22.79764 -22.25030 -20.27847 -19.50004 -19.18668 -19.13627 -18.42698 -17.60306 -17.36526 -16.99461 -16.68895 -16.48687 -15.96802 -15.55136 -15.34497 -15.23669 -14.68416 -14.53760 -14.34966 -14.07290 -13.77983 -13.74464 -13.56480 -13.44395 -13.24010 -13.10928 -13.02790 -12.75004 -12.70119 -12.45445 -12.11794 -11.85445 -11.82277 -11.40224 -11.13056 -11.04783 -10.96775 -10.65914 -9.93456 -9.72935 -9.06319 -7.98928 -5.29453 -0.52728 -0.35236 0.84295 1.26841 1.44258 1.48938 1.49249 1.55037 1.97613 2.24915 2.37988 2.53783 2.78788 3.33276 3.34074 3.47869 3.54231 3.83455 3.93159 4.02539 4.10296 4.21089 4.24159 4.34374 4.41538 4.50453 4.52271 4.58070 4.70506 4.76548 4.83697 4.88169 4.97842 5.03506 5.07136 5.25615 5.26830 5.35059 5.44499 5.50396 6.22908 6.30009 6.35789 6.75941 7.05198 7.28190 8.02962 8.27041 9.24846 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.016248 B = 0.002295 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.912251 B =12195.918513 C =13310.045093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.608 5.608 3 C 0.128 3.872 4 C -0.121 4.121 5 C 0.155 3.845 6 N -0.749 5.749 7 C -0.252 4.252 8 H 0.077 0.923 9 C -0.079 4.079 10 N -0.972 5.972 11 Si 0.981 3.019 12 H -0.279 1.279 13 H -0.292 1.292 14 H -0.272 1.272 15 C 0.514 3.486 16 O -0.587 6.587 17 C -0.043 4.043 18 C 0.283 3.717 19 N -0.559 5.559 20 C 0.419 3.581 21 N -0.496 5.496 22 C 0.214 3.786 23 C -0.189 4.189 24 C 0.141 3.859 25 N -0.334 5.334 26 N -0.353 5.353 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.061 0.939 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.010 0.990 36 H 0.372 0.628 37 H 0.253 0.747 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.241 0.759 41 H 0.233 0.767 42 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.843 -27.974 12.795 31.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.340 5.340 3 C 0.004 3.996 4 C -0.160 4.160 5 C 0.028 3.972 6 N -0.392 5.392 7 C -0.383 4.383 8 H 0.095 0.905 9 C -0.271 4.271 10 N -0.623 5.623 11 Si 0.808 3.192 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.198 1.198 15 C 0.301 3.699 16 O -0.467 6.467 17 C -0.084 4.084 18 C 0.001 3.999 19 N -0.292 5.292 20 C 0.059 3.941 21 N -0.212 5.212 22 C 0.031 3.969 23 C -0.212 4.212 24 C 0.006 3.994 25 N -0.113 5.113 26 N -0.185 5.185 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.131 0.869 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.028 0.972 36 H 0.203 0.797 37 H 0.061 0.939 38 H 0.171 0.829 39 H 0.176 0.824 40 H 0.257 0.743 41 H 0.249 0.751 42 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -5.712 -27.183 13.410 30.845 hybrid contribution 0.795 0.632 -1.603 1.898 sum -4.917 -26.551 11.807 29.471 Atomic orbital electron populations 1.22279 0.75941 1.05373 1.04219 1.47906 1.09072 1.04676 1.72343 1.21320 0.97761 0.85026 0.95457 1.21852 1.00241 0.95941 0.97923 1.20702 0.96337 0.94157 0.86037 1.42604 1.68301 1.25389 1.02912 1.19656 1.27598 0.98820 0.92259 0.90491 1.25689 1.03188 1.02849 0.95378 1.69835 1.53171 1.40928 0.98324 0.85112 0.78484 0.79185 0.76376 1.20528 1.21847 1.19821 1.20666 0.87420 0.86169 0.75601 1.90739 1.16569 1.87950 1.51442 1.20236 0.94543 0.83923 1.09731 1.24005 0.95294 0.95662 0.84924 1.70530 1.17320 1.11616 1.29759 1.22958 0.96132 0.95316 0.79671 1.68121 1.09916 1.06081 1.37121 1.24670 0.88045 0.90006 0.94202 1.22686 1.02090 1.01753 0.94703 1.23146 0.87812 0.85582 1.02891 1.48835 1.29772 1.23401 1.09298 1.78370 1.13208 1.05558 1.21391 0.89647 0.89649 0.88573 0.86902 0.92088 0.94911 0.90862 0.94492 0.97233 0.79654 0.93859 0.82896 0.82419 0.74261 0.75090 0.77323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.79 10.24 127.77 1.31 2.10 16 2 N -0.61 -14.62 2.87 -846.76 -2.43 -17.05 16 3 C 0.13 3.62 5.41 86.38 0.47 4.09 16 4 C -0.12 -4.33 5.65 30.59 0.17 -4.16 16 5 C 0.15 6.72 6.26 86.38 0.54 7.26 16 6 N -0.75 -41.38 5.60 -343.46 -1.92 -43.30 16 7 C -0.25 -14.93 9.99 84.03 0.84 -14.09 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.32 16 9 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 10 N -0.97 -62.09 13.06 21.65 0.28 -61.80 16 11 Si 0.98 47.74 29.55 68.60 2.03 49.77 16 12 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 13 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 14 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 15 C 0.51 15.32 7.67 87.66 0.67 15.99 16 16 O -0.59 -24.56 15.61 -3.01 -0.05 -24.61 16 17 C -0.04 -0.93 4.88 29.10 0.14 -0.79 16 18 C 0.28 8.65 6.59 138.69 0.91 9.56 16 19 N -0.56 -18.80 11.25 -191.25 -2.15 -20.95 16 20 C 0.42 12.31 8.99 261.60 2.35 14.66 16 21 N -0.50 -11.05 10.48 -197.64 -2.07 -13.12 16 22 C 0.21 1.77 11.27 85.20 0.96 2.73 16 23 C -0.19 -0.77 10.06 22.14 0.22 -0.55 16 24 C 0.14 1.81 11.32 83.48 0.94 2.75 16 25 N -0.33 -8.59 3.91 -197.70 -0.77 -9.37 16 26 N -0.35 -10.94 12.78 -51.45 -0.66 -11.60 16 27 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.08 1.02 8.07 -2.39 -0.02 1.01 16 29 H 0.10 0.76 6.44 -2.38 -0.02 0.75 16 30 H 0.11 2.46 8.07 -2.39 -0.02 2.44 16 31 H 0.06 2.04 7.42 -2.39 -0.02 2.02 16 32 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 36 H 0.37 21.80 7.67 -92.70 -0.71 21.09 16 37 H 0.25 15.53 8.31 -92.70 -0.77 14.76 16 38 H 0.15 2.30 7.40 -2.39 -0.02 2.29 16 39 H 0.16 2.33 8.11 -2.39 -0.02 2.31 16 40 H 0.24 -0.72 8.06 -2.91 -0.02 -0.74 16 41 H 0.23 -1.74 8.06 -2.91 -0.02 -1.77 16 42 H 0.21 1.29 8.06 -2.91 -0.02 1.26 16 Total: -1.00 -101.06 364.47 2.60 -98.46 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.34 Total: 18.30 kcal Atomic # 6 Polarization: 25.26 SS G_CDS: 10.00 Total: 35.26 kcal Atomic # 7 Polarization: -167.46 SS G_CDS: -9.73 Total: -177.19 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.05 Total: -24.61 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Total: -101.06 2.60 -98.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754413934.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.428 kcal (2) G-P(sol) polarization free energy of solvation -101.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds