Wall clock time and date at job start Tue Mar 31 2020 04:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38887 * 120.74846 * 2 1 4 4 C 1.38018 * 119.32951 * 180.02562 * 3 2 1 5 5 N 1.31971 * 120.86255 * 0.03000 * 4 3 2 6 6 C 1.32400 * 121.61533 * 359.97438 * 5 4 3 7 7 N 1.39005 * 119.70039 * 180.02562 * 6 5 4 8 8 C 1.46955 * 111.00067 * 359.97438 * 7 6 5 9 9 C 1.53055 * 109.36220 * 183.19218 * 8 7 6 10 10 N 1.46965 * 109.36354 * 301.59453 * 9 8 7 11 11 C 1.46889 * 110.99870 * 183.18786 * 10 9 8 12 12 C 1.50706 * 109.47109 * 170.00198 * 11 10 9 13 13 O 1.21281 * 119.99699 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00080 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99969 * 180.02562 * 14 12 11 16 16 C 1.50696 * 109.47148 * 179.72251 * 15 14 12 17 17 H 1.08002 * 120.00318 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99922 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99824 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99920 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46763 * 60.00502 * 20 18 16 22 22 H 1.48506 * 109.46865 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47267 * 300.00432 * 20 18 16 24 24 C 1.46959 * 110.87772 * 59.32159 * 10 9 8 25 25 C 1.46955 * 111.00077 * 123.79751 * 7 6 5 26 26 C 1.38297 * 120.74784 * 180.30594 * 2 1 3 27 27 H 1.08995 * 109.47488 * 89.99793 * 1 2 3 28 28 H 1.08999 * 109.46954 * 210.00146 * 1 2 3 29 29 H 1.09006 * 109.47271 * 329.99562 * 1 2 3 30 30 H 1.08004 * 120.33548 * 0.05325 * 3 2 1 31 31 H 1.08006 * 119.56773 * 180.02562 * 4 3 2 32 32 H 1.08990 * 109.49170 * 63.22324 * 8 7 6 33 33 H 1.08995 * 109.50433 * 303.16622 * 8 7 6 34 34 H 1.08995 * 109.48843 * 181.63413 * 9 8 7 35 35 H 1.08997 * 109.49354 * 61.56293 * 9 8 7 36 36 H 1.09004 * 109.47256 * 50.00565 * 11 10 9 37 37 H 1.08998 * 109.47820 * 290.00375 * 11 10 9 38 38 H 0.97005 * 120.00161 * 359.72088 * 14 12 11 39 39 H 1.09001 * 109.46512 * 299.72412 * 15 14 12 40 40 H 1.08998 * 109.47174 * 59.71534 * 15 14 12 41 41 H 0.97005 * 119.99648 * 179.97438 * 19 18 16 42 42 H 1.09007 * 109.48694 * 60.64644 * 24 10 9 43 43 H 1.09001 * 109.48949 * 180.71065 * 24 10 9 44 44 H 1.09002 * 109.49203 * 296.77818 * 25 7 6 45 45 H 1.09009 * 109.49103 * 56.82017 * 25 7 6 46 46 H 1.08000 * 120.45501 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2170 1.1936 0.0000 4 6 3.5968 1.1594 -0.0005 5 7 4.2455 0.0102 -0.0016 6 6 3.6048 -1.1485 -0.0018 7 7 4.3282 -2.3355 -0.0024 8 6 5.7738 -2.0713 -0.0035 9 6 6.5321 -3.3983 -0.0846 10 7 6.1553 -4.2453 1.0558 11 6 6.9197 -5.4996 1.0550 12 6 6.6925 -6.2272 2.3551 13 8 5.9658 -5.7475 3.1994 14 7 7.2977 -7.4102 2.5801 15 6 7.0764 -8.1177 3.8437 16 6 7.8557 -9.4074 3.8405 17 1 8.4555 -9.6738 2.9828 18 6 7.8030 -10.2475 4.9326 19 7 7.0722 -9.9234 5.9768 20 14 8.7685 -11.8467 4.9282 21 1 10.2155 -11.5508 4.7728 22 1 8.5452 -12.5631 6.2097 23 1 8.3130 -12.6969 3.7992 24 6 4.7097 -4.5094 1.0569 25 6 3.9510 -3.1827 1.1375 26 6 2.2140 -1.1885 -0.0063 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5139 30 1 1.6948 2.1390 0.0009 31 1 4.1528 2.0854 -0.0001 32 1 6.0490 -1.5506 0.9136 33 1 6.0301 -1.4528 -0.8636 34 1 7.6047 -3.2065 -0.0562 35 1 6.2776 -3.9064 -1.0147 36 1 7.9811 -5.2783 0.9433 37 1 6.5899 -6.1257 0.2260 38 1 7.8763 -7.7954 1.9035 39 1 7.4100 -7.4935 4.6727 40 1 6.0143 -8.3351 3.9573 41 1 7.0348 -10.5146 6.7449 42 1 4.4345 -5.0301 0.1396 43 1 4.4536 -5.1277 1.9173 44 1 4.2051 -2.6748 2.0679 45 1 2.8783 -3.3742 1.1091 46 1 1.6938 -2.1350 -0.0110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766166607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:33 Heat of formation + Delta-G solvation = 19.086968 kcal Electronic energy + Delta-G solvation = -25964.490224 eV Core-core repulsion = 22275.265017 eV Total energy + Delta-G solvation = -3689.225207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.95325 -39.42805 -38.19597 -35.54777 -34.12826 -33.97374 -32.33442 -31.15575 -30.80004 -28.65090 -28.12127 -26.92717 -24.68099 -24.17786 -22.70273 -22.33372 -21.56270 -19.84890 -19.64715 -17.44284 -17.14926 -16.74760 -16.14282 -15.75898 -15.62923 -15.38746 -15.10365 -14.84385 -14.54052 -14.40531 -14.21991 -14.08225 -13.89302 -13.52655 -13.08731 -12.89615 -12.83807 -12.63850 -12.30550 -12.03907 -11.92595 -11.85466 -11.56051 -11.30763 -11.08100 -11.02484 -10.96504 -10.79953 -10.31036 -10.08720 -9.71784 -9.66218 -9.41133 -9.00941 -8.72804 -8.30441 -8.20259 -7.85290 -6.16654 -4.23646 0.94250 1.04467 3.25012 3.25290 3.29845 3.31247 3.38837 3.64836 3.66482 4.21273 4.24722 4.41844 4.44181 4.65630 4.84823 4.85644 4.91380 5.03630 5.13247 5.18276 5.19251 5.20022 5.22828 5.31171 5.41015 5.46231 5.49245 5.51874 5.59704 5.61368 5.69423 5.79103 5.83697 5.98290 6.04662 6.10617 6.29901 6.53315 6.88996 7.05664 7.08686 7.32586 7.45420 7.52415 7.67547 7.82743 7.97376 8.63946 8.79015 9.12745 9.43087 10.93441 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.031175 B = 0.002085 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.945560 B =13424.874438 C =13959.513782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.022 4.022 3 C -0.209 4.209 4 C 0.129 3.871 5 N -0.525 5.525 6 C 0.321 3.679 7 N -0.481 5.481 8 C 0.073 3.927 9 C 0.053 3.947 10 N -0.521 5.521 11 C 0.036 3.964 12 C 0.499 3.501 13 O -0.540 6.540 14 N -0.715 5.715 15 C 0.252 3.748 16 C -0.544 4.544 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.052 3.948 25 C 0.067 3.933 26 C -0.189 4.189 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.131 0.869 31 H 0.154 0.846 32 H 0.060 0.940 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.390 0.610 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.266 0.734 42 H 0.038 0.962 43 H 0.110 0.890 44 H 0.058 0.942 45 H 0.085 0.915 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.032 19.911 -15.915 27.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.030 4.030 3 C -0.230 4.230 4 C -0.029 4.029 5 N -0.240 5.240 6 C 0.090 3.910 7 N -0.199 5.199 8 C -0.054 4.054 9 C -0.076 4.076 10 N -0.246 5.246 11 C -0.095 4.095 12 C 0.283 3.717 13 O -0.418 6.418 14 N -0.364 5.364 15 C 0.131 3.869 16 C -0.582 4.582 17 H 0.080 0.920 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.075 4.075 25 C -0.059 4.059 26 C -0.212 4.212 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.149 0.851 31 H 0.172 0.828 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.222 0.778 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.076 0.924 42 H 0.056 0.944 43 H 0.128 0.872 44 H 0.077 0.923 45 H 0.104 0.896 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.663 20.082 -15.064 26.557 hybrid contribution -0.054 -1.125 -0.465 1.218 sum -8.717 18.957 -15.529 26.009 Atomic orbital electron populations 1.20829 0.90233 1.03381 1.02870 1.20180 0.96616 0.92601 0.93634 1.21858 0.95525 0.98478 1.07152 1.22498 0.91706 0.95364 0.93307 1.67637 1.41063 0.97998 1.17253 1.19877 0.90210 0.88583 0.92372 1.59345 1.07325 1.11934 1.41259 1.22018 0.84134 0.96211 1.03020 1.22293 0.99962 0.93403 0.91905 1.61794 1.05241 1.15510 1.42063 1.22002 1.00035 0.90984 0.96483 1.20295 0.81253 0.81773 0.88399 1.90620 1.38020 1.66644 1.46527 1.46460 1.47878 1.20501 1.21545 1.19073 0.97155 0.90750 0.79908 1.21195 1.29828 1.04486 1.02729 0.91965 1.24958 0.95434 0.98518 0.95142 1.69966 1.38917 1.37594 1.05792 0.86473 0.80244 0.82740 0.77427 1.20067 1.21078 1.20084 1.22379 0.86681 0.95946 1.02533 1.22333 1.00058 0.93229 0.90253 1.21441 0.93165 0.99128 1.07450 0.90491 0.90927 0.91000 0.85110 0.82846 0.92126 0.89398 0.89697 0.94064 0.88204 0.92290 0.77810 0.95553 0.95638 0.92396 0.94407 0.87185 0.92325 0.89624 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 10.06 36.00 0.36 -0.31 16 2 C -0.02 -0.19 5.91 -104.36 -0.62 -0.81 16 3 C -0.21 -1.72 9.81 -39.42 -0.39 -2.11 16 4 C 0.13 1.22 11.17 -17.57 -0.20 1.02 16 5 N -0.52 -6.35 8.71 -12.44 -0.11 -6.46 16 6 C 0.32 3.91 6.40 -155.02 -0.99 2.92 16 7 N -0.48 -5.95 4.73 -173.04 -0.82 -6.77 16 8 C 0.07 0.88 4.79 -3.77 -0.02 0.86 16 9 C 0.05 0.61 5.61 -3.76 -0.02 0.59 16 10 N -0.52 -7.49 4.45 -235.91 -1.05 -8.54 16 11 C 0.04 0.51 5.45 -4.98 -0.03 0.49 16 12 C 0.50 9.75 7.53 -10.98 -0.08 9.66 16 13 O -0.54 -12.67 14.34 5.56 0.08 -12.59 16 14 N -0.71 -14.79 5.55 -61.47 -0.34 -15.13 16 15 C 0.25 6.63 5.43 -5.19 -0.03 6.61 16 16 C -0.54 -14.70 9.28 -34.44 -0.32 -15.01 16 17 H 0.06 1.56 7.60 -52.49 -0.40 1.17 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 19 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 20 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 C 0.05 0.74 5.26 -3.77 -0.02 0.72 16 25 C 0.07 0.85 5.37 -3.77 -0.02 0.83 16 26 C -0.19 -1.95 8.92 -39.22 -0.35 -2.30 16 27 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 29 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 30 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 31 H 0.15 1.03 8.06 -52.48 -0.42 0.60 16 32 H 0.06 0.83 8.05 -51.93 -0.42 0.41 16 33 H 0.09 1.01 7.82 -51.93 -0.41 0.60 16 34 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 35 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.10 1.21 8.03 -51.93 -0.42 0.80 16 37 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 38 H 0.39 6.86 8.32 -40.82 -0.34 6.52 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 43 H 0.11 1.86 5.85 -51.93 -0.30 1.56 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.09 0.93 6.80 -51.92 -0.35 0.58 16 46 H 0.13 1.23 7.19 -52.49 -0.38 0.85 16 LS Contribution 373.68 15.07 5.63 5.63 Total: -1.00 -33.18 373.68 -10.92 -44.10 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -7.21 Total: 4.50 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: -2.81 Total: 4.82 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -1.58 Total: -62.23 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.08 Total: -12.59 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.18 -10.92 -44.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766166607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.183 kcal (2) G-P(sol) polarization free energy of solvation -33.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds