Wall clock time and date at job start Tue Mar 31 2020 05:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09001 * 109.42931 * 2 1 4 4 C 1.53020 * 109.38546 * 119.87079 * 2 1 3 5 5 C 1.53369 * 109.75424 * 191.75498 * 4 2 1 6 6 C 1.50948 * 108.20518 * 309.33771 * 5 4 2 7 7 N 1.30133 * 128.28959 * 196.74978 * 6 5 4 8 8 N 1.40308 * 108.12177 * 179.86110 * 7 6 5 9 9 H 0.97004 * 126.00542 * 180.02562 * 8 7 6 10 10 C 1.35204 * 107.99756 * 0.03436 * 8 7 6 11 11 C 1.34511 * 107.63173 * 0.02562 * 10 8 7 12 12 C 1.50887 * 128.37225 * 179.81443 * 11 10 8 13 13 H 1.08993 * 109.72072 * 77.02572 * 12 11 10 14 14 C 1.50703 * 109.71783 * 316.41947 * 12 11 10 15 15 O 1.21278 * 120.00183 * 240.61401 * 14 12 11 16 16 N 1.34783 * 119.99755 * 60.60969 * 14 12 11 17 17 C 1.46499 * 119.99531 * 180.02562 * 16 14 12 18 18 H 1.08997 * 112.91343 * 23.75029 * 17 16 14 19 19 C 1.53781 * 113.61225 * 155.00207 * 17 16 14 20 20 C 1.53786 * 87.17350 * 139.93836 * 19 17 16 21 21 H 1.09000 * 113.61138 * 220.06261 * 20 19 17 22 22 N 1.46496 * 113.61518 * 89.15486 * 20 19 17 23 23 C 1.36940 * 119.99538 * 154.99700 * 22 20 19 24 24 H 1.07999 * 120.00330 * 0.02562 * 23 22 20 25 25 C 1.38814 * 119.99727 * 180.02562 * 23 22 20 26 26 N 1.31618 * 120.00032 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 120.00132 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.46947 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47288 * 119.99638 * 27 25 23 30 30 H 1.48499 * 109.46888 * 240.00026 * 27 25 23 31 31 C 1.53782 * 113.61191 * 252.49880 * 17 16 14 32 32 H 1.08996 * 109.47358 * 179.89739 * 1 2 3 33 33 H 1.09000 * 109.46758 * 299.90019 * 1 2 3 34 34 H 1.08999 * 109.46877 * 59.89838 * 1 2 3 35 35 H 1.09001 * 109.42697 * 311.84244 * 4 2 1 36 36 H 1.09003 * 109.42456 * 71.72395 * 4 2 1 37 37 H 1.08996 * 109.71439 * 69.01389 * 5 4 2 38 38 H 1.09000 * 109.71713 * 189.65993 * 5 4 2 39 39 H 1.08000 * 126.19165 * 180.02562 * 10 8 7 40 40 H 0.96997 * 119.99692 * 0.02562 * 16 14 12 41 41 H 1.09002 * 113.61445 * 254.52836 * 19 17 16 42 42 H 1.09002 * 113.61408 * 25.34566 * 19 17 16 43 43 H 0.97001 * 120.00117 * 335.00621 * 22 20 19 44 44 H 0.96996 * 120.00477 * 180.02562 * 26 25 23 45 45 H 1.08997 * 113.61668 * 334.56642 * 31 17 16 46 46 H 1.08998 * 113.61674 * 105.39151 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8927 1.0279 0.0000 4 6 2.0380 -0.7189 1.2517 5 6 3.5431 -0.4738 1.4154 6 6 4.2188 -0.7967 0.1048 7 7 5.4821 -1.0147 -0.1189 8 7 5.6439 -1.2781 -1.4875 9 1 6.4815 -1.4756 -1.9351 10 6 4.4272 -1.2081 -2.0730 11 6 3.5305 -0.9119 -1.1152 12 6 2.0403 -0.7204 -1.2541 13 1 1.5517 -1.6905 -1.3446 14 6 1.7464 0.1126 -2.4751 15 8 1.1739 1.1756 -2.3606 16 7 2.1198 -0.3237 -3.6945 17 6 1.8345 0.4863 -4.8813 18 1 1.7106 1.5449 -4.6528 19 6 2.7910 0.2174 -6.0551 20 6 1.5661 0.3260 -6.9786 21 1 1.5620 -0.4060 -7.7863 22 7 1.3008 1.6897 -7.4435 23 6 0.6211 1.8936 -8.6148 24 1 0.2804 1.0492 -9.1955 25 6 0.3701 3.1857 -9.0556 26 7 0.7858 4.2148 -8.3481 27 14 -0.5576 3.4641 -10.6529 28 1 -0.9120 2.1533 -11.2543 29 1 -1.7970 4.2343 -10.3777 30 1 0.2994 4.2257 -11.5967 31 6 0.7146 -0.0883 -5.7647 32 1 -0.3634 -1.0276 -0.0018 33 1 -0.3633 0.5123 0.8909 34 1 -0.3633 0.5154 -0.8891 35 1 1.5115 -0.3385 2.1270 36 1 1.8542 -1.7890 1.1548 37 1 3.7197 0.5705 1.6727 38 1 3.9373 -1.1184 2.2010 39 1 4.2138 -1.3621 -3.1205 40 1 2.5774 -1.1741 -3.7861 41 1 3.5257 1.0076 -6.2095 42 1 3.2367 -0.7772 -6.0361 43 1 1.6066 2.4481 -6.9218 44 1 0.6101 5.1177 -8.6558 45 1 0.5916 -1.1670 -5.6672 46 1 -0.2273 0.4542 -5.6837 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020406621.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:22 Heat of formation + Delta-G solvation = 59.325364 kcal Electronic energy + Delta-G solvation = -26940.274702 eV Core-core repulsion = 23252.794363 eV Total energy + Delta-G solvation = -3687.480339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.90638 -39.84845 -38.31019 -36.74296 -34.10611 -33.04923 -32.50190 -31.14867 -29.82863 -29.63903 -26.91753 -25.12932 -24.60484 -24.07920 -22.97138 -21.49789 -21.02388 -20.43065 -19.11205 -18.65989 -18.02945 -17.35554 -16.87620 -15.95342 -15.37174 -15.15296 -14.90737 -14.80795 -14.35171 -14.18773 -13.97518 -13.66679 -13.35543 -13.04616 -12.99023 -12.65412 -12.55934 -12.21518 -12.04531 -11.90770 -11.72689 -11.63718 -11.28225 -11.05842 -10.90011 -10.81489 -10.74363 -10.64596 -10.26218 -10.14206 -9.88722 -9.73105 -9.64343 -9.52383 -8.93229 -8.68918 -8.64551 -7.01667 -5.80325 -3.10513 1.62372 2.37498 2.56183 2.87398 3.38087 3.41971 3.47275 3.49922 4.14713 4.42586 4.54976 4.55483 4.66495 4.73264 5.01276 5.04890 5.14544 5.20983 5.22784 5.28018 5.32266 5.37579 5.46758 5.50045 5.55578 5.68613 5.74033 5.78888 5.84502 5.85910 5.97028 6.01621 6.05386 6.19656 6.30288 6.30872 6.37020 6.40363 6.61514 6.71381 6.78849 7.00213 7.03016 7.40480 7.66789 7.69452 8.37701 8.41467 9.48609 10.04887 10.38686 11.41854 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.021829 B = 0.002787 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.418398 B =10043.305184 C =10737.801349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.070 4.070 3 H 0.083 0.917 4 C -0.111 4.111 5 C -0.041 4.041 6 C 0.092 3.908 7 N -0.288 5.288 8 N -0.481 5.481 9 H 0.441 0.559 10 C 0.069 3.931 11 C -0.230 4.230 12 C -0.023 4.023 13 H 0.100 0.900 14 C 0.519 3.481 15 O -0.529 6.529 16 N -0.720 5.720 17 C 0.126 3.874 18 H 0.113 0.887 19 C -0.166 4.166 20 C 0.172 3.828 21 H 0.068 0.932 22 N -0.705 5.705 23 C -0.245 4.245 24 H 0.073 0.927 25 C -0.011 4.011 26 N -0.929 5.929 27 Si 0.909 3.091 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 C -0.184 4.184 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.174 0.826 40 H 0.390 0.610 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.386 0.614 44 H 0.256 0.744 45 H 0.068 0.932 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.841 -15.574 18.692 25.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.089 4.089 3 H 0.101 0.899 4 C -0.149 4.149 5 C -0.080 4.080 6 C -0.077 4.077 7 N -0.111 5.111 8 N -0.189 5.189 9 H 0.285 0.715 10 C -0.077 4.077 11 C -0.242 4.242 12 C -0.045 4.045 13 H 0.118 0.882 14 C 0.305 3.695 15 O -0.404 6.404 16 N -0.372 5.372 17 C 0.022 3.978 18 H 0.131 0.869 19 C -0.206 4.206 20 C 0.059 3.941 21 H 0.086 0.914 22 N -0.344 5.344 23 C -0.376 4.376 24 H 0.091 0.909 25 C -0.208 4.208 26 N -0.577 5.577 27 Si 0.739 3.261 28 H -0.205 1.205 29 H -0.218 1.218 30 H -0.218 1.218 31 C -0.227 4.227 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.191 0.809 40 H 0.225 0.775 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.220 0.780 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 7.487 -14.834 19.076 25.298 hybrid contribution -0.419 -0.075 -1.531 1.589 sum 7.068 -14.909 17.544 24.084 Atomic orbital electron populations 1.21903 0.94278 1.01468 1.03149 1.20954 0.96238 1.00049 0.91664 0.89867 1.21667 0.93890 1.01162 0.98137 1.20182 0.94294 1.02539 0.90997 1.22353 0.90427 0.98342 0.96597 1.77016 1.18097 1.23115 0.92828 1.46300 1.08559 1.57812 1.06231 0.71525 1.22115 0.85649 1.00886 0.99093 1.19682 0.95585 1.15883 0.93084 1.19815 0.91120 0.99559 0.94042 0.88182 1.20487 0.78225 0.86487 0.84318 1.90709 1.40901 1.22716 1.86103 1.46272 1.60512 1.23603 1.06766 1.22614 0.96925 0.96707 0.81547 0.86869 1.23904 0.98781 1.01229 0.96671 1.20934 0.91553 0.89220 0.92409 0.91429 1.42204 1.66320 1.00470 1.25393 1.19307 1.28158 0.92071 0.98077 0.90888 1.24788 1.01400 0.95516 0.99071 1.69674 1.51020 0.97786 1.39210 0.86100 0.79226 0.77676 0.83052 1.20487 1.21777 1.21829 1.24346 0.99443 0.99518 0.99356 0.93182 0.92584 0.90855 0.90480 0.91424 0.89592 0.89869 0.80860 0.77504 0.90950 0.90561 0.77966 0.93400 0.91342 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.95 37.16 0.33 -1.20 16 2 C -0.07 -0.71 1.77 -90.41 -0.16 -0.87 16 3 H 0.08 1.03 7.76 -51.93 -0.40 0.62 16 4 C -0.11 -0.83 5.17 -26.53 -0.14 -0.97 16 5 C -0.04 -0.34 6.31 -27.57 -0.17 -0.51 16 6 C 0.09 0.99 7.10 -82.32 -0.58 0.41 16 7 N -0.29 -3.32 12.68 33.76 0.43 -2.89 16 8 N -0.48 -4.33 7.37 30.34 0.22 -4.10 16 9 H 0.44 2.58 8.96 -182.44 -1.64 0.94 16 10 C 0.07 0.62 11.00 -17.38 -0.19 0.43 16 11 C -0.23 -2.40 5.42 -104.98 -0.57 -2.97 16 12 C -0.02 -0.24 2.32 -92.64 -0.22 -0.46 16 13 H 0.10 0.88 8.13 -51.93 -0.42 0.46 16 14 C 0.52 7.19 6.83 -10.98 -0.07 7.12 16 15 O -0.53 -9.62 13.88 5.56 0.08 -9.54 16 16 N -0.72 -8.90 4.76 -53.02 -0.25 -9.15 16 17 C 0.13 2.00 4.12 -67.12 -0.28 1.72 16 18 H 0.11 2.23 7.47 -51.93 -0.39 1.84 16 19 C -0.17 -2.49 7.57 -25.92 -0.20 -2.69 16 20 C 0.17 3.27 4.57 -67.02 -0.31 2.96 16 21 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 22 N -0.71 -17.47 5.31 -52.54 -0.28 -17.75 16 23 C -0.25 -6.74 9.97 -15.06 -0.15 -6.89 16 24 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 25 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 26 N -0.93 -28.14 13.06 55.49 0.72 -27.41 16 27 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 30 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 31 C -0.18 -3.13 7.68 -25.82 -0.20 -3.33 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.96 6.38 -51.93 -0.33 0.63 16 35 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 36 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.17 1.14 5.97 -52.49 -0.31 0.83 16 40 H 0.39 3.51 6.47 -40.82 -0.26 3.25 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 43 H 0.39 10.28 7.90 -40.82 -0.32 9.95 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 366.81 15.07 5.53 5.53 Total: -1.00 -34.23 366.81 -9.84 -44.06 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -8.27 Total: 11.67 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -3.00 Total: -7.68 kcal Atomic # 7 Polarization: -62.15 SS G_CDS: 0.85 Total: -61.30 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.08 Total: -9.54 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.23 -9.84 -44.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020406621.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.390 kcal (2) G-P(sol) polarization free energy of solvation -34.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds