Wall clock time and date at job start Tue Mar 31 2020 05:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 109.53921 * 2 1 4 4 C 1.53130 * 109.50766 * 120.11232 * 2 1 3 5 5 C 1.53252 * 109.52421 * 189.73174 * 4 2 1 6 6 N 1.46580 * 108.78589 * 309.42317 * 5 4 2 7 7 C 1.34864 * 127.50012 * 197.53824 * 6 5 4 8 8 C 1.36576 * 106.78567 * 180.02562 * 7 6 5 9 9 C 1.47320 * 126.20751 * 179.87885 * 8 7 6 10 10 O 1.21625 * 120.00494 * 359.71175 * 9 8 7 11 11 N 1.34781 * 119.99797 * 179.71461 * 9 8 7 12 12 C 1.46500 * 119.99985 * 179.97438 * 11 9 8 13 13 H 1.09002 * 112.85221 * 334.67013 * 12 11 9 14 14 C 1.53785 * 113.68813 * 105.94035 * 12 11 9 15 15 C 1.53777 * 87.08241 * 89.12417 * 14 12 11 16 16 H 1.08998 * 113.68990 * 139.98657 * 15 14 12 17 17 N 1.46497 * 113.61724 * 270.88663 * 15 14 12 18 18 C 1.36936 * 119.99610 * 252.49615 * 17 15 14 19 19 H 1.08005 * 120.00159 * 0.02562 * 18 17 15 20 20 C 1.38816 * 119.99973 * 179.97438 * 18 17 15 21 21 N 1.31615 * 119.99995 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99867 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.46923 * 89.99861 * 22 20 18 24 24 H 1.48498 * 109.47390 * 209.99648 * 22 20 18 25 25 H 1.48494 * 109.47212 * 329.99745 * 22 20 18 26 26 C 1.53781 * 113.61339 * 203.47543 * 12 11 9 27 27 N 1.35885 * 107.57844 * 359.61700 * 8 7 6 28 28 C 1.29794 * 108.85157 * 0.28448 * 27 8 7 29 29 C 1.51096 * 127.17733 * 179.90825 * 28 27 8 30 30 H 1.09001 * 109.46921 * 180.11259 * 1 2 3 31 31 H 1.08996 * 109.46656 * 300.10721 * 1 2 3 32 32 H 1.08990 * 109.47250 * 60.11036 * 1 2 3 33 33 H 1.08993 * 109.46505 * 309.74906 * 4 2 1 34 34 H 1.09004 * 109.46078 * 69.73088 * 4 2 1 35 35 H 1.08997 * 109.57907 * 69.21445 * 5 4 2 36 36 H 1.08997 * 109.58062 * 189.63343 * 5 4 2 37 37 H 1.08003 * 126.60849 * 359.90468 * 7 6 5 38 38 H 0.96998 * 119.99866 * 0.02562 * 11 9 8 39 39 H 1.08999 * 113.61060 * 203.67840 * 14 12 11 40 40 H 1.08997 * 113.61198 * 334.57634 * 14 12 11 41 41 H 0.96998 * 120.00595 * 72.49863 * 17 15 14 42 42 H 0.97004 * 120.00231 * 179.97438 * 21 20 18 43 43 H 1.09000 * 113.61578 * 25.34726 * 26 12 11 44 44 H 1.09001 * 113.61682 * 156.17306 * 26 12 11 45 45 H 1.08994 * 109.71962 * 315.64014 * 29 28 27 46 46 H 1.09000 * 109.71913 * 76.29046 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0414 -0.7241 1.2486 5 6 3.5544 -0.5166 1.3775 6 7 4.1874 -0.8519 0.0986 7 6 5.4896 -1.1200 -0.1275 8 6 5.6136 -1.3753 -1.4634 9 6 6.8593 -1.7154 -2.1725 10 8 7.9081 -1.7847 -1.5604 11 7 6.8369 -1.9497 -3.4996 12 6 8.0758 -2.2874 -4.2049 13 1 8.9655 -1.9063 -3.7036 14 6 8.1780 -3.7704 -4.5987 15 6 7.4723 -3.3895 -5.9108 16 1 7.8738 -3.8976 -6.7875 17 7 6.0110 -3.4585 -5.8327 18 6 5.3383 -4.4677 -6.4683 19 1 5.8851 -5.2131 -7.0269 20 6 3.9537 -4.5335 -6.3939 21 7 3.3072 -5.5032 -7.0053 22 14 3.0081 -3.2448 -5.4273 23 1 2.6582 -2.1126 -6.3224 24 1 1.7651 -3.8477 -4.8828 25 1 3.8493 -2.7494 -4.3083 26 6 8.0337 -1.9719 -5.7094 27 7 4.3784 -1.2644 -2.0188 28 6 3.5275 -0.9517 -1.0899 29 6 2.0423 -0.7250 -1.2509 30 1 -0.3633 -1.0277 0.0020 31 1 -0.3632 0.5155 0.8890 32 1 -0.3633 0.5121 -0.8909 33 1 1.5433 -0.3225 2.1310 34 1 1.8271 -1.7895 1.1639 35 1 3.7604 0.5246 1.6254 36 1 3.9467 -1.1655 2.1605 37 1 6.2822 -1.1291 0.6062 38 1 6.0006 -1.8940 -3.9878 39 1 9.2025 -4.1155 -4.7381 40 1 7.5901 -4.4324 -3.9630 41 1 5.5199 -2.7893 -5.3307 42 1 2.3396 -5.5494 -6.9530 43 1 7.3292 -1.1822 -5.9704 44 1 9.0186 -1.8240 -6.1523 45 1 1.8573 -0.1120 -2.1329 46 1 1.5332 -1.6832 -1.3549 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022281921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:07 Heat of formation + Delta-G solvation = 55.324390 kcal Electronic energy + Delta-G solvation = -27271.025211 eV Core-core repulsion = 23583.371377 eV Total energy + Delta-G solvation = -3687.653834 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.48384 -39.70052 -37.96685 -37.24411 -34.12487 -33.55856 -32.46621 -30.61973 -30.31327 -29.69812 -26.99780 -25.11389 -24.90865 -24.12603 -23.21443 -21.65524 -21.46687 -19.84990 -19.38800 -19.04376 -17.64302 -17.37249 -16.37437 -16.14509 -15.61090 -15.12462 -14.91887 -14.65616 -14.57750 -14.10603 -14.02751 -13.95243 -13.72427 -13.62264 -13.22496 -12.71118 -12.60059 -12.57175 -12.13302 -12.06208 -11.89276 -11.75737 -11.46252 -11.25139 -11.20390 -10.85275 -10.83550 -10.27842 -10.16740 -9.96567 -9.79050 -9.76856 -9.61248 -9.48860 -8.83768 -8.63527 -8.35266 -7.24262 -5.72446 -3.09603 1.63582 2.43487 2.46367 3.46697 3.51608 3.54927 3.64167 3.77647 3.92542 4.09195 4.17821 4.23418 4.64387 4.68049 4.71964 4.83828 4.91526 5.00689 5.12588 5.17254 5.18125 5.24657 5.30750 5.34377 5.37449 5.43815 5.51058 5.53530 5.67865 5.72063 5.81596 5.87192 5.88555 6.02585 6.13737 6.25299 6.30004 6.47284 6.58300 6.71990 6.83905 6.92278 7.11820 7.76043 8.01627 8.07424 8.45676 8.59912 9.23197 9.96001 10.13686 11.44689 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.011649 B = 0.004796 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.142193 B = 5836.571591 C = 7859.795741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.096 4.096 3 H 0.079 0.921 4 C -0.132 4.132 5 C 0.103 3.897 6 N -0.456 5.456 7 C 0.033 3.967 8 C -0.061 4.061 9 C 0.606 3.394 10 O -0.556 6.556 11 N -0.690 5.690 12 C 0.120 3.880 13 H 0.093 0.907 14 C -0.185 4.185 15 C 0.170 3.830 16 H 0.074 0.926 17 N -0.728 5.728 18 C -0.247 4.247 19 H 0.092 0.908 20 C 0.006 3.994 21 N -0.933 5.933 22 Si 0.870 3.130 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.250 1.250 26 C -0.169 4.169 27 N -0.447 5.447 28 C 0.210 3.790 29 C -0.033 4.033 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.188 0.812 38 H 0.409 0.591 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.358 0.642 42 H 0.259 0.741 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.823 14.150 18.690 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.115 4.115 3 H 0.097 0.903 4 C -0.169 4.169 5 C -0.019 4.019 6 N -0.138 5.138 7 C -0.106 4.106 8 C -0.190 4.190 9 C 0.393 3.607 10 O -0.435 6.435 11 N -0.342 5.342 12 C 0.015 3.985 13 H 0.112 0.888 14 C -0.227 4.227 15 C 0.058 3.942 16 H 0.092 0.908 17 N -0.370 5.370 18 C -0.377 4.377 19 H 0.110 0.890 20 C -0.190 4.190 21 N -0.580 5.580 22 Si 0.699 3.301 23 H -0.213 1.213 24 H -0.220 1.220 25 H -0.175 1.175 26 C -0.208 4.208 27 N -0.166 5.166 28 C -0.054 4.054 29 C -0.072 4.072 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.111 0.889 37 H 0.205 0.795 38 H 0.248 0.752 39 H 0.100 0.900 40 H 0.090 0.910 41 H 0.193 0.807 42 H 0.068 0.932 43 H 0.088 0.912 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.398 13.796 18.231 22.905 hybrid contribution -0.977 0.840 1.359 1.872 sum -2.376 14.636 19.589 24.568 Atomic orbital electron populations 1.21803 0.93562 1.02598 1.02387 1.21264 0.96894 0.99766 0.93593 0.90305 1.22000 0.92840 1.02626 0.99477 1.22069 0.94116 1.02308 0.83435 1.45346 1.07385 1.51568 1.09546 1.22354 0.86136 1.04014 0.98070 1.20652 0.92896 1.13645 0.91805 1.16857 0.86049 0.76019 0.81819 1.90739 1.31183 1.54313 1.67229 1.45696 1.11720 1.68889 1.07865 1.21848 0.87063 0.97216 0.92353 0.88850 1.24260 1.01064 0.95712 1.01663 1.21139 0.84560 0.92962 0.95509 0.90760 1.42616 1.00549 1.32232 1.61588 1.19090 0.89904 1.03773 1.24930 0.89012 1.24682 0.96213 0.98066 1.00005 1.69713 1.07505 1.33334 1.47476 0.86726 0.80474 0.81733 0.81189 1.21305 1.22015 1.17485 1.23887 1.02080 1.00238 0.94621 1.70524 0.99153 1.16588 1.30340 1.23502 0.96598 1.04882 0.80427 1.20359 0.85038 1.02566 0.99216 0.92069 0.92183 0.91860 0.89063 0.90323 0.89451 0.88856 0.79533 0.75226 0.90044 0.90978 0.80681 0.93154 0.91199 0.88707 0.88371 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.17 37.16 0.34 -0.49 16 2 C -0.10 -0.66 2.74 -90.35 -0.25 -0.91 16 3 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 4 C -0.13 -0.75 5.24 -26.53 -0.14 -0.89 16 5 C 0.10 0.68 6.96 -3.87 -0.03 0.65 16 6 N -0.46 -5.29 3.11 -113.42 -0.35 -5.64 16 7 C 0.03 0.46 11.32 -16.82 -0.19 0.27 16 8 C -0.06 -1.07 6.98 -82.98 -0.58 -1.65 16 9 C 0.61 11.74 7.81 -12.56 -0.10 11.65 16 10 O -0.56 -11.39 16.50 5.26 0.09 -11.31 16 11 N -0.69 -13.34 5.12 -54.12 -0.28 -13.62 16 12 C 0.12 2.12 4.30 -67.12 -0.29 1.84 16 13 H 0.09 1.58 7.50 -51.93 -0.39 1.19 16 14 C -0.19 -3.41 7.68 -25.92 -0.20 -3.61 16 15 C 0.17 3.39 4.56 -67.12 -0.31 3.08 16 16 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 17 N -0.73 -17.67 4.99 -52.63 -0.26 -17.93 16 18 C -0.25 -7.12 10.45 -15.06 -0.16 -7.28 16 19 H 0.09 2.81 8.06 -52.48 -0.42 2.38 16 20 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 21 N -0.93 -29.78 13.97 55.49 0.78 -29.01 16 22 Si 0.87 22.34 27.74 -169.99 -4.71 17.63 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 25 H -0.25 -6.10 6.30 56.52 0.36 -5.75 16 26 C -0.17 -2.76 7.58 -25.91 -0.20 -2.96 16 27 N -0.45 -8.08 11.00 -7.01 -0.08 -8.16 16 28 C 0.21 2.97 7.64 -154.63 -1.18 1.79 16 29 C -0.03 -0.35 5.64 -27.49 -0.16 -0.51 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.31 8.12 -51.93 -0.42 -0.11 16 34 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 35 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.19 2.08 8.06 -52.48 -0.42 1.66 16 38 H 0.41 8.43 5.66 -40.82 -0.23 8.20 16 39 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 41 H 0.36 8.58 3.22 -40.82 -0.13 8.45 16 42 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.09 1.01 8.11 -51.93 -0.42 0.59 16 LS Contribution 369.29 15.07 5.57 5.57 Total: -1.00 -36.35 369.29 -9.89 -46.25 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -7.11 Total: 15.17 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -3.52 Total: 1.07 kcal Atomic # 7 Polarization: -74.17 SS G_CDS: -0.19 Total: -74.37 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.63 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.35 -9.89 -46.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022281921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.570 kcal (2) G-P(sol) polarization free energy of solvation -36.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds