Wall clock time and date at job start Tue Mar 31 2020 04:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35321 * 126.12900 * 2 1 4 4 C 1.39872 * 107.91904 * 180.26149 * 3 2 1 5 5 N 1.30840 * 108.20251 * 359.73871 * 4 3 2 6 6 N 1.34946 * 126.12492 * 179.80728 * 2 1 3 7 7 C 1.46504 * 126.04036 * 0.02562 * 6 2 1 8 8 C 1.50702 * 109.46821 * 269.71573 * 7 6 2 9 9 O 1.21285 * 120.00037 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99910 * 180.02562 * 8 7 6 11 11 C 1.49625 * 126.06979 * 359.96612 * 10 8 7 12 12 C 1.51522 * 102.49370 * 154.35788 * 11 10 8 13 13 H 1.09005 * 111.12983 * 287.41066 * 12 11 10 14 14 C 1.51561 * 123.33529 * 151.63104 * 12 11 10 15 15 C 1.56336 * 101.81392 * 207.98766 * 14 12 11 16 16 C 1.56001 * 105.77089 * 25.43782 * 15 14 12 17 17 H 1.09000 * 110.52447 * 248.19667 * 16 15 14 18 18 N 1.46498 * 110.52878 * 125.58267 * 16 15 14 19 19 C 1.36943 * 119.99752 * 86.17757 * 18 16 15 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 16 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 16 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47213 * 60.00246 * 23 21 19 25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47081 * 299.99875 * 23 21 19 27 27 C 1.49702 * 103.98645 * 6.95732 * 16 15 14 28 28 H 1.09001 * 108.54060 * 77.96653 * 27 16 15 29 29 C 1.49279 * 126.07388 * 179.97438 * 10 8 7 30 30 H 1.08998 * 109.46966 * 270.18929 * 1 2 3 31 31 H 1.08996 * 109.46987 * 30.18482 * 1 2 3 32 32 H 1.08997 * 109.47249 * 150.18922 * 1 2 3 33 33 H 1.08002 * 126.03845 * 359.97438 * 3 2 1 34 34 H 1.07994 * 125.89536 * 179.71032 * 4 3 2 35 35 H 1.08995 * 109.46888 * 149.71266 * 7 6 2 36 36 H 1.08995 * 109.46754 * 29.70939 * 7 6 2 37 37 H 1.09005 * 110.80386 * 36.11044 * 11 10 8 38 38 H 1.08998 * 110.97173 * 272.68689 * 11 10 8 39 39 H 1.09003 * 110.96315 * 89.85528 * 14 12 11 40 40 H 1.09000 * 110.96494 * 326.11749 * 14 12 11 41 41 H 1.09007 * 110.19098 * 266.36091 * 15 14 12 42 42 H 1.08995 * 110.25592 * 144.54932 * 15 14 12 43 43 H 0.97001 * 120.00384 * 266.46113 * 18 16 15 44 44 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 45 45 H 1.09003 * 110.39266 * 292.40345 * 29 10 8 46 46 H 1.08998 * 110.39866 * 54.69172 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6559 -0.0061 5 7 3.6334 -0.6525 -0.0039 6 7 2.3026 -1.0900 0.0037 7 6 1.8539 -2.4846 0.0078 8 6 1.7062 -2.9605 1.4301 9 8 1.9521 -2.2089 2.3497 10 7 1.3020 -4.2217 1.6802 11 6 0.9644 -5.2582 0.6552 12 6 1.2242 -6.5521 1.3997 13 1 2.2929 -6.7228 1.5298 14 6 0.4970 -7.8471 1.0978 15 6 0.5401 -8.5691 2.4838 16 6 0.6645 -7.4357 3.5485 17 1 1.6421 -7.4689 4.0295 18 7 -0.4018 -7.5492 4.5466 19 6 -0.2361 -8.3622 5.6360 20 1 0.6824 -8.9163 5.7616 21 6 -1.2488 -8.4742 6.5788 22 7 -2.3683 -7.7994 6.4254 23 14 -1.0226 -9.5827 8.0652 24 1 0.1504 -9.1232 8.8515 25 1 -2.2401 -9.5277 8.9137 26 1 -0.7984 -10.9790 7.6119 27 6 0.5092 -6.1756 2.7554 28 1 -0.5494 -6.0297 2.5403 29 6 1.1113 -4.8325 3.0289 30 1 -0.3633 0.0034 1.0276 31 1 -0.3633 0.8883 -0.5167 32 1 -0.3633 -0.8916 -0.5109 33 1 1.9741 2.1211 -0.0004 34 1 4.5083 1.2891 -0.0120 35 1 2.5875 -3.1038 -0.5083 36 1 0.8931 -2.5586 -0.5016 37 1 1.6190 -5.1725 -0.2122 38 1 -0.0816 -5.1862 0.3574 39 1 1.0273 -8.4247 0.3406 40 1 -0.5308 -7.6547 0.7902 41 1 1.4045 -9.2312 2.5364 42 1 -0.3773 -9.1356 2.6429 43 1 -1.2268 -7.0516 4.4338 44 1 -3.0758 -7.8773 7.0844 45 1 2.0703 -4.9421 3.5352 46 1 0.4332 -4.2252 3.6285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026364240.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:24 Heat of formation + Delta-G solvation = 78.310152 kcal Electronic energy + Delta-G solvation = -26652.755372 eV Core-core repulsion = 22966.098276 eV Total energy + Delta-G solvation = -3686.657097 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.46665 -40.54955 -38.67913 -35.42509 -33.69565 -33.42680 -32.25250 -30.98641 -30.01516 -28.55816 -27.37686 -27.09311 -25.45326 -23.42341 -22.94626 -21.35912 -20.56155 -20.18789 -19.23557 -19.12477 -17.38779 -17.11200 -16.93676 -16.30567 -15.68439 -15.20118 -14.89764 -14.53950 -14.35902 -14.06593 -13.97831 -13.81884 -13.68329 -13.13220 -13.07324 -12.92998 -12.71690 -12.51605 -12.37245 -12.25192 -11.93125 -11.62293 -11.47044 -11.12459 -10.85379 -10.80554 -10.74971 -10.54354 -10.24364 -10.21322 -10.17429 -9.83948 -9.64548 -9.33622 -8.94482 -8.76978 -8.62727 -7.01919 -5.81275 -3.10695 1.63529 2.16229 2.42071 2.74191 2.84124 3.41589 3.46520 3.47057 3.98037 4.24066 4.27231 4.43108 4.54186 4.64479 4.79330 4.82094 4.94360 4.95555 5.16250 5.20242 5.24286 5.31284 5.49639 5.50954 5.51998 5.55291 5.59832 5.63933 5.79917 5.83694 5.88952 5.95703 5.99129 6.05786 6.09409 6.27545 6.28323 6.43144 6.51700 6.56182 6.73167 6.79695 7.00305 7.34052 7.57916 7.66485 7.96827 8.37015 9.48375 10.04136 10.38589 11.41098 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.021303 B = 0.002626 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.078466 B =10661.557995 C =11270.141089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.095 3.905 3 C -0.276 4.276 4 C 0.049 3.951 5 N -0.290 5.290 6 N -0.357 5.357 7 C 0.119 3.881 8 C 0.510 3.490 9 O -0.523 6.523 10 N -0.622 5.622 11 C 0.112 3.888 12 C -0.126 4.126 13 H 0.088 0.912 14 C -0.100 4.100 15 C -0.144 4.144 16 C 0.199 3.801 17 H 0.054 0.946 18 N -0.720 5.720 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.118 4.118 28 H 0.076 0.924 29 C 0.135 3.865 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.147 0.853 34 H 0.183 0.817 35 H 0.123 0.877 36 H 0.120 0.880 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.384 0.616 44 H 0.256 0.744 45 H 0.070 0.930 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.079 11.334 -19.497 23.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.032 4.032 3 C -0.305 4.305 4 C -0.137 4.137 5 N -0.110 5.110 6 N -0.139 5.139 7 C -0.007 4.007 8 C 0.296 3.704 9 O -0.398 6.398 10 N -0.358 5.358 11 C -0.010 4.010 12 C -0.146 4.146 13 H 0.106 0.894 14 C -0.138 4.138 15 C -0.185 4.185 16 C 0.088 3.912 17 H 0.072 0.928 18 N -0.361 5.361 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.138 4.138 28 H 0.095 0.905 29 C 0.014 3.986 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.164 0.836 34 H 0.200 0.800 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.218 0.782 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.950 10.552 -18.841 22.686 hybrid contribution -0.696 0.176 0.866 1.125 sum 6.254 10.728 -17.975 21.848 Atomic orbital electron populations 1.20486 0.87436 1.03583 1.03782 1.21085 0.94657 0.87246 1.00234 1.21189 0.92332 0.98802 1.18209 1.23816 0.98148 0.92138 0.99622 1.77374 0.96121 1.13239 1.24270 1.47942 1.04177 1.04406 1.57391 1.21403 1.03106 0.80244 0.95917 1.20361 0.77895 0.80975 0.91183 1.90787 1.49314 1.53738 1.45948 1.49869 1.66474 1.10695 1.08787 1.21874 1.00863 0.87448 0.90783 1.22560 1.01064 0.93903 0.97076 0.89372 1.21862 0.99535 0.94179 0.98214 1.23799 1.02187 0.99235 0.93236 1.19940 0.93546 0.89035 0.88710 0.92822 1.42489 1.16258 1.54254 1.23064 1.19188 1.00304 1.18964 0.98827 0.91178 1.24745 0.96410 1.00455 0.99168 1.69647 1.06262 1.45201 1.36957 0.86278 0.76812 0.80379 0.82775 1.21229 1.21702 1.21250 1.22049 1.00606 0.94296 0.96816 0.90546 1.21014 1.01287 0.93449 0.82841 0.89833 0.89474 0.91348 0.83572 0.80026 0.85932 0.86237 0.90571 0.90472 0.92103 0.91485 0.92649 0.90640 0.78179 0.93415 0.91204 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 10.12 36.01 0.36 -0.37 16 2 C 0.09 1.06 6.93 -82.26 -0.57 0.49 16 3 C -0.28 -2.98 10.72 -40.01 -0.43 -3.41 16 4 C 0.05 0.57 12.03 -17.36 -0.21 0.36 16 5 N -0.29 -4.08 12.58 30.62 0.39 -3.69 16 6 N -0.36 -4.50 3.10 -58.31 -0.18 -4.68 16 7 C 0.12 1.20 5.78 -5.19 -0.03 1.17 16 8 C 0.51 7.08 7.95 -10.98 -0.09 6.99 16 9 O -0.52 -9.82 16.80 5.55 0.09 -9.72 16 10 N -0.62 -7.89 3.43 -171.57 -0.59 -8.48 16 11 C 0.11 1.04 6.48 -3.05 -0.02 1.02 16 12 C -0.13 -1.43 3.14 -89.45 -0.28 -1.71 16 13 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 14 C -0.10 -1.16 6.62 -25.67 -0.17 -1.33 16 15 C -0.14 -2.25 6.74 -23.33 -0.16 -2.41 16 16 C 0.20 3.63 3.43 -67.96 -0.23 3.39 16 17 H 0.05 1.02 8.12 -51.93 -0.42 0.60 16 18 N -0.72 -17.10 5.12 -53.45 -0.27 -17.38 16 19 C -0.24 -6.49 9.97 -15.06 -0.15 -6.64 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 23 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 C -0.12 -1.76 2.18 -91.24 -0.20 -1.96 16 28 H 0.08 1.20 7.75 -51.93 -0.40 0.80 16 29 C 0.13 2.06 6.82 -4.13 -0.03 2.03 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.43 7.08 -51.93 -0.37 0.06 16 33 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.12 1.01 7.91 -51.93 -0.41 0.60 16 36 H 0.12 0.78 7.04 -51.93 -0.37 0.42 16 37 H 0.08 0.50 7.58 -51.93 -0.39 0.11 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.37 7.98 -51.93 -0.41 0.95 16 43 H 0.38 9.75 7.63 -40.82 -0.31 9.44 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -34.89 375.96 -8.78 -43.66 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -7.28 Total: 7.23 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -2.29 Total: -2.79 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.07 Total: -61.10 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.89 -8.78 -43.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026364240.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.973 kcal (2) G-P(sol) polarization free energy of solvation -34.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds