Wall clock time and date at job start Tue Mar 31 2020 05:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.54559 * 2 1 4 4 C 1.53140 * 109.50418 * 239.89531 * 2 1 3 5 5 C 1.53246 * 109.52382 * 170.26256 * 4 2 1 6 6 N 1.46578 * 108.78546 * 50.58301 * 5 4 2 7 7 C 1.34865 * 127.50446 * 162.80751 * 6 5 4 8 8 C 1.36565 * 106.79181 * 180.11334 * 7 6 5 9 9 C 1.47322 * 126.21589 * 179.97438 * 8 7 6 10 10 O 1.21626 * 119.99773 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00142 * 179.97438 * 9 8 7 12 12 C 1.46502 * 119.99832 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47152 * 180.02562 * 12 11 9 14 14 H 1.09001 * 112.96739 * 306.67871 * 13 12 11 15 15 C 1.53952 * 113.77180 * 175.00010 * 13 12 11 16 16 C 1.53944 * 86.28957 * 222.09036 * 15 13 12 17 17 N 1.47581 * 113.76929 * 78.50517 * 13 12 11 18 18 C 1.36943 * 134.49243 * 318.94158 * 17 13 12 19 19 H 1.07996 * 119.99975 * 0.02562 * 18 17 13 20 20 C 1.38812 * 119.99706 * 180.02562 * 18 17 13 21 21 N 1.31617 * 120.00321 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99661 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47321 * 59.99839 * 22 20 18 24 24 H 1.48504 * 109.47286 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47163 * 300.00086 * 22 20 18 26 26 N 1.35900 * 107.57592 * 359.95909 * 8 7 6 27 27 C 1.29795 * 108.84855 * 359.97438 * 26 8 7 28 28 C 1.51099 * 127.17267 * 180.13597 * 27 26 8 29 29 H 1.09004 * 109.46896 * 180.11060 * 1 2 3 30 30 H 1.09002 * 109.46796 * 300.10602 * 1 2 3 31 31 H 1.09000 * 109.47324 * 60.10639 * 1 2 3 32 32 H 1.08996 * 109.46722 * 50.24229 * 4 2 1 33 33 H 1.09003 * 109.46061 * 290.27895 * 4 2 1 34 34 H 1.09004 * 109.58159 * 170.37184 * 5 4 2 35 35 H 1.08995 * 109.58272 * 290.64837 * 5 4 2 36 36 H 1.08004 * 126.60482 * 0.13541 * 7 6 5 37 37 H 0.97000 * 120.00278 * 0.02562 * 11 9 8 38 38 H 1.08997 * 109.47153 * 300.00143 * 12 11 9 39 39 H 1.08997 * 109.46843 * 60.00190 * 12 11 9 40 40 H 1.08999 * 113.73818 * 336.44039 * 15 13 12 41 41 H 1.08996 * 113.73749 * 107.63846 * 15 13 12 42 42 H 1.08999 * 113.76672 * 137.90474 * 16 15 13 43 43 H 1.08995 * 113.77340 * 269.19160 * 16 15 13 44 44 H 0.97001 * 120.00522 * 180.02562 * 21 20 18 45 45 H 1.09005 * 109.71706 * 283.67936 * 28 27 26 46 46 H 1.08997 * 109.72471 * 44.28646 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8947 1.0272 0.0000 4 6 2.0413 -0.7240 -1.2488 5 6 3.5542 -0.5165 -1.3778 6 7 4.1874 -0.8519 -0.0991 7 6 5.4907 -1.1138 0.1280 8 6 5.6138 -1.3753 1.4627 9 6 6.8597 -1.7148 2.1719 10 8 7.9086 -1.7824 1.5600 11 7 6.8373 -1.9496 3.4988 12 6 8.0764 -2.2868 4.2041 13 6 7.7756 -2.5032 5.6885 14 1 7.2450 -1.6657 6.1415 15 6 8.9900 -2.9826 6.5043 16 6 8.0148 -3.9498 7.1995 17 7 7.1806 -3.8199 5.9890 18 6 6.2345 -4.6056 5.3866 19 1 5.7555 -4.2730 4.4777 20 6 5.8913 -5.8295 5.9444 21 7 6.4755 -6.2351 7.0518 22 14 4.6012 -6.9016 5.1223 23 1 5.0462 -7.2457 3.7479 24 1 4.4182 -8.1475 5.9093 25 1 3.3140 -6.1640 5.0556 26 7 4.3785 -1.2649 2.0182 27 6 3.5275 -0.9521 1.0894 28 6 2.0424 -0.7251 1.2506 29 1 -0.3633 -1.0277 0.0020 30 1 -0.3633 0.5155 0.8891 31 1 -0.3634 0.5122 -0.8909 32 1 1.5431 -0.3224 -2.1311 33 1 1.8268 -1.7894 -1.1643 34 1 3.9465 -1.1651 -2.1611 35 1 3.7601 0.5242 -1.6280 36 1 6.2843 -1.1160 -0.6046 37 1 6.0008 -1.8953 3.9869 38 1 8.4977 -3.1992 3.7823 39 1 8.7910 -1.4713 4.0929 40 1 9.7514 -3.4822 5.9053 41 1 9.4021 -2.2211 7.1663 42 1 8.4202 -4.9506 7.3484 43 1 7.5549 -3.5393 8.0984 44 1 6.2359 -7.0906 7.4414 45 1 1.5330 -1.6832 1.3543 46 1 1.8575 -0.1130 2.1334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038400021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:09 Heat of formation + Delta-G solvation = 65.743993 kcal Electronic energy + Delta-G solvation = -26658.289254 eV Core-core repulsion = 22971.087248 eV Total energy + Delta-G solvation = -3687.202006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.44972 -39.02435 -37.81716 -37.29674 -34.15706 -33.73643 -32.06084 -30.60954 -29.78308 -28.01042 -27.65077 -26.66770 -24.30368 -23.25250 -23.06212 -21.54951 -21.46780 -19.75436 -19.33829 -18.95010 -17.64022 -16.65918 -16.27477 -15.98240 -15.46894 -15.13195 -15.07282 -14.79931 -14.36593 -14.04000 -13.91641 -13.88436 -13.65567 -13.51693 -13.00047 -12.85425 -12.72907 -12.52344 -12.03670 -11.71640 -11.47749 -11.31352 -11.26985 -11.22224 -10.98823 -10.90508 -10.64279 -10.46758 -10.18755 -9.95606 -9.75817 -9.66339 -9.60549 -9.24455 -8.68583 -8.55240 -8.24807 -6.78111 -5.65323 -2.96881 1.70220 2.48190 2.49883 3.47306 3.50649 3.52524 3.74436 3.90411 3.93520 4.09162 4.17515 4.25291 4.54627 4.67713 4.72435 4.84093 4.91198 5.12766 5.16449 5.19200 5.27898 5.28702 5.33753 5.40700 5.51354 5.54072 5.65963 5.69449 5.74015 5.84199 5.87093 6.04628 6.05358 6.21258 6.40963 6.49987 6.53509 6.73057 6.84808 6.95170 7.08032 7.36168 7.52014 7.70715 7.82149 8.10293 8.20767 8.76555 9.17074 9.82770 10.70767 11.51643 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.003543 C = 0.003035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.947293 B = 7900.819108 C = 9222.877985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.078 0.922 4 C -0.132 4.132 5 C 0.102 3.898 6 N -0.457 5.457 7 C 0.029 3.971 8 C -0.054 4.054 9 C 0.599 3.401 10 O -0.560 6.560 11 N -0.698 5.698 12 C 0.123 3.877 13 C 0.126 3.874 14 H 0.050 0.950 15 C -0.156 4.156 16 C 0.159 3.841 17 N -0.602 5.602 18 C -0.213 4.213 19 H 0.080 0.920 20 C -0.008 4.008 21 N -0.923 5.923 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 N -0.451 5.451 27 C 0.207 3.793 28 C -0.029 4.029 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.187 0.813 37 H 0.411 0.589 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.026 0.974 44 H 0.252 0.748 45 H 0.092 0.908 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.326 15.318 -16.330 24.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.097 0.903 4 C -0.169 4.169 5 C -0.020 4.020 6 N -0.140 5.140 7 C -0.109 4.109 8 C -0.183 4.183 9 C 0.384 3.616 10 O -0.439 6.439 11 N -0.347 5.347 12 C -0.001 4.001 13 C 0.019 3.981 14 H 0.067 0.933 15 C -0.195 4.195 16 C 0.034 3.966 17 N -0.328 5.328 18 C -0.341 4.341 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.571 5.571 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.212 1.212 26 N -0.170 5.170 27 C -0.056 4.056 28 C -0.068 4.068 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.204 0.796 37 H 0.246 0.754 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.044 0.956 44 H 0.062 0.938 45 H 0.110 0.890 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.985 14.857 -16.038 23.636 hybrid contribution -0.986 -0.535 -1.043 1.532 sum -9.972 14.322 -17.081 24.419 Atomic orbital electron populations 1.21802 0.93623 1.02521 1.02355 1.21267 0.96810 0.99810 0.93704 0.90343 1.21996 0.92887 1.02574 0.99466 1.22047 0.94056 1.02313 0.83539 1.45307 1.07369 1.51796 1.09499 1.22374 0.86024 1.04270 0.98241 1.20736 0.92898 1.12925 0.91789 1.16873 0.85920 0.76742 0.82045 1.90745 1.31260 1.54521 1.67383 1.45766 1.12659 1.68559 1.07677 1.21769 0.85542 1.00073 0.92730 1.22504 0.93236 0.90658 0.91743 0.93290 1.23774 0.96862 0.99600 0.99216 1.22190 0.87628 0.97650 0.89156 1.46085 1.46239 1.14705 1.25739 1.18968 1.12956 0.97291 1.04865 0.90271 1.24721 1.00272 0.97913 0.97540 1.69809 1.45056 1.21428 1.20772 0.86276 0.81594 0.79948 0.78466 1.21300 1.21665 1.21240 1.70441 0.99251 1.16947 1.30388 1.23487 0.96567 1.05095 0.80474 1.20312 0.85015 1.02390 0.99077 0.92116 0.91900 0.92231 0.89133 0.90360 0.88912 0.89503 0.79609 0.75380 0.90957 0.92171 0.90521 0.92847 0.90857 0.95647 0.93801 0.88965 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.17 37.16 0.34 -0.33 16 2 C -0.10 -0.58 2.74 -90.35 -0.25 -0.83 16 3 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 4 C -0.13 -0.68 5.24 -26.53 -0.14 -0.82 16 5 C 0.10 0.66 6.96 -3.87 -0.03 0.63 16 6 N -0.46 -5.16 3.11 -113.42 -0.35 -5.51 16 7 C 0.03 0.41 11.32 -16.82 -0.19 0.22 16 8 C -0.05 -0.95 6.98 -82.97 -0.58 -1.53 16 9 C 0.60 11.96 7.81 -12.57 -0.10 11.86 16 10 O -0.56 -12.18 16.88 5.25 0.09 -12.10 16 11 N -0.70 -13.98 5.52 -61.42 -0.34 -14.32 16 12 C 0.12 2.47 5.54 -4.04 -0.02 2.44 16 13 C 0.13 2.62 4.33 -66.86 -0.29 2.33 16 14 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 15 C -0.16 -3.00 7.86 -25.80 -0.20 -3.21 16 16 C 0.16 3.82 7.51 -2.97 -0.02 3.79 16 17 N -0.60 -15.54 3.58 -170.73 -0.61 -16.15 16 18 C -0.21 -6.09 10.51 -15.06 -0.16 -6.24 16 19 H 0.08 2.24 7.80 -52.49 -0.41 1.83 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -28.04 11.38 55.49 0.63 -27.40 16 22 Si 0.91 23.19 29.55 -169.99 -5.02 18.17 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 N -0.45 -7.69 11.00 -7.01 -0.08 -7.77 16 27 C 0.21 2.73 7.64 -154.64 -1.18 1.55 16 28 C -0.03 -0.26 5.64 -27.49 -0.16 -0.42 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.27 8.12 -51.93 -0.42 -0.15 16 33 H 0.08 0.47 8.11 -51.93 -0.42 0.05 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.19 2.16 8.06 -52.48 -0.42 1.73 16 37 H 0.41 8.36 8.18 -40.82 -0.33 8.02 16 38 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 1.94 7.15 -51.93 -0.37 1.57 16 43 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.09 0.82 8.11 -51.93 -0.42 0.40 16 46 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 376.73 15.07 5.68 5.68 Total: -1.00 -35.79 376.73 -10.50 -46.30 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -7.43 Total: 4.01 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: -3.07 Total: 9.10 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -0.75 Total: -71.16 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.79 -10.50 -46.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038400021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.040 kcal (2) G-P(sol) polarization free energy of solvation -35.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds