Wall clock time and date at job start Tue Mar 31 2020 05:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.70109 * 2 1 4 4 C 1.53190 * 109.58727 * 120.35174 * 2 1 3 5 5 C 1.53045 * 109.31586 * 174.41994 * 4 2 1 6 6 H 1.08990 * 109.46263 * 178.61617 * 5 4 2 7 7 N 1.46506 * 109.45722 * 58.65501 * 5 4 2 8 8 C 1.36936 * 119.99949 * 154.99709 * 7 5 4 9 9 H 1.08001 * 120.00017 * 0.02562 * 8 7 5 10 10 C 1.38808 * 120.00095 * 180.02562 * 8 7 5 11 11 N 1.31617 * 119.99993 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 120.00235 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.46974 * 59.99725 * 12 10 8 14 14 H 1.48493 * 109.47256 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46791 * 300.00236 * 12 10 8 16 16 C 1.53042 * 109.53673 * 298.64154 * 5 4 2 17 17 C 1.52757 * 109.38561 * 61.23503 * 16 5 4 18 18 N 1.46925 * 109.01174 * 305.58872 * 17 16 5 19 19 C 1.34779 * 120.63182 * 233.58659 * 18 17 16 20 20 O 1.21279 * 119.99852 * 174.66640 * 19 18 17 21 21 C 1.50699 * 119.99824 * 354.66271 * 19 18 17 22 22 C 1.52996 * 109.47167 * 180.02562 * 21 19 18 23 23 C 1.50697 * 109.47360 * 180.02562 * 22 21 19 24 24 C 1.38608 * 120.79575 * 269.71987 * 23 22 21 25 25 N 1.32335 * 119.09826 * 179.71853 * 24 23 22 26 26 C 1.31791 * 120.82351 * 0.56664 * 25 24 23 27 27 N 1.31800 * 121.75199 * 359.70818 * 26 25 24 28 28 C 1.32336 * 120.81788 * 359.97438 * 27 26 25 29 29 H 1.08994 * 109.47167 * 176.03321 * 1 2 3 30 30 H 1.09000 * 109.47240 * 296.03205 * 1 2 3 31 31 H 1.09000 * 109.46855 * 56.02686 * 1 2 3 32 32 H 1.08998 * 109.49944 * 294.37798 * 4 2 1 33 33 H 1.09000 * 109.49507 * 54.47597 * 4 2 1 34 34 H 0.96998 * 119.99722 * 335.00310 * 7 5 4 35 35 H 0.97005 * 120.00036 * 180.02562 * 11 10 8 36 36 H 1.09003 * 109.49294 * 181.31667 * 16 5 4 37 37 H 1.08998 * 109.49641 * 301.37647 * 16 5 4 38 38 H 1.09006 * 109.50882 * 185.70458 * 17 16 5 39 39 H 1.09008 * 109.43335 * 65.42475 * 17 16 5 40 40 H 1.08999 * 109.47478 * 300.00298 * 21 19 18 41 41 H 1.09007 * 109.47148 * 60.00208 * 21 19 18 42 42 H 1.09008 * 109.47080 * 300.00355 * 22 21 19 43 43 H 1.09003 * 109.47341 * 59.99579 * 22 21 19 44 44 H 1.07992 * 120.44530 * 0.02562 * 24 23 22 45 45 H 1.08000 * 119.12675 * 179.73048 * 26 25 24 46 46 H 1.08000 * 120.44539 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 1.2454 5 6 3.5675 -0.8480 1.1702 6 1 3.9378 -1.3447 2.0669 7 7 4.1571 0.4898 1.0749 8 6 5.4414 0.7038 1.4990 9 1 6.0199 -0.1137 1.9033 10 6 5.9999 1.9715 1.4092 11 7 5.2948 2.9678 0.9169 12 14 7.7521 2.2633 1.9871 13 1 8.6800 1.4063 1.2062 14 1 8.1088 3.6905 1.7850 15 1 7.8607 1.9247 3.4288 16 6 3.9569 -1.6657 -0.0635 17 6 3.4644 -0.9519 -1.3210 18 7 2.0226 -0.6995 -1.1945 19 6 1.1673 -1.1070 -2.1532 20 8 -0.0281 -0.9797 -1.9933 21 6 1.6966 -1.7207 -3.4237 22 6 0.5264 -2.0922 -4.3366 23 6 1.0555 -2.7064 -5.6069 24 6 1.3479 -1.9175 -6.7084 25 7 1.8163 -2.4915 -7.8050 26 6 1.9945 -3.7961 -7.8609 27 7 1.7223 -4.5780 -6.8354 28 6 1.2566 -4.0743 -5.7037 29 1 -0.3633 -1.0251 -0.0711 30 1 -0.3634 0.4510 0.9234 31 1 -0.3633 0.5743 -0.8522 32 1 1.7660 -0.1667 2.1368 33 1 1.6030 -1.7252 1.2913 34 1 3.6376 1.2240 0.7115 35 1 5.6851 3.8536 0.8538 36 1 5.0412 -1.7696 -0.1036 37 1 3.4988 -2.6530 -0.0049 38 1 3.6504 -1.5799 -2.1924 39 1 3.9929 -0.0049 -1.4310 40 1 2.3406 -1.0036 -3.9328 41 1 2.2691 -2.6166 -3.1835 42 1 -0.1181 -2.8092 -3.8277 43 1 -0.0459 -1.1961 -4.5768 44 1 1.2002 -0.8484 -6.6705 45 1 2.3742 -4.2363 -8.7712 46 1 1.0351 -4.7206 -4.8673 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044683078.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:51 Heat of formation + Delta-G solvation = 31.087885 kcal Electronic energy + Delta-G solvation = -26879.194537 eV Core-core repulsion = 23190.489729 eV Total energy + Delta-G solvation = -3688.704808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.32521 -40.34248 -37.61717 -35.11731 -34.22198 -33.97773 -32.72162 -31.95515 -30.30389 -29.09433 -27.06013 -25.73753 -24.88316 -24.10335 -23.49370 -22.68292 -21.37307 -19.83997 -18.31425 -17.92223 -17.88982 -17.25440 -16.70235 -15.88826 -15.58828 -15.04271 -14.73251 -14.60054 -14.11010 -13.96140 -13.93161 -13.87482 -13.78569 -13.57942 -13.09036 -12.86530 -12.50854 -12.38567 -12.06740 -11.96508 -11.55563 -11.33044 -11.19621 -11.10509 -11.09642 -10.93347 -10.83513 -10.65244 -10.45066 -10.29723 -9.98548 -9.72207 -9.66994 -9.50511 -8.98790 -8.81648 -8.17843 -7.03865 -5.83475 -3.12675 0.57035 0.77018 2.78038 3.18340 3.38814 3.44117 3.44858 3.49200 3.85941 3.92797 4.29766 4.33436 4.51681 4.53416 4.77331 4.87201 5.01735 5.12115 5.20697 5.28491 5.36992 5.39513 5.43963 5.49796 5.55472 5.67895 5.73833 5.81391 5.83551 5.87174 5.98145 6.09066 6.10186 6.15176 6.28959 6.39000 6.46129 6.55621 6.64390 6.69837 6.73675 6.80882 7.03043 7.63489 7.72031 7.76582 8.35017 8.38247 9.46432 10.02786 10.37702 11.38836 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.015250 B = 0.002980 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.579165 B = 9394.147410 C =10400.214615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.145 3.855 3 H 0.079 0.921 4 C -0.133 4.133 5 C 0.173 3.827 6 H 0.050 0.950 7 N -0.722 5.722 8 C -0.241 4.241 9 H 0.069 0.931 10 C -0.011 4.011 11 N -0.933 5.933 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.292 1.292 15 H -0.286 1.286 16 C -0.149 4.149 17 C 0.113 3.887 18 N -0.597 5.597 19 C 0.513 3.487 20 O -0.546 6.546 21 C -0.138 4.138 22 C -0.055 4.055 23 C -0.183 4.183 24 C 0.150 3.850 25 N -0.518 5.518 26 C 0.283 3.717 27 N -0.519 5.519 28 C 0.149 3.851 29 H 0.067 0.933 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.168 0.832 45 H 0.195 0.805 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.155 -12.218 -11.576 19.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.042 3.958 3 H 0.097 0.903 4 C -0.172 4.172 5 C 0.063 3.937 6 H 0.068 0.932 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.087 0.913 10 C -0.207 4.207 11 N -0.581 5.581 12 Si 0.737 3.263 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 C -0.190 4.190 17 C -0.009 4.009 18 N -0.329 5.329 19 C 0.301 3.699 20 O -0.425 6.425 21 C -0.178 4.178 22 C -0.094 4.094 23 C -0.187 4.187 24 C -0.015 4.015 25 N -0.231 5.231 26 C -0.004 4.004 27 N -0.232 5.232 28 C -0.016 4.016 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.219 0.781 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.186 0.814 45 H 0.211 0.789 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.232 -12.534 -12.260 19.815 hybrid contribution 0.877 0.826 0.958 1.539 sum -8.355 -11.708 -11.302 18.292 Atomic orbital electron populations 1.22188 0.93157 1.03167 1.00356 1.21272 0.94827 0.95947 0.83757 0.90279 1.22240 0.97312 1.00219 0.97447 1.20191 0.90485 0.88105 0.94922 0.93158 1.42503 1.13762 1.04694 1.75468 1.19183 0.89787 0.94134 1.34092 0.91265 1.24722 0.98273 0.95887 1.01864 1.69640 1.36572 1.00629 1.51225 0.86298 0.84704 0.76854 0.78484 1.21311 1.21746 1.21313 1.22432 1.01418 0.97951 0.97248 1.21644 0.79334 1.01753 0.98163 1.48190 1.07838 1.56628 1.20248 1.20422 0.86459 0.78404 0.84648 1.90735 1.15572 1.56565 1.79632 1.21734 0.99194 1.02418 0.94460 1.20216 0.96800 1.02019 0.90373 1.21783 1.02003 0.96226 0.98663 1.23245 0.89928 1.01013 0.87356 1.68442 1.13458 1.13601 1.27634 1.24973 0.92548 0.85979 0.96930 1.68441 1.12543 1.41251 1.00980 1.23212 0.90444 0.92770 0.95220 0.91436 0.94219 0.91447 0.90803 0.92136 0.78145 0.93420 0.90781 0.93344 0.91285 0.89737 0.88862 0.89014 0.89505 0.89429 0.81440 0.78891 0.81523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 7.59 37.16 0.28 -1.70 16 2 C 0.14 2.32 3.20 -67.60 -0.22 2.10 16 3 H 0.08 1.46 6.64 -51.93 -0.34 1.12 16 4 C -0.13 -2.13 5.07 -26.61 -0.13 -2.26 16 5 C 0.17 3.15 3.10 -67.88 -0.21 2.94 16 6 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 7 N -0.72 -16.52 4.31 -53.38 -0.23 -16.75 16 8 C -0.24 -6.25 9.93 -15.06 -0.15 -6.40 16 9 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 10 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 11 N -0.93 -26.92 13.06 55.49 0.72 -26.20 16 12 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 C -0.15 -2.34 5.76 -26.83 -0.15 -2.49 16 17 C 0.11 1.67 6.04 -3.94 -0.02 1.64 16 18 N -0.60 -8.76 2.98 -165.48 -0.49 -9.25 16 19 C 0.51 6.89 7.60 -10.99 -0.08 6.81 16 20 O -0.55 -8.43 11.38 5.56 0.06 -8.37 16 21 C -0.14 -1.33 4.09 -27.89 -0.11 -1.45 16 22 C -0.06 -0.47 4.68 -27.89 -0.13 -0.60 16 23 C -0.18 -1.53 5.17 -104.36 -0.54 -2.07 16 24 C 0.15 1.34 11.01 -17.20 -0.19 1.15 16 25 N -0.52 -5.27 10.44 -14.58 -0.15 -5.42 16 26 C 0.28 2.63 12.29 -92.15 -1.13 1.49 16 27 N -0.52 -5.17 10.44 -14.58 -0.15 -5.32 16 28 C 0.15 1.29 11.01 -17.20 -0.19 1.10 16 29 H 0.07 1.05 6.73 -51.93 -0.35 0.70 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.08 6.77 -51.93 -0.35 0.73 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.38 9.41 6.06 -40.82 -0.25 9.16 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.81 5.96 -51.93 -0.31 0.50 16 39 H 0.08 1.50 7.74 -51.92 -0.40 1.10 16 40 H 0.09 0.86 8.12 -51.93 -0.42 0.44 16 41 H 0.09 0.79 7.47 -51.93 -0.39 0.40 16 42 H 0.09 0.74 8.06 -51.92 -0.42 0.33 16 43 H 0.09 0.77 8.06 -51.93 -0.42 0.36 16 44 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.19 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -30.70 366.23 -9.82 -40.53 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.00 Total: 8.84 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -3.08 Total: -0.13 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -0.30 Total: -62.94 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.06 Total: -8.37 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.70 -9.82 -40.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044683078.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.613 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds