Wall clock time and date at job start Tue Mar 31 2020 05:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.58407 * 2 1 4 4 C 1.53187 * 109.58404 * 120.27887 * 2 1 3 5 5 C 1.53047 * 109.31145 * 174.42494 * 4 2 1 6 6 H 1.08997 * 109.45615 * 58.64367 * 5 4 2 7 7 N 1.46502 * 109.45782 * 178.61637 * 5 4 2 8 8 C 1.36939 * 119.99650 * 204.99674 * 7 5 4 9 9 H 1.07998 * 119.99825 * 0.02562 * 8 7 5 10 10 C 1.38811 * 119.99936 * 179.97438 * 8 7 5 11 11 N 1.31617 * 120.00157 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00023 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.46819 * 270.00215 * 12 10 8 14 14 H 1.48496 * 109.47281 * 149.99983 * 12 10 8 15 15 H 1.48504 * 109.46886 * 30.00162 * 12 10 8 16 16 C 1.53039 * 109.53650 * 298.63636 * 5 4 2 17 17 C 1.53184 * 109.31492 * 61.36293 * 16 5 4 18 18 N 1.46921 * 109.58960 * 239.56978 * 2 1 3 19 19 C 1.34782 * 120.63083 * 6.62385 * 18 2 1 20 20 O 1.21284 * 119.99730 * 5.72216 * 19 18 2 21 21 C 1.50697 * 120.00213 * 185.71431 * 19 18 2 22 22 C 1.53000 * 109.47105 * 180.02562 * 21 19 18 23 23 C 1.50705 * 109.46934 * 180.02562 * 22 21 19 24 24 C 1.38600 * 120.80014 * 269.71962 * 23 22 21 25 25 N 1.32330 * 119.10309 * 179.71746 * 24 23 22 26 26 C 1.31790 * 120.81730 * 0.56906 * 25 24 23 27 27 N 1.31802 * 121.76007 * 359.70330 * 26 25 24 28 28 C 1.32329 * 120.81145 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47347 * 294.18319 * 1 2 3 30 30 H 1.08998 * 109.47138 * 54.18276 * 1 2 3 31 31 H 1.09004 * 109.47363 * 174.17826 * 1 2 3 32 32 H 1.09000 * 109.50117 * 54.47377 * 4 2 1 33 33 H 1.08998 * 109.50568 * 294.37710 * 4 2 1 34 34 H 0.96999 * 120.00148 * 25.00046 * 7 5 4 35 35 H 0.97007 * 119.99924 * 359.97438 * 11 10 8 36 36 H 1.09003 * 109.49772 * 181.32130 * 16 5 4 37 37 H 1.09002 * 109.49522 * 301.40970 * 16 5 4 38 38 H 1.08998 * 109.59282 * 185.57424 * 17 16 5 39 39 H 1.09001 * 109.70366 * 65.22028 * 17 16 5 40 40 H 1.08998 * 109.46946 * 300.00228 * 21 19 18 41 41 H 1.08998 * 109.46902 * 59.99964 * 21 19 18 42 42 H 1.08998 * 109.46999 * 299.99698 * 22 21 19 43 43 H 1.08998 * 109.47675 * 59.99941 * 22 21 19 44 44 H 1.08004 * 120.44173 * 359.97438 * 24 23 22 45 45 H 1.08010 * 119.12266 * 179.72527 * 26 25 24 46 46 H 1.08005 * 120.44950 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7277 1.2464 5 6 3.5675 -0.8464 1.1713 6 1 4.0060 0.1489 1.0990 7 7 4.0651 -1.5126 2.3775 8 6 5.3496 -1.2950 2.7992 9 1 5.9956 -0.6320 2.2430 10 6 5.8210 -1.9258 3.9424 11 7 5.0336 -2.7334 4.6206 12 14 7.5731 -1.6285 4.5182 13 1 8.4756 -2.6291 3.8943 14 1 7.6371 -1.7576 5.9961 15 1 7.9992 -0.2622 4.1218 16 6 3.9569 -1.6657 -0.0612 17 6 3.4651 -0.9487 -1.3224 18 7 2.0226 -0.7011 -1.1935 19 6 1.1675 -1.1090 -2.1521 20 8 -0.0057 -0.8086 -2.0861 21 6 1.6691 -1.9383 -3.3061 22 6 0.5050 -2.2643 -4.2439 23 6 1.0066 -3.0941 -5.3976 24 6 1.4577 -2.4921 -6.5616 25 7 1.8961 -3.2529 -7.5516 26 6 1.8965 -4.5665 -7.4444 27 7 1.4701 -5.1738 -6.3551 28 6 1.0221 -4.4780 -5.3224 29 1 -0.3634 0.4210 0.9375 30 1 -0.3633 0.6014 -0.8333 31 1 -0.3634 -1.0224 -0.1042 32 1 1.6029 -1.7236 1.2936 33 1 1.7659 -0.1641 2.1371 34 1 3.4848 -2.1078 2.8772 35 1 4.1236 -2.8876 4.3218 36 1 5.0413 -1.7697 -0.1012 37 1 3.4984 -2.6528 -0.0017 38 1 3.6519 -1.5745 -2.1950 39 1 3.9901 0.0001 -1.4341 40 1 2.4293 -1.3794 -3.8518 41 1 2.1012 -2.8645 -2.9271 42 1 -0.2554 -2.8231 -3.6984 43 1 0.0733 -1.3380 -4.6229 44 1 1.4552 -1.4163 -6.6577 45 1 2.2564 -5.1612 -8.2711 46 1 0.6744 -4.9817 -4.4326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044683079.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:54 Heat of formation + Delta-G solvation = 27.676584 kcal Electronic energy + Delta-G solvation = -26487.541951 eV Core-core repulsion = 22798.689217 eV Total energy + Delta-G solvation = -3688.852733 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.40867 -40.51330 -37.66681 -35.25881 -34.77374 -34.05347 -32.92903 -32.12432 -30.44947 -29.07194 -27.05144 -25.87119 -24.96058 -24.11782 -23.08010 -22.80931 -21.35820 -20.28307 -18.94664 -17.99835 -17.97280 -17.34467 -16.99855 -16.15305 -15.70477 -15.13195 -14.98403 -14.68531 -14.27824 -14.13112 -14.02537 -13.92024 -13.80185 -13.63691 -13.24784 -13.18775 -12.75885 -12.56853 -12.17129 -12.05460 -11.73472 -11.52727 -11.44360 -11.19194 -11.17980 -10.89241 -10.88371 -10.59659 -10.50777 -10.15285 -10.05747 -9.81102 -9.57754 -9.27320 -9.04292 -8.96849 -8.52094 -7.10901 -6.15727 -3.16487 0.48990 0.69670 2.55917 2.93971 3.40736 3.47455 3.52001 3.66095 3.78661 3.85487 4.18207 4.21472 4.41835 4.60188 4.62273 4.70365 4.88977 4.94356 5.03831 5.07910 5.17887 5.23242 5.26307 5.33665 5.38652 5.47464 5.57635 5.69251 5.70627 5.72099 5.78700 5.89840 6.00838 6.01647 6.08681 6.22901 6.30650 6.34371 6.40046 6.57036 6.62142 6.77047 6.90564 7.44019 7.69493 7.74662 8.15461 8.69860 9.16230 10.02725 10.17605 11.32530 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.015676 B = 0.002683 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.719764 B =10433.511811 C =11600.801264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.147 3.853 3 H 0.070 0.930 4 C -0.136 4.136 5 C 0.184 3.816 6 H 0.048 0.952 7 N -0.735 5.735 8 C -0.332 4.332 9 H 0.065 0.935 10 C -0.044 4.044 11 N -0.943 5.943 12 Si 1.082 2.918 13 H -0.295 1.295 14 H -0.288 1.288 15 H -0.295 1.295 16 C -0.151 4.151 17 C 0.107 3.893 18 N -0.603 5.603 19 C 0.515 3.485 20 O -0.540 6.540 21 C -0.139 4.139 22 C -0.055 4.055 23 C -0.185 4.185 24 C 0.150 3.850 25 N -0.519 5.519 26 C 0.285 3.715 27 N -0.518 5.518 28 C 0.151 3.849 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.367 0.633 35 H 0.255 0.745 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.168 0.832 45 H 0.195 0.805 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.522 1.930 -21.206 22.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 H 0.088 0.912 4 C -0.175 4.175 5 C 0.074 3.926 6 H 0.066 0.934 7 N -0.377 5.377 8 C -0.463 4.463 9 H 0.083 0.917 10 C -0.242 4.242 11 N -0.588 5.588 12 Si 0.912 3.088 13 H -0.223 1.223 14 H -0.214 1.214 15 H -0.221 1.221 16 C -0.192 4.192 17 C -0.016 4.016 18 N -0.336 5.336 19 C 0.303 3.697 20 O -0.419 6.419 21 C -0.179 4.179 22 C -0.094 4.094 23 C -0.189 4.189 24 C -0.016 4.016 25 N -0.232 5.232 26 C -0.003 4.003 27 N -0.231 5.231 28 C -0.015 4.015 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.200 0.800 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.185 0.815 45 H 0.212 0.788 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.497 1.306 -20.843 22.188 hybrid contribution -1.267 0.565 -0.339 1.428 sum -8.763 1.871 -21.181 22.999 Atomic orbital electron populations 1.22178 0.92812 1.03417 1.00791 1.21281 0.95416 0.95117 0.83782 0.91173 1.22313 0.97557 1.00865 0.96753 1.20093 0.90757 0.94979 0.86760 0.93361 1.42446 1.13039 1.54912 1.27307 1.20047 0.89585 1.26503 1.10191 0.91730 1.25771 1.06269 0.97590 0.94593 1.70852 1.08147 1.38423 1.41428 0.83211 0.74121 0.75070 0.76350 1.22309 1.21364 1.22141 1.22654 1.01819 0.99885 0.94831 1.21866 0.79547 1.00646 0.99578 1.48245 1.07661 1.57334 1.20376 1.20467 0.86016 0.79953 0.83235 1.90738 1.17165 1.57108 1.76876 1.21742 0.99474 1.01145 0.95506 1.20213 0.97035 0.99890 0.92280 1.21761 1.02039 0.96623 0.98445 1.23211 0.89798 1.00856 0.87758 1.68441 1.15896 1.07620 1.31243 1.24998 0.92003 0.88388 0.94900 1.68459 1.11299 1.41897 1.01402 1.23249 0.91047 0.90641 0.96544 0.93819 0.90651 0.91874 0.91964 0.90719 0.80032 0.93322 0.90589 0.92337 0.90436 0.91345 0.88933 0.88715 0.89411 0.89444 0.81524 0.78824 0.81449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 7.61 37.16 0.28 -1.52 16 2 C 0.15 2.00 3.49 -67.60 -0.24 1.77 16 3 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.14 -2.16 4.84 -26.61 -0.13 -2.29 16 5 C 0.18 3.42 2.73 -67.88 -0.19 3.24 16 6 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 7 N -0.74 -17.65 5.12 -53.38 -0.27 -17.92 16 8 C -0.33 -9.00 9.93 -15.06 -0.15 -9.15 16 9 H 0.06 1.72 7.83 -52.49 -0.41 1.31 16 10 C -0.04 -1.26 5.50 -17.43 -0.10 -1.36 16 11 N -0.94 -28.73 13.70 55.49 0.76 -27.97 16 12 Si 1.08 25.43 29.92 -169.99 -5.09 20.34 16 13 H -0.30 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 16 C -0.15 -2.39 5.66 -26.62 -0.15 -2.54 16 17 C 0.11 1.26 6.35 -3.72 -0.02 1.23 16 18 N -0.60 -7.52 2.97 -165.23 -0.49 -8.01 16 19 C 0.51 6.06 7.50 -10.98 -0.08 5.98 16 20 O -0.54 -7.56 11.55 5.55 0.06 -7.50 16 21 C -0.14 -1.14 4.04 -27.88 -0.11 -1.25 16 22 C -0.06 -0.41 4.68 -27.88 -0.13 -0.54 16 23 C -0.18 -1.40 5.17 -104.35 -0.54 -1.94 16 24 C 0.15 1.17 11.01 -17.20 -0.19 0.98 16 25 N -0.52 -4.82 10.44 -14.58 -0.15 -4.97 16 26 C 0.28 2.48 12.28 -92.15 -1.13 1.35 16 27 N -0.52 -4.99 10.44 -14.58 -0.15 -5.14 16 28 C 0.15 1.25 11.01 -17.20 -0.19 1.06 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 1.05 6.57 -51.93 -0.34 0.71 16 31 H 0.06 0.92 6.93 -51.93 -0.36 0.56 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.37 9.22 6.63 -40.82 -0.27 8.95 16 35 H 0.26 7.66 6.78 -40.82 -0.28 7.39 16 36 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.08 0.72 5.93 -51.93 -0.31 0.42 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.64 7.71 -51.93 -0.40 0.24 16 41 H 0.09 0.75 7.92 -51.93 -0.41 0.34 16 42 H 0.09 0.70 8.06 -51.93 -0.42 0.28 16 43 H 0.09 0.65 8.06 -51.93 -0.42 0.23 16 44 H 0.17 0.90 8.06 -52.48 -0.42 0.48 16 45 H 0.20 1.11 8.06 -52.48 -0.42 0.69 16 46 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 368.91 15.07 5.56 5.56 Total: -1.00 -33.09 368.91 -9.89 -42.98 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -7.06 Total: 7.63 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -3.06 Total: -5.00 kcal Atomic # 7 Polarization: -63.71 SS G_CDS: -0.31 Total: -64.02 kcal Atomic # 8 Polarization: -7.56 SS G_CDS: 0.06 Total: -7.50 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -5.09 Total: 20.34 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.09 -9.89 -42.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044683079.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.661 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds