Wall clock time and date at job start Tue Mar 31 2020 05:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.70483 * 2 1 4 4 C 1.53164 * 109.59006 * 239.63501 * 2 1 3 5 5 C 1.53037 * 109.32925 * 185.57517 * 4 2 1 6 6 H 1.09001 * 109.46316 * 181.38714 * 5 4 2 7 7 N 1.46507 * 109.46019 * 301.35882 * 5 4 2 8 8 C 1.36938 * 120.00200 * 205.02642 * 7 5 4 9 9 H 1.07998 * 119.99481 * 0.02562 * 8 7 5 10 10 C 1.38802 * 119.99763 * 179.97438 * 8 7 5 11 11 N 1.31622 * 120.00458 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99894 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47144 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.47446 * 240.00088 * 12 10 8 15 15 H 1.48499 * 109.47157 * 120.00258 * 12 10 8 16 16 C 1.53039 * 109.53014 * 61.37076 * 5 4 2 17 17 C 1.53189 * 109.31236 * 298.64566 * 16 5 4 18 18 N 1.46928 * 108.77687 * 54.63431 * 17 16 5 19 19 C 1.34771 * 120.63059 * 126.41394 * 18 17 16 20 20 O 1.21289 * 119.99843 * 174.21026 * 19 18 17 21 21 C 1.50701 * 120.00468 * 354.20618 * 19 18 17 22 22 C 1.52995 * 109.47244 * 180.02562 * 21 19 18 23 23 C 1.50701 * 109.47244 * 180.02562 * 22 21 19 24 24 C 1.38587 * 120.80152 * 269.72928 * 23 22 21 25 25 N 1.32347 * 119.10402 * 179.71706 * 24 23 22 26 26 C 1.31788 * 120.81334 * 0.56020 * 25 24 23 27 27 N 1.31791 * 121.75830 * 359.71304 * 26 25 24 28 28 C 1.32329 * 120.81911 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.46787 * 305.44249 * 1 2 3 30 30 H 1.08999 * 109.46783 * 65.43938 * 1 2 3 31 31 H 1.08993 * 109.47257 * 185.44122 * 1 2 3 32 32 H 1.08997 * 109.47969 * 65.62509 * 4 2 1 33 33 H 1.09001 * 109.50524 * 305.53415 * 4 2 1 34 34 H 0.97004 * 119.99402 * 25.02555 * 7 5 4 35 35 H 0.96997 * 119.99985 * 0.02562 * 11 10 8 36 36 H 1.09006 * 109.49639 * 58.59660 * 16 5 4 37 37 H 1.08995 * 109.50042 * 178.65682 * 16 5 4 38 38 H 1.09010 * 109.58516 * 174.41670 * 17 16 5 39 39 H 1.08997 * 109.58608 * 294.84385 * 17 16 5 40 40 H 1.09000 * 109.47019 * 300.00643 * 21 19 18 41 41 H 1.09004 * 109.46611 * 60.00012 * 21 19 18 42 42 H 1.09000 * 109.47620 * 300.00254 * 22 21 19 43 43 H 1.09004 * 109.47323 * 60.00428 * 22 21 19 44 44 H 1.08005 * 120.45175 * 359.97438 * 24 23 22 45 45 H 1.08004 * 119.12181 * 179.68601 * 26 25 24 46 46 H 1.08006 * 120.44845 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0261 0.0000 4 6 2.0435 -0.7294 -1.2450 5 6 3.5675 -0.8481 -1.1701 6 1 3.9376 -1.3451 -2.0668 7 7 4.1571 0.4897 -1.0749 8 6 5.4412 0.7038 -1.4997 9 1 6.0191 -0.1135 -1.9052 10 6 5.9996 1.9713 -1.4099 11 7 5.2951 2.9675 -0.9161 12 14 7.7511 2.2636 -1.9900 13 1 8.3225 0.9913 -2.4998 14 1 8.5727 2.7562 -0.8554 15 1 7.7502 3.2758 -3.0766 16 6 3.9569 -1.6658 0.0635 17 6 3.4650 -0.9471 1.3237 18 7 2.0225 -0.6996 1.1945 19 6 1.1674 -1.1062 2.1536 20 8 -0.0056 -0.8051 2.0876 21 6 1.6687 -1.9351 3.3081 22 6 0.5043 -2.2605 4.2457 23 6 1.0057 -3.0889 5.4005 24 6 1.0171 -4.4729 5.3289 25 7 1.4698 -5.1672 6.3607 26 6 1.8956 -4.5585 7.4493 27 7 1.8943 -3.2449 7.5551 28 6 1.4618 -2.4851 6.5618 29 1 -0.3633 0.5959 0.8373 30 1 -0.3633 0.4272 -0.9347 31 1 -0.3633 -1.0230 0.0974 32 1 1.7659 -0.1668 -2.1363 33 1 1.6030 -1.7254 -1.2910 34 1 3.6378 1.2237 -0.7110 35 1 4.3858 2.8157 -0.6145 36 1 3.4982 -2.6530 0.0053 37 1 5.0411 -1.7703 0.1034 38 1 3.6517 -1.5720 2.1972 39 1 3.9903 0.0019 1.4317 40 1 2.1000 -2.8619 2.9296 41 1 2.4294 -1.3763 3.8532 42 1 0.0726 -1.3340 4.6242 43 1 -0.2561 -2.8195 3.7003 44 1 0.6651 -4.9780 4.4415 45 1 2.2546 -5.1521 8.2771 46 1 1.4638 -1.4091 6.6547 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044683080.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:57 Heat of formation + Delta-G solvation = 30.503828 kcal Electronic energy + Delta-G solvation = -26935.454823 eV Core-core repulsion = 23246.724689 eV Total energy + Delta-G solvation = -3688.730135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.36046 -40.42288 -37.72732 -35.17183 -34.45611 -34.00894 -32.81440 -32.10538 -30.35143 -28.86652 -27.06883 -25.80443 -24.91575 -24.07849 -23.46897 -22.74424 -21.46141 -19.97315 -18.48863 -17.95396 -17.92446 -17.31723 -16.83183 -16.06112 -15.59842 -15.06646 -14.98295 -14.63006 -14.23247 -14.08140 -13.98027 -13.87363 -13.79025 -13.59322 -13.16046 -13.09431 -12.72659 -12.45743 -12.11685 -11.96529 -11.65270 -11.40073 -11.32539 -11.14046 -11.13501 -10.87420 -10.75742 -10.60063 -10.37390 -10.24126 -10.07550 -9.75336 -9.53613 -9.23182 -9.00749 -8.91341 -8.28696 -7.10982 -6.16143 -3.17163 0.53750 0.73845 2.70132 3.09895 3.45651 3.47585 3.53489 3.62733 3.82905 3.89661 4.26336 4.27899 4.47809 4.61204 4.71575 4.80682 4.96965 5.06005 5.14753 5.18410 5.28093 5.32532 5.38741 5.39300 5.53150 5.59413 5.61384 5.74143 5.76865 5.79039 5.88003 5.98232 6.04131 6.06316 6.15703 6.29903 6.36371 6.47039 6.60407 6.61322 6.62378 6.69168 6.93512 7.62863 7.73550 7.75893 8.30222 8.68875 9.15097 10.01537 10.16557 11.31693 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.015922 B = 0.002953 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.121729 B = 9478.968087 C =10422.223749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.146 3.854 3 H 0.074 0.926 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.051 0.949 7 N -0.733 5.733 8 C -0.331 4.331 9 H 0.065 0.935 10 C -0.044 4.044 11 N -0.943 5.943 12 Si 1.084 2.916 13 H -0.295 1.295 14 H -0.293 1.293 15 H -0.293 1.293 16 C -0.149 4.149 17 C 0.114 3.886 18 N -0.598 5.598 19 C 0.513 3.487 20 O -0.544 6.544 21 C -0.138 4.138 22 C -0.055 4.055 23 C -0.183 4.183 24 C 0.150 3.850 25 N -0.519 5.519 26 C 0.284 3.716 27 N -0.518 5.518 28 C 0.151 3.849 29 H 0.076 0.924 30 H 0.041 0.959 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.366 0.634 35 H 0.254 0.746 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.168 0.832 45 H 0.195 0.805 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.133 -13.622 11.017 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.043 3.957 3 H 0.092 0.908 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.069 0.931 7 N -0.377 5.377 8 C -0.462 4.462 9 H 0.083 0.917 10 C -0.242 4.242 11 N -0.589 5.589 12 Si 0.915 3.085 13 H -0.222 1.222 14 H -0.221 1.221 15 H -0.221 1.221 16 C -0.190 4.190 17 C -0.008 4.008 18 N -0.331 5.331 19 C 0.301 3.699 20 O -0.423 6.423 21 C -0.178 4.178 22 C -0.094 4.094 23 C -0.187 4.187 24 C -0.016 4.016 25 N -0.232 5.232 26 C -0.004 4.004 27 N -0.231 5.231 28 C -0.015 4.015 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.201 0.799 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.185 0.815 45 H 0.211 0.789 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -8.050 -13.033 11.462 19.132 hybrid contribution -1.293 -0.536 -0.461 1.474 sum -9.343 -13.569 11.001 19.810 Atomic orbital electron populations 1.22183 0.93053 1.03047 1.00850 1.21219 0.94938 0.95731 0.83796 0.90826 1.22258 0.97403 1.00343 0.97347 1.20120 0.90241 0.87691 0.95064 0.93054 1.42527 1.14087 1.04775 1.76323 1.20086 0.90462 0.97019 1.38626 0.91705 1.25731 1.06072 0.91569 1.00809 1.70835 1.11005 1.32409 1.44630 0.83168 0.74438 0.74785 0.76120 1.22154 1.22057 1.22057 1.22495 1.01516 0.97922 0.97068 1.21727 0.79211 1.01634 0.98270 1.48210 1.07784 1.56906 1.20204 1.20442 0.86029 0.80136 0.83265 1.90727 1.17262 1.57396 1.76943 1.21727 0.99423 1.01016 0.95599 1.20215 0.97041 0.99909 0.92242 1.21772 1.01889 0.96605 0.98471 1.23215 0.91263 0.90647 0.96497 1.68445 1.11378 1.41913 1.01457 1.24980 0.92103 0.88404 0.94896 1.68445 1.15848 1.07626 1.31191 1.23243 0.89643 1.00948 0.87699 0.90550 0.94009 0.92123 0.90830 0.91972 0.79924 0.93422 0.93201 0.90766 0.91071 0.90037 0.88941 0.88913 0.89418 0.89479 0.81527 0.78860 0.81445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 7.61 37.16 0.28 -1.71 16 2 C 0.15 2.31 3.20 -67.61 -0.22 2.10 16 3 H 0.07 1.33 6.64 -51.93 -0.34 0.99 16 4 C -0.13 -2.13 5.07 -26.63 -0.13 -2.27 16 5 C 0.18 3.28 3.10 -67.89 -0.21 3.07 16 6 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 7 N -0.73 -16.83 4.31 -53.39 -0.23 -17.06 16 8 C -0.33 -8.73 9.93 -15.06 -0.15 -8.88 16 9 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 10 C -0.04 -1.23 5.50 -17.43 -0.10 -1.32 16 11 N -0.94 -28.13 13.70 55.49 0.76 -27.37 16 12 Si 1.08 25.20 29.92 -169.99 -5.09 20.11 16 13 H -0.30 -6.44 7.11 56.52 0.40 -6.04 16 14 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 C -0.15 -2.34 5.78 -26.61 -0.15 -2.50 16 17 C 0.11 1.67 6.09 -3.71 -0.02 1.65 16 18 N -0.60 -8.71 2.97 -165.23 -0.49 -9.20 16 19 C 0.51 6.84 7.50 -10.99 -0.08 6.76 16 20 O -0.54 -8.37 11.55 5.55 0.06 -8.30 16 21 C -0.14 -1.31 4.04 -27.88 -0.11 -1.42 16 22 C -0.06 -0.46 4.68 -27.88 -0.13 -0.59 16 23 C -0.18 -1.52 5.17 -104.36 -0.54 -2.05 16 24 C 0.15 1.27 11.01 -17.20 -0.19 1.09 16 25 N -0.52 -5.10 10.44 -14.58 -0.15 -5.25 16 26 C 0.28 2.59 12.28 -92.16 -1.13 1.46 16 27 N -0.52 -5.19 10.44 -14.58 -0.15 -5.34 16 28 C 0.15 1.32 11.01 -17.20 -0.19 1.13 16 29 H 0.08 1.22 6.54 -51.93 -0.34 0.88 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.92 6.96 -51.93 -0.36 0.55 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.37 8.79 4.90 -40.82 -0.20 8.59 16 35 H 0.25 7.47 6.77 -40.82 -0.28 7.20 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 0.83 5.93 -51.92 -0.31 0.53 16 39 H 0.08 1.45 7.74 -51.93 -0.40 1.05 16 40 H 0.09 0.79 7.93 -51.93 -0.41 0.38 16 41 H 0.09 0.83 7.71 -51.93 -0.40 0.43 16 42 H 0.09 0.77 8.06 -51.93 -0.42 0.35 16 43 H 0.09 0.74 8.06 -51.93 -0.42 0.32 16 44 H 0.17 1.04 8.06 -52.48 -0.42 0.62 16 45 H 0.19 1.18 8.06 -52.48 -0.42 0.76 16 46 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 364.62 15.07 5.49 5.49 Total: -1.00 -31.84 364.62 -9.76 -41.60 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.89 Total: 8.80 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -3.08 Total: -3.48 kcal Atomic # 7 Polarization: -63.96 SS G_CDS: -0.27 Total: -64.22 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: 0.06 Total: -8.30 kcal Atomic # 14 Polarization: 25.20 SS G_CDS: -5.09 Total: 20.11 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.84 -9.76 -41.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044683080.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.104 kcal (2) G-P(sol) polarization free energy of solvation -31.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds