Wall clock time and date at job start Tue Mar 31 2020 05:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.58814 * 2 1 4 4 C 1.53188 * 109.58848 * 239.57250 * 2 1 3 5 5 C 1.53041 * 109.31505 * 185.57673 * 4 2 1 6 6 H 1.08998 * 109.45905 * 301.34877 * 5 4 2 7 7 N 1.46497 * 109.46334 * 181.38375 * 5 4 2 8 8 C 1.36932 * 120.00153 * 154.93483 * 7 5 4 9 9 H 1.07997 * 120.00363 * 359.97438 * 8 7 5 10 10 C 1.38820 * 120.00247 * 180.02562 * 8 7 5 11 11 N 1.31615 * 119.99376 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00160 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47109 * 89.99741 * 12 10 8 14 14 H 1.48501 * 109.46974 * 209.99815 * 12 10 8 15 15 H 1.48504 * 109.47023 * 329.99753 * 12 10 8 16 16 C 1.53044 * 109.53693 * 61.36345 * 5 4 2 17 17 C 1.53193 * 109.31194 * 298.63656 * 16 5 4 18 18 N 1.46923 * 109.58550 * 120.27891 * 2 1 3 19 19 C 1.34771 * 120.63185 * 353.38005 * 18 2 1 20 20 O 1.21280 * 120.00197 * 354.22890 * 19 18 2 21 21 C 1.50700 * 119.99923 * 174.23224 * 19 18 2 22 22 C 1.53008 * 109.46978 * 179.97438 * 21 19 18 23 23 C 1.50700 * 109.46917 * 179.97438 * 22 21 19 24 24 C 1.38600 * 120.80449 * 269.72398 * 23 22 21 25 25 N 1.32331 * 119.10326 * 179.72491 * 24 23 22 26 26 C 1.31790 * 120.81984 * 0.56244 * 25 24 23 27 27 N 1.31795 * 121.75246 * 359.70930 * 26 25 24 28 28 C 1.32330 * 120.82336 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47166 * 305.51673 * 1 2 3 30 30 H 1.09003 * 109.47188 * 65.51769 * 1 2 3 31 31 H 1.08998 * 109.47248 * 185.51311 * 1 2 3 32 32 H 1.09001 * 109.50014 * 65.62331 * 4 2 1 33 33 H 1.09006 * 109.49840 * 305.52593 * 4 2 1 34 34 H 0.97006 * 119.99689 * 334.93247 * 7 5 4 35 35 H 0.97007 * 119.99609 * 180.02562 * 11 10 8 36 36 H 1.08997 * 109.49876 * 58.58645 * 16 5 4 37 37 H 1.08997 * 109.50065 * 178.68552 * 16 5 4 38 38 H 1.09002 * 109.58687 * 174.42244 * 17 16 5 39 39 H 1.08999 * 109.58758 * 294.84906 * 17 16 5 40 40 H 1.08998 * 109.47163 * 299.99628 * 21 19 18 41 41 H 1.08996 * 109.47288 * 60.00012 * 21 19 18 42 42 H 1.08998 * 109.47255 * 300.00043 * 22 21 19 43 43 H 1.08996 * 109.46715 * 60.00133 * 22 21 19 44 44 H 1.07995 * 120.44416 * 359.97438 * 24 23 22 45 45 H 1.08000 * 119.12618 * 179.73301 * 26 25 24 46 46 H 1.08002 * 120.45023 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7309 -1.2444 5 6 3.5675 -0.8494 -1.1690 6 1 4.0061 0.1460 -1.0994 7 7 4.0652 -1.5187 -2.3734 8 6 5.3493 -1.3012 -2.7964 9 1 5.9950 -0.6359 -2.2425 10 6 5.8208 -1.9350 -3.9380 11 7 5.0337 -2.7454 -4.6133 12 14 7.5722 -1.6377 -4.5155 13 1 8.4761 -2.6355 -3.8890 14 1 7.6356 -1.7713 -5.9931 15 1 7.9972 -0.2698 -4.1234 16 6 3.9569 -1.6656 0.0657 17 6 3.4650 -0.9452 1.3250 18 7 2.0225 -0.6979 1.1954 19 6 1.1674 -1.1034 2.1550 20 8 -0.0056 -0.8024 2.0886 21 6 1.6688 -1.9307 3.3105 22 6 0.5046 -2.2540 4.2493 23 6 1.0059 -3.0818 5.4044 24 6 1.0157 -4.4660 5.3342 25 7 1.4683 -5.1597 6.3663 26 6 1.8953 -4.5505 7.4542 27 7 1.8956 -3.2367 7.5586 28 6 1.4634 -2.4774 6.5648 29 1 -0.3633 0.5970 0.8365 30 1 -0.3634 0.4259 -0.9353 31 1 -0.3633 -1.0229 0.0987 32 1 1.7660 -0.1695 -2.1366 33 1 1.6030 -1.7270 -1.2891 34 1 3.4852 -2.1160 -2.8711 35 1 5.3633 -3.1886 -5.4107 36 1 3.4983 -2.6527 0.0087 37 1 5.0412 -1.7694 0.1060 38 1 3.6518 -1.5688 2.1992 39 1 3.9902 0.0040 1.4317 40 1 2.1001 -2.8579 2.9333 41 1 2.4294 -1.3712 3.8549 42 1 0.0736 -1.3266 4.6264 43 1 -0.2563 -2.8134 3.7051 44 1 0.6625 -4.9715 4.4476 45 1 2.2549 -5.1437 8.2819 46 1 1.4667 -1.4013 6.6567 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044683081.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:00 Heat of formation + Delta-G solvation = 27.479734 kcal Electronic energy + Delta-G solvation = -26444.639736 eV Core-core repulsion = 22755.778466 eV Total energy + Delta-G solvation = -3688.861269 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.38491 -40.45683 -37.58270 -35.21133 -34.54899 -34.03121 -32.85727 -31.97549 -30.41950 -29.26043 -27.06889 -25.83912 -24.93799 -24.30113 -22.97014 -22.78145 -21.28464 -20.12975 -18.90003 -17.97705 -17.94961 -17.18749 -16.91952 -16.09612 -15.58563 -15.10438 -14.91318 -14.66094 -14.24445 -14.01099 -13.94280 -13.88568 -13.74531 -13.63409 -13.18205 -12.95393 -12.62118 -12.52250 -12.10613 -12.04025 -11.64580 -11.47455 -11.38486 -11.16452 -11.15955 -10.95100 -10.87560 -10.81351 -10.48476 -10.28539 -9.90704 -9.80329 -9.73787 -9.55537 -9.00740 -8.96063 -8.46771 -7.03319 -5.82488 -3.11921 0.51316 0.71890 2.60953 2.99589 3.38862 3.43086 3.44196 3.46037 3.80811 3.87703 4.22020 4.23894 4.44652 4.52623 4.65814 4.74787 4.92544 4.99371 5.10229 5.13351 5.25932 5.28338 5.32204 5.36638 5.44263 5.52193 5.58798 5.72935 5.74440 5.78250 5.86135 5.96854 6.04006 6.09366 6.21799 6.31647 6.39661 6.43195 6.49582 6.59283 6.69371 6.85114 6.98924 7.49795 7.63477 7.71651 8.20768 8.35687 9.46991 10.04160 10.38722 11.40006 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.015660 B = 0.002675 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.620426 B =10462.833506 C =11631.263688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.146 3.854 3 H 0.070 0.930 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.047 0.953 7 N -0.724 5.724 8 C -0.241 4.241 9 H 0.070 0.930 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 C -0.152 4.152 17 C 0.106 3.894 18 N -0.602 5.602 19 C 0.515 3.485 20 O -0.541 6.541 21 C -0.139 4.139 22 C -0.055 4.055 23 C -0.184 4.184 24 C 0.151 3.849 25 N -0.518 5.518 26 C 0.284 3.716 27 N -0.519 5.519 28 C 0.150 3.850 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.169 0.831 45 H 0.195 0.805 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.725 1.670 20.823 22.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 H 0.088 0.912 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.065 0.935 7 N -0.364 5.364 8 C -0.372 4.372 9 H 0.088 0.912 10 C -0.209 4.209 11 N -0.580 5.580 12 Si 0.737 3.263 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 C -0.193 4.193 17 C -0.017 4.017 18 N -0.336 5.336 19 C 0.303 3.697 20 O -0.420 6.420 21 C -0.179 4.179 22 C -0.094 4.094 23 C -0.188 4.188 24 C -0.015 4.015 25 N -0.231 5.231 26 C -0.003 4.003 27 N -0.232 5.232 28 C -0.016 4.016 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.217 0.783 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.186 0.814 45 H 0.211 0.789 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -8.810 1.335 21.485 23.260 hybrid contribution 0.827 0.236 -1.291 1.551 sum -7.983 1.571 20.194 21.772 Atomic orbital electron populations 1.22181 0.92895 1.03372 1.00788 1.21305 0.95372 0.95136 0.83832 0.91222 1.22296 0.97546 1.00919 0.96600 1.20157 0.90923 0.94947 0.87108 0.93482 1.42428 1.12954 1.54225 1.26790 1.19220 0.89124 1.22243 1.06611 0.91187 1.24755 0.98169 0.99804 0.98156 1.69662 1.35370 1.33378 1.19582 0.86209 0.84555 0.77672 0.77853 1.21717 1.21758 1.20751 1.22685 1.01751 1.00017 0.94835 1.21880 0.79545 1.00605 0.99657 1.48250 1.07661 1.57434 1.20226 1.20452 0.86020 0.79947 0.83263 1.90735 1.17195 1.57064 1.76973 1.21744 0.99430 1.01197 0.95506 1.20216 0.97075 0.99901 0.92240 1.21766 1.01971 0.96620 0.98465 1.23251 0.91066 0.90669 0.96492 1.68450 1.11262 1.41928 1.01433 1.24987 0.92048 0.88360 0.94924 1.68439 1.15976 1.07677 1.31140 1.23210 0.89838 1.00860 0.87735 0.90671 0.93819 0.91920 0.90629 0.91836 0.78261 0.93459 0.92188 0.90648 0.90511 0.91392 0.88695 0.88970 0.89464 0.89401 0.81428 0.78852 0.81530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 7.61 37.16 0.28 -1.53 16 2 C 0.15 1.99 3.49 -67.61 -0.24 1.75 16 3 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.13 -2.14 4.84 -26.61 -0.13 -2.27 16 5 C 0.18 3.28 2.73 -67.89 -0.19 3.09 16 6 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 7 N -0.72 -17.31 5.12 -53.39 -0.27 -17.59 16 8 C -0.24 -6.42 9.93 -15.06 -0.15 -6.57 16 9 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 10 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 11 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 12 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 16 C -0.15 -2.37 5.66 -26.61 -0.15 -2.52 16 17 C 0.11 1.24 6.35 -3.71 -0.02 1.21 16 18 N -0.60 -7.49 2.97 -165.22 -0.49 -7.98 16 19 C 0.51 6.06 7.50 -10.99 -0.08 5.98 16 20 O -0.54 -7.59 11.55 5.56 0.06 -7.53 16 21 C -0.14 -1.14 4.04 -27.88 -0.11 -1.26 16 22 C -0.06 -0.41 4.68 -27.88 -0.13 -0.54 16 23 C -0.18 -1.40 5.17 -104.35 -0.54 -1.94 16 24 C 0.15 1.26 11.01 -17.20 -0.19 1.07 16 25 N -0.52 -5.01 10.44 -14.58 -0.15 -5.16 16 26 C 0.28 2.48 12.29 -92.16 -1.13 1.35 16 27 N -0.52 -4.84 10.44 -14.58 -0.15 -4.99 16 28 C 0.15 1.17 11.01 -17.20 -0.19 0.98 16 29 H 0.07 1.05 6.54 -51.93 -0.34 0.71 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.92 6.96 -51.93 -0.36 0.56 16 32 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.38 9.92 7.80 -40.82 -0.32 9.60 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.08 0.71 5.93 -51.93 -0.31 0.40 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.09 0.76 7.93 -51.93 -0.41 0.34 16 41 H 0.09 0.63 7.71 -51.93 -0.40 0.23 16 42 H 0.09 0.65 8.06 -51.93 -0.42 0.23 16 43 H 0.09 0.70 8.06 -51.93 -0.42 0.28 16 44 H 0.17 1.07 8.06 -52.49 -0.42 0.64 16 45 H 0.19 1.12 8.06 -52.49 -0.42 0.69 16 46 H 0.17 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 370.62 15.07 5.59 5.59 Total: -1.00 -32.01 370.62 -9.95 -41.96 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.17 Total: 7.39 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -3.06 Total: -1.63 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: -0.34 Total: -62.59 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.06 Total: -7.53 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.01 -9.95 -41.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044683081.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.438 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds