Wall clock time and date at job start Tue Mar 31 2020 04:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35321 * 126.12598 * 2 1 4 4 C 1.39866 * 107.91794 * 180.26159 * 3 2 1 5 5 N 1.30842 * 108.20367 * 359.73872 * 4 3 2 6 6 N 1.34949 * 126.12714 * 179.81119 * 2 1 3 7 7 C 1.46496 * 126.03577 * 0.02562 * 6 2 1 8 8 C 1.50709 * 109.47098 * 269.71212 * 7 6 2 9 9 O 1.21280 * 119.99916 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00084 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99930 * 180.02562 * 10 8 7 12 12 H 1.09004 * 112.95076 * 336.40754 * 11 10 8 13 13 C 1.53955 * 113.66234 * 107.81356 * 11 10 8 14 14 C 1.53957 * 87.29400 * 89.74137 * 13 11 10 15 15 H 1.09002 * 113.65635 * 270.26077 * 14 13 11 16 16 N 1.46493 * 113.66200 * 139.20574 * 14 13 11 17 17 C 1.36935 * 119.99854 * 107.81212 * 16 14 13 18 18 H 1.07998 * 120.00548 * 0.02562 * 17 16 14 19 19 C 1.38815 * 119.99685 * 179.97438 * 17 16 14 20 20 N 1.31618 * 120.00127 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99751 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47195 * 60.00176 * 21 19 17 23 23 H 1.48509 * 109.47217 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47354 * 299.99723 * 21 19 17 25 25 C 1.52904 * 86.78379 * 24.73199 * 14 13 11 26 26 C 1.52910 * 121.13510 * 209.38616 * 25 14 13 27 27 C 1.53957 * 86.78122 * 209.38051 * 26 25 14 28 28 C 1.52909 * 121.13701 * 100.82200 * 25 14 13 29 29 H 1.09003 * 109.46814 * 270.18421 * 1 2 3 30 30 H 1.08994 * 109.46612 * 30.18789 * 1 2 3 31 31 H 1.08998 * 109.46815 * 150.18775 * 1 2 3 32 32 H 1.08000 * 126.03666 * 359.97438 * 3 2 1 33 33 H 1.08000 * 125.90124 * 179.71239 * 4 3 2 34 34 H 1.08998 * 109.47411 * 149.71953 * 7 6 2 35 35 H 1.09001 * 109.47693 * 29.71213 * 7 6 2 36 36 H 0.96996 * 119.99770 * 0.02562 * 10 8 7 37 37 H 1.08997 * 113.57526 * 204.34081 * 13 11 10 38 38 H 1.08998 * 113.58201 * 335.13936 * 13 11 10 39 39 H 0.97002 * 120.00012 * 287.81346 * 16 14 13 40 40 H 0.97007 * 119.99662 * 179.97438 * 20 19 17 41 41 H 1.09003 * 113.66688 * 94.91189 * 26 25 14 42 42 H 1.08997 * 113.66384 * 323.85427 * 26 25 14 43 43 H 1.08998 * 113.57948 * 139.33169 * 27 26 25 44 44 H 1.09000 * 113.57875 * 270.12813 * 27 26 25 45 45 H 1.08993 * 113.65927 * 36.14497 * 28 25 14 46 46 H 1.08999 * 113.66533 * 265.08675 * 28 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3049 1.0930 0.0000 4 6 3.6335 0.6560 -0.0061 5 7 3.6334 -0.6524 -0.0039 6 7 2.3027 -1.0900 0.0036 7 6 1.8540 -2.4845 0.0077 8 6 1.7064 -2.9606 1.4299 9 8 1.9514 -2.2089 2.3496 10 7 1.3021 -4.2218 1.6799 11 6 1.1581 -4.6843 3.0625 12 1 1.7652 -4.1152 3.7665 13 6 -0.3058 -4.8563 3.5072 14 6 -0.2149 -6.3051 2.9943 15 1 -0.4937 -6.4164 1.9464 16 7 -0.8731 -7.2802 3.8672 17 6 -2.0505 -7.8616 3.4789 18 1 -2.4937 -7.6017 2.5290 19 6 -2.6739 -8.7860 4.3058 20 7 -2.1331 -9.1039 5.4629 21 14 -4.2805 -9.5786 3.7765 22 1 -4.0727 -10.3174 2.5052 23 1 -4.7375 -10.5218 4.8286 24 1 -5.3089 -8.5264 3.5752 25 6 1.2937 -6.1993 3.2200 26 6 2.2789 -6.9980 2.3658 27 6 3.2119 -6.9913 3.5905 28 6 1.9527 -6.8097 4.4575 29 1 -0.3633 0.0033 1.0277 30 1 -0.3632 0.8883 -0.5167 31 1 -0.3633 -0.8917 -0.5109 32 1 1.9741 2.1211 -0.0004 33 1 4.5084 1.2891 -0.0120 34 1 2.5876 -3.1038 -0.5084 35 1 0.8932 -2.5587 -0.5018 36 1 1.1065 -4.8231 0.9444 37 1 -0.4451 -4.7836 4.5858 38 1 -1.0073 -4.2385 2.9466 39 1 -0.4749 -7.5139 4.7202 40 1 -2.5690 -9.7496 6.0409 41 1 2.6707 -6.4416 1.5143 42 1 1.9188 -7.9906 2.0956 43 1 3.7215 -7.9405 3.7555 44 1 3.8879 -6.1367 3.6189 45 1 1.5009 -7.7493 4.7750 46 1 2.0840 -6.1029 5.2768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078736721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:33:54 Heat of formation + Delta-G solvation = 102.071620 kcal Electronic energy + Delta-G solvation = -26809.621777 eV Core-core repulsion = 23123.995054 eV Total energy + Delta-G solvation = -3685.626722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.46185 -40.65776 -38.93100 -35.13931 -34.16304 -33.67337 -32.45524 -32.08581 -29.92274 -27.67791 -27.10253 -25.52623 -24.72305 -24.09971 -22.56494 -21.47539 -21.04295 -20.25886 -19.79071 -18.12777 -17.51169 -17.21538 -16.76210 -15.87824 -15.44401 -15.30771 -15.15885 -14.71362 -14.35551 -14.15878 -13.95069 -13.74937 -13.43947 -13.12099 -12.94279 -12.73103 -12.61783 -12.47914 -12.24214 -12.06093 -11.87840 -11.69961 -11.43323 -10.96900 -10.88218 -10.74576 -10.71251 -10.29581 -10.25012 -10.16451 -9.90819 -9.73906 -9.42742 -9.32126 -8.88532 -8.84052 -8.62234 -7.01616 -5.84235 -3.12983 1.65737 2.18743 2.42285 2.74475 3.10730 3.38441 3.43319 3.44400 4.27452 4.42881 4.48948 4.53091 4.66959 4.69794 4.84010 4.92060 4.95479 5.00372 5.16626 5.20007 5.26238 5.38760 5.50684 5.56445 5.60242 5.60906 5.77473 5.87539 5.96416 5.99876 6.00135 6.06777 6.14998 6.17969 6.30886 6.36879 6.41361 6.51761 6.55817 6.73750 6.79000 6.88765 6.98749 7.42951 7.58418 7.62313 8.08609 8.34433 9.45873 10.03499 10.38097 11.37944 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.018693 B = 0.002914 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.521326 B = 9606.992328 C =10614.332348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.095 3.905 3 C -0.277 4.277 4 C 0.049 3.951 5 N -0.290 5.290 6 N -0.355 5.355 7 C 0.112 3.888 8 C 0.497 3.503 9 O -0.522 6.522 10 N -0.700 5.700 11 C 0.143 3.857 12 H 0.095 0.905 13 C -0.174 4.174 14 C 0.181 3.819 15 H 0.075 0.925 16 N -0.708 5.708 17 C -0.246 4.246 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.126 4.126 26 C -0.122 4.122 27 C -0.140 4.140 28 C -0.105 4.105 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.146 0.854 33 H 0.182 0.818 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.402 0.598 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.058 0.942 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.098 0.902 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.017 14.659 -12.707 21.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.031 4.031 3 C -0.306 4.306 4 C -0.138 4.138 5 N -0.110 5.110 6 N -0.138 5.138 7 C -0.014 4.014 8 C 0.281 3.719 9 O -0.397 6.397 10 N -0.351 5.351 11 C 0.038 3.962 12 H 0.113 0.887 13 C -0.217 4.217 14 C 0.069 3.931 15 H 0.092 0.908 16 N -0.346 5.346 17 C -0.377 4.377 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.579 5.579 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.128 4.128 26 C -0.160 4.160 27 C -0.178 4.178 28 C -0.143 4.143 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.164 0.836 33 H 0.199 0.801 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.236 0.764 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.222 0.778 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.116 0.884 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.691 13.905 -12.092 20.820 hybrid contribution -1.365 -0.093 -0.205 1.384 sum 8.325 13.812 -12.297 20.281 Atomic orbital electron populations 1.20492 0.87406 1.03635 1.03795 1.21088 0.94659 0.87239 1.00162 1.21183 0.92341 0.98804 1.18277 1.23808 0.98132 0.92158 0.99683 1.77371 0.96144 1.13206 1.24289 1.47901 1.04137 1.04376 1.57350 1.21449 1.03373 0.80453 0.96089 1.20704 0.77576 0.82525 0.91136 1.90768 1.48848 1.54345 1.45762 1.45534 1.67976 1.12484 1.09085 1.21538 0.98837 0.93699 0.82127 0.88652 1.24306 0.93874 1.01528 1.01947 1.21376 0.88909 0.88210 0.94637 0.90756 1.42359 1.24779 1.46950 1.20492 1.19229 0.98465 1.17846 1.02169 0.91235 1.24753 0.99186 1.00015 0.96743 1.69643 1.40347 1.36978 1.10921 0.86282 0.83594 0.78990 0.77370 1.21258 1.21674 1.21251 1.23450 0.97642 0.93058 0.98686 1.22631 0.96603 1.00555 0.96187 1.22829 0.96512 1.01181 0.97274 1.22466 0.95102 1.01598 0.95085 0.89817 0.89525 0.91254 0.83621 0.80079 0.85767 0.86032 0.76373 0.89554 0.92343 0.77765 0.93345 0.92338 0.89572 0.91839 0.90997 0.88376 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.73 10.12 36.01 0.36 -0.37 16 2 C 0.10 1.05 6.93 -82.26 -0.57 0.48 16 3 C -0.28 -2.94 10.72 -40.01 -0.43 -3.37 16 4 C 0.05 0.55 12.03 -17.36 -0.21 0.34 16 5 N -0.29 -3.98 12.58 30.62 0.39 -3.60 16 6 N -0.36 -4.33 3.10 -58.31 -0.18 -4.51 16 7 C 0.11 1.06 6.73 -5.19 -0.03 1.02 16 8 C 0.50 6.38 7.90 -10.98 -0.09 6.29 16 9 O -0.52 -9.21 16.03 5.56 0.09 -9.12 16 10 N -0.70 -8.24 4.80 -53.36 -0.26 -8.49 16 11 C 0.14 2.11 4.12 -67.48 -0.28 1.83 16 12 H 0.10 1.57 7.47 -51.93 -0.39 1.18 16 13 C -0.17 -2.96 7.68 -25.74 -0.20 -3.16 16 14 C 0.18 3.30 4.27 -67.48 -0.29 3.02 16 15 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 16 N -0.71 -16.68 5.30 -52.99 -0.28 -16.96 16 17 C -0.25 -6.51 9.97 -15.06 -0.15 -6.66 16 18 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.25 13.06 55.49 0.72 -26.52 16 21 Si 0.91 21.71 29.55 -169.99 -5.02 16.68 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 C -0.13 -1.92 0.92 -154.71 -0.14 -2.06 16 26 C -0.12 -1.66 7.62 -26.28 -0.20 -1.86 16 27 C -0.14 -1.89 8.08 -25.74 -0.21 -2.10 16 28 C -0.10 -1.65 7.15 -26.28 -0.19 -1.83 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.44 7.08 -51.93 -0.37 0.07 16 32 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.12 0.72 7.04 -51.93 -0.37 0.35 16 36 H 0.40 3.68 8.42 -40.82 -0.34 3.34 16 37 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.39 9.72 6.23 -40.82 -0.25 9.47 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.06 0.68 7.58 -51.93 -0.39 0.29 16 42 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.10 1.77 7.03 -51.93 -0.36 1.40 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 379.95 15.07 5.73 5.73 Total: -1.00 -34.36 379.95 -8.63 -42.99 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -7.09 Total: 12.63 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -2.71 Total: -8.83 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.39 Total: -60.08 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.36 -8.63 -42.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078736721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.058 kcal (2) G-P(sol) polarization free energy of solvation -34.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds