Wall clock time and date at job start Tue Mar 31 2020 04:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86804 * 119.99892 * 2 1 4 4 H 1.48501 * 109.47060 * 239.99876 * 3 2 1 5 5 H 1.48498 * 109.47184 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47150 * 120.00431 * 3 2 1 7 7 C 1.38816 * 120.00114 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99952 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99701 * 359.97438 * 7 2 1 10 10 C 1.46494 * 119.99621 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.91148 * 23.75323 * 10 9 7 12 12 C 1.53786 * 113.61370 * 155.00092 * 10 9 7 13 13 C 1.53781 * 87.17350 * 140.02367 * 12 10 9 14 14 H 1.08999 * 113.61567 * 89.07405 * 13 12 10 15 15 C 1.52995 * 113.61503 * 219.89414 * 13 12 10 16 16 N 1.46505 * 109.47283 * 185.00012 * 15 13 12 17 17 C 1.34772 * 119.99813 * 180.02562 * 16 15 13 18 18 O 1.21596 * 120.00290 * 359.97438 * 17 16 15 19 19 C 1.47437 * 119.99574 * 180.02562 * 17 16 15 20 20 C 1.41290 * 126.41350 * 0.02562 * 19 17 16 21 21 N 1.30445 * 108.02111 * 179.97438 * 20 19 17 22 22 N 1.39941 * 108.89639 * 0.02562 * 21 20 19 23 23 C 1.46508 * 125.75392 * 180.02562 * 22 21 20 24 24 C 1.53000 * 109.47053 * 304.97779 * 23 22 21 25 25 C 1.53001 * 117.49484 * 243.74448 * 24 23 22 26 26 C 1.52991 * 117.49685 * 175.08879 * 24 23 22 27 27 C 1.34255 * 108.49382 * 359.74888 * 22 21 20 28 28 C 1.53781 * 87.08070 * 334.52830 * 13 12 10 29 29 H 0.97002 * 120.00116 * 359.97438 * 1 2 3 30 30 H 0.97000 * 119.99842 * 0.02562 * 9 7 2 31 31 H 1.09002 * 113.61357 * 25.43283 * 12 10 9 32 32 H 1.09002 * 113.61608 * 254.61445 * 12 10 9 33 33 H 1.09000 * 109.47188 * 305.00387 * 15 13 12 34 34 H 1.09001 * 109.47254 * 65.00150 * 15 13 12 35 35 H 0.97001 * 119.99791 * 0.02562 * 16 15 13 36 36 H 1.07994 * 125.99104 * 359.97438 * 20 19 17 37 37 H 1.09005 * 109.46813 * 64.97426 * 23 22 21 38 38 H 1.08994 * 109.46833 * 184.97092 * 23 22 21 39 39 H 1.09003 * 115.54940 * 29.41351 * 24 23 22 40 40 H 1.08998 * 117.49949 * 0.02562 * 25 24 23 41 41 H 1.09001 * 117.49714 * 145.01577 * 25 24 23 42 42 H 1.09005 * 117.50097 * 214.97586 * 26 24 23 43 43 H 1.09004 * 117.50344 * 359.97262 * 26 24 23 44 44 H 1.07995 * 126.29517 * 180.24969 * 27 22 21 45 45 H 1.09005 * 113.61471 * 139.98321 * 28 13 12 46 46 H 1.08996 * 113.61178 * 270.79663 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6567 -0.0005 11 1 3.0660 -3.5647 0.4039 12 6 1.2601 -4.8288 0.5949 13 6 1.8476 -5.6998 -0.5280 14 1 2.7982 -6.1653 -0.2676 15 6 0.8449 -6.6898 -1.1240 16 7 1.5259 -7.5496 -2.0953 17 6 0.8358 -8.5036 -2.7511 18 8 -0.3520 -8.6510 -2.5363 19 6 1.5213 -9.3692 -3.7281 20 6 2.8888 -9.3179 -4.0796 21 7 3.1106 -10.2418 -4.9734 22 7 1.9132 -10.9179 -5.2331 23 6 1.7428 -12.0253 -6.1771 24 6 2.2369 -11.5969 -7.5603 25 6 1.2073 -11.5355 -8.6904 26 6 2.2502 -12.6555 -8.6647 27 6 0.9483 -10.3848 -4.4669 28 6 1.9987 -4.4059 -1.3453 29 1 -0.4850 0.8401 0.0004 30 1 0.3555 -2.3880 -0.0005 31 1 0.1797 -4.7002 0.5280 32 1 1.5906 -5.1203 1.5919 33 1 0.4234 -7.3037 -0.3280 34 1 0.0452 -6.1416 -1.6220 35 1 2.4734 -7.4322 -2.2664 36 1 3.6219 -8.6338 -3.6787 37 1 2.3188 -12.8855 -5.8359 38 1 0.6881 -12.2941 -6.2351 39 1 3.0347 -10.8542 -7.5653 40 1 0.1779 -11.7998 -8.4483 41 1 1.3279 -10.7525 -9.4391 42 1 3.0566 -12.6092 -9.3967 43 1 1.9074 -13.6574 -8.4059 44 1 -0.0864 -10.6925 -4.4357 45 1 2.9267 -4.3551 -1.9148 46 1 1.1209 -4.1626 -1.9438 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086246749.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:55 Heat of formation + Delta-G solvation = 93.135969 kcal Electronic energy + Delta-G solvation = -24944.169468 eV Core-core repulsion = 21258.155266 eV Total energy + Delta-G solvation = -3686.014201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.67154 -39.40961 -38.31369 -37.97383 -34.60510 -33.47039 -33.08877 -30.74114 -30.17012 -28.21084 -26.76658 -25.03546 -23.94440 -23.00104 -22.79230 -22.13329 -21.01533 -20.75747 -20.05326 -19.03181 -18.19228 -17.01964 -16.58873 -16.03492 -15.90355 -15.54303 -15.13565 -14.94780 -14.66623 -14.60911 -14.23499 -13.80498 -13.58638 -13.42159 -13.10097 -13.06215 -12.84416 -12.29181 -12.12273 -11.85130 -11.76303 -11.35707 -11.34169 -11.18772 -11.06533 -10.80184 -10.70096 -10.49860 -10.19025 -10.13436 -9.90454 -9.80652 -9.78457 -9.45068 -9.10083 -8.84590 -8.77268 -6.93572 -5.75881 -3.04579 1.28566 1.91452 1.95448 3.15061 3.31408 3.43929 3.44879 3.49251 3.50394 3.79260 4.18721 4.29877 4.37960 4.45355 4.56835 4.60511 4.76402 4.84788 4.91783 5.03309 5.05689 5.07972 5.17948 5.27981 5.30628 5.46852 5.49592 5.51213 5.57750 5.59800 5.88376 5.91192 5.99196 6.11399 6.12948 6.32302 6.36874 6.41424 6.47177 6.54573 6.64409 6.87680 7.15707 7.21771 7.60882 7.70805 8.32218 8.42753 9.53647 10.12521 10.46638 11.46418 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.022256 B = 0.001840 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.804296 B =15210.221240 C =15764.887626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.712 5.712 10 C 0.165 3.835 11 H 0.075 0.925 12 C -0.142 4.142 13 C -0.127 4.127 14 H 0.088 0.912 15 C 0.134 3.866 16 N -0.721 5.721 17 C 0.591 3.409 18 O -0.554 6.554 19 C -0.290 4.290 20 C 0.082 3.918 21 N -0.295 5.295 22 N -0.359 5.359 23 C 0.162 3.838 24 C -0.173 4.173 25 C -0.177 4.177 26 C -0.168 4.168 27 C 0.127 3.873 28 C -0.161 4.161 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.398 0.602 36 H 0.190 0.810 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.187 0.813 45 H 0.053 0.947 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.799 -28.428 -13.513 31.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.350 5.350 10 C 0.053 3.947 11 H 0.093 0.907 12 C -0.182 4.182 13 C -0.146 4.146 14 H 0.106 0.894 15 C 0.011 3.989 16 N -0.371 5.371 17 C 0.379 3.621 18 O -0.433 6.433 19 C -0.305 4.305 20 C -0.106 4.106 21 N -0.114 5.114 22 N -0.138 5.138 23 C 0.042 3.958 24 C -0.191 4.191 25 C -0.214 4.214 26 C -0.206 4.206 27 C -0.024 4.024 28 C -0.202 4.202 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.232 0.768 36 H 0.207 0.793 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.137 0.863 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.117 0.883 44 H 0.204 0.796 45 H 0.072 0.928 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.907 -28.994 -14.179 32.646 hybrid contribution 0.018 1.368 0.330 1.407 sum 4.924 -27.627 -13.849 31.293 Atomic orbital electron populations 1.69649 1.05130 1.25830 1.57409 1.24767 0.95517 0.97767 1.02869 0.86267 0.78527 0.83544 0.77829 1.21268 1.21705 1.21256 1.19267 0.91043 0.84286 1.42996 0.91150 1.42400 1.05764 0.99877 1.86981 1.21571 0.95285 0.85021 0.92813 0.90684 1.23445 1.01045 0.97004 0.96703 1.22631 0.98409 0.94396 0.99182 0.89386 1.21421 0.95255 0.91412 0.90790 1.45801 1.13133 1.35138 1.43021 1.17228 0.85925 0.79412 0.79561 1.90769 1.15153 1.71078 1.66349 1.20312 0.94773 1.05876 1.09569 1.24099 0.95371 0.96562 0.94597 1.77142 1.04355 1.10230 1.19696 1.48479 1.06272 1.27518 1.31487 1.21398 1.02598 0.86015 0.85815 1.22558 1.03399 1.03995 0.89180 1.23141 0.95520 1.01641 1.01120 1.22991 1.02195 0.94695 1.00712 1.22974 0.95538 0.93108 0.90788 1.23990 1.01347 0.94973 0.99883 0.93421 0.78059 0.90118 0.92052 0.91757 0.91210 0.76766 0.79301 0.88821 0.88118 0.86252 0.88397 0.88384 0.88194 0.88344 0.79605 0.92803 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 2 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.79 9.97 -15.06 -0.15 -6.94 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -17.84 5.41 -52.50 -0.28 -18.13 16 10 C 0.17 3.20 4.49 -66.98 -0.30 2.89 16 11 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 12 C -0.14 -2.27 7.38 -25.92 -0.19 -2.46 16 13 C -0.13 -1.69 3.75 -89.81 -0.34 -2.03 16 14 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 15 C 0.13 1.79 5.51 -4.04 -0.02 1.77 16 16 N -0.72 -8.45 5.55 -61.38 -0.34 -8.79 16 17 C 0.59 7.91 7.81 -12.52 -0.10 7.81 16 18 O -0.55 -9.42 16.90 5.28 0.09 -9.33 16 19 C -0.29 -3.17 6.13 -105.06 -0.64 -3.82 16 20 C 0.08 0.77 11.50 -16.98 -0.20 0.58 16 21 N -0.29 -3.01 12.14 30.86 0.37 -2.64 16 22 N -0.36 -3.05 3.65 -60.80 -0.22 -3.28 16 23 C 0.16 0.85 6.77 -4.04 -0.03 0.82 16 24 C -0.17 -0.97 5.92 -90.62 -0.54 -1.51 16 25 C -0.18 -0.84 10.18 -26.70 -0.27 -1.11 16 26 C -0.17 -0.67 10.25 -26.70 -0.27 -0.95 16 27 C 0.13 1.18 11.25 -16.56 -0.19 0.99 16 28 C -0.16 -2.66 7.45 -25.78 -0.19 -2.85 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.39 10.29 7.92 -40.82 -0.32 9.97 16 31 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.07 7.85 -51.93 -0.41 0.66 16 35 H 0.40 3.61 7.43 -40.82 -0.30 3.31 16 36 H 0.19 1.22 7.50 -52.49 -0.39 0.83 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.10 0.29 7.80 -51.93 -0.40 -0.11 16 39 H 0.12 0.92 7.90 -51.93 -0.41 0.51 16 40 H 0.10 0.38 8.03 -51.93 -0.42 -0.04 16 41 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.19 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.08 1.44 7.90 -51.93 -0.41 1.03 16 LS Contribution 389.29 15.07 5.87 5.87 Total: -1.00 -34.60 389.29 -9.60 -44.20 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -7.26 Total: 9.55 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -3.52 Total: -7.27 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.25 Total: -60.39 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.60 -9.60 -44.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086246749.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.332 kcal (2) G-P(sol) polarization free energy of solvation -34.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds