Wall clock time and date at job start Tue Mar 31 2020 05:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.87337 * 2 1 4 4 C 1.54329 * 109.88268 * 238.98459 * 2 1 3 5 5 H 1.09004 * 110.72150 * 336.92822 * 4 2 1 6 6 N 1.46498 * 110.72103 * 100.02347 * 4 2 1 7 7 C 1.34777 * 120.00102 * 204.99804 * 6 4 2 8 8 O 1.21277 * 120.00038 * 0.02562 * 7 6 4 9 9 C 1.50697 * 120.00072 * 180.02562 * 7 6 4 10 10 H 1.09003 * 109.42853 * 299.90038 * 9 7 6 11 11 C 1.53028 * 109.43189 * 180.02562 * 9 7 6 12 12 C 1.53370 * 109.74691 * 168.19596 * 11 9 7 13 13 C 1.50945 * 108.20846 * 50.65114 * 12 11 9 14 14 N 1.30131 * 128.28698 * 163.36977 * 13 12 11 15 15 N 1.40308 * 108.12041 * 180.11621 * 14 13 12 16 16 H 0.97000 * 126.00521 * 179.97438 * 15 14 13 17 17 C 1.35204 * 107.99456 * 359.95831 * 15 14 13 18 18 C 1.34568 * 107.61637 * 359.96175 * 17 15 14 19 19 C 1.50880 * 128.32119 * 180.30522 * 18 17 15 20 20 C 1.55152 * 102.94030 * 218.38890 * 4 2 1 21 21 C 1.54907 * 101.58465 * 35.50148 * 20 4 2 22 22 N 1.47015 * 109.88381 * 121.17404 * 2 1 3 23 23 C 1.36938 * 125.65153 * 298.31562 * 22 2 1 24 24 H 1.08003 * 119.99830 * 341.48384 * 23 22 2 25 25 C 1.38809 * 120.00349 * 161.49109 * 23 22 2 26 26 N 1.31616 * 120.00043 * 157.62717 * 25 23 22 27 27 Si 1.86796 * 119.99895 * 337.62378 * 25 23 22 28 28 H 1.48503 * 109.47015 * 84.54235 * 27 25 23 29 29 H 1.48502 * 109.47274 * 204.54324 * 27 25 23 30 30 H 1.48505 * 109.47384 * 324.54385 * 27 25 23 31 31 H 1.08998 * 109.46606 * 181.01694 * 1 2 3 32 32 H 1.08998 * 109.46738 * 61.01671 * 1 2 3 33 33 H 1.08992 * 109.46980 * 301.01518 * 1 2 3 34 34 H 0.97004 * 119.99816 * 25.00084 * 6 4 2 35 35 H 1.09000 * 109.42039 * 288.28038 * 11 9 7 36 36 H 1.08997 * 109.42639 * 48.10482 * 11 9 7 37 37 H 1.09003 * 109.71217 * 170.32482 * 12 11 9 38 38 H 1.09006 * 109.71425 * 290.96553 * 12 11 9 39 39 H 1.08006 * 126.18473 * 179.97438 * 17 15 14 40 40 H 1.09001 * 109.72403 * 43.56174 * 19 18 17 41 41 H 1.08996 * 109.72080 * 282.90791 * 19 18 17 42 42 H 1.09003 * 111.00742 * 153.57500 * 20 4 2 43 43 H 1.09007 * 111.00526 * 277.42495 * 20 4 2 44 44 H 1.09005 * 110.36752 * 81.82842 * 21 20 4 45 45 H 1.09007 * 110.37063 * 204.04016 * 21 20 4 46 46 H 0.97003 * 119.99979 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2438 5 1 1.3040 -1.4415 -1.6222 6 7 2.4555 0.1992 -2.2873 7 6 2.4582 -0.1834 -3.5796 8 8 2.1286 -1.3116 -3.8787 9 6 2.8708 0.7906 -4.6529 10 1 2.2041 1.6528 -4.6359 11 6 2.7848 0.1082 -6.0200 12 6 2.9137 1.1570 -7.1316 13 6 4.1354 1.9970 -6.8483 14 7 4.7776 2.7856 -7.6600 15 7 5.8501 3.3555 -6.9574 16 1 6.4974 3.9829 -7.3156 17 6 5.8228 2.8768 -5.6933 18 6 4.7748 2.0380 -5.5980 19 6 4.3101 1.2542 -4.3954 20 6 3.2876 -1.5132 -0.6945 21 6 2.8146 -1.8804 0.7341 22 7 2.0301 -0.7156 1.1829 23 6 1.8052 -0.3590 2.4857 24 1 1.4867 0.6453 2.7234 25 6 1.9867 -1.2880 3.5010 26 7 2.2077 -0.8816 4.7331 27 14 1.9171 -3.1150 3.1184 28 1 3.2475 -3.5722 2.6429 29 1 1.5459 -3.8640 4.3458 30 1 0.9025 -3.3614 2.0623 31 1 -0.3632 -1.0275 0.0182 32 1 -0.3633 0.4980 -0.8990 33 1 -0.3633 0.5295 0.8807 34 1 2.7188 1.1017 -2.0481 35 1 3.5908 -0.6197 -6.1130 36 1 1.8254 -0.4009 -6.1113 37 1 3.0249 0.6596 -8.0952 38 1 2.0267 1.7904 -7.1442 39 1 6.5164 3.1232 -4.9030 40 1 4.3392 1.8883 -3.5094 41 1 4.9550 0.3877 -4.2496 42 1 3.4853 -2.4093 -1.2829 43 1 4.1655 -0.8678 -0.6616 44 1 2.1887 -2.7725 0.7090 45 1 3.6718 -2.0376 1.3890 46 1 2.3342 -1.5308 5.4427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088977458.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:12 Heat of formation + Delta-G solvation = 53.238512 kcal Electronic energy + Delta-G solvation = -26939.756184 eV Core-core repulsion = 23252.011899 eV Total energy + Delta-G solvation = -3687.744285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.77881 -39.99286 -38.07372 -36.22938 -34.17178 -32.63541 -31.99947 -30.76748 -30.69688 -29.67009 -28.65411 -25.26855 -24.68942 -23.92775 -22.72185 -21.35859 -21.03450 -20.29445 -19.55746 -18.97559 -17.93735 -17.00279 -16.90036 -16.08909 -15.67427 -15.09036 -15.00979 -14.68474 -14.45370 -14.00592 -13.86150 -13.60025 -13.37862 -13.09218 -13.04051 -12.87069 -12.76845 -12.22604 -12.12233 -11.99314 -11.80522 -11.56589 -11.26690 -11.19293 -11.08891 -10.87264 -10.77922 -10.60609 -10.45461 -10.12024 -9.98462 -9.67701 -9.63268 -9.43157 -8.81842 -8.73063 -8.65060 -7.08824 -5.95568 -3.26384 1.60098 2.43284 2.54774 2.71620 3.24861 3.35938 3.50026 3.52415 4.12514 4.44977 4.54886 4.58614 4.60583 4.81411 4.91103 4.99021 5.14735 5.16926 5.19440 5.25681 5.27546 5.33449 5.41751 5.46290 5.62132 5.66491 5.71487 5.84086 5.86710 5.94212 5.96991 6.05799 6.09197 6.18210 6.32281 6.36304 6.40926 6.48707 6.62931 6.73871 6.81628 6.97494 6.98770 7.37844 7.64125 7.69551 8.29597 8.34152 8.81724 9.67834 10.15451 11.20389 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.025760 B = 0.002779 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.675583 B =10071.977143 C =10431.752537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.046 0.954 4 C 0.133 3.867 5 H 0.097 0.903 6 N -0.715 5.715 7 C 0.518 3.482 8 O -0.541 6.541 9 C -0.104 4.104 10 H 0.099 0.901 11 C -0.096 4.096 12 C -0.040 4.040 13 C 0.085 3.915 14 N -0.292 5.292 15 N -0.486 5.486 16 H 0.439 0.561 17 C 0.064 3.936 18 C -0.234 4.234 19 C -0.031 4.031 20 C -0.140 4.140 21 C 0.111 3.889 22 N -0.601 5.601 23 C -0.238 4.238 24 H 0.092 0.908 25 C 0.023 3.977 26 N -0.909 5.909 27 Si 0.881 3.119 28 H -0.285 1.285 29 H -0.303 1.303 30 H -0.276 1.276 31 H 0.050 0.950 32 H 0.040 0.960 33 H 0.060 0.940 34 H 0.400 0.600 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.178 0.822 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.027 0.973 45 H 0.062 0.938 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.790 7.911 -22.886 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.063 0.937 4 C 0.028 3.972 5 H 0.115 0.885 6 N -0.366 5.366 7 C 0.304 3.696 8 O -0.418 6.418 9 C -0.125 4.125 10 H 0.117 0.883 11 C -0.135 4.135 12 C -0.079 4.079 13 C -0.084 4.084 14 N -0.114 5.114 15 N -0.195 5.195 16 H 0.282 0.718 17 C -0.082 4.082 18 C -0.245 4.245 19 C -0.069 4.069 20 C -0.179 4.179 21 C -0.014 4.014 22 N -0.327 5.327 23 C -0.365 4.365 24 H 0.110 0.890 25 C -0.176 4.176 26 N -0.552 5.552 27 Si 0.711 3.289 28 H -0.212 1.212 29 H -0.231 1.231 30 H -0.201 1.201 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.234 0.766 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.195 0.805 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.045 0.955 45 H 0.080 0.920 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.617 7.556 -23.981 25.763 hybrid contribution 0.502 -0.526 0.833 1.106 sum 6.119 7.030 -23.148 24.954 Atomic orbital electron populations 1.22203 0.97252 1.01561 1.00465 1.21089 0.92859 0.95214 0.86043 0.93663 1.22127 0.96995 0.91140 0.86905 0.88488 1.46057 1.68230 1.16164 1.06102 1.20529 0.77223 0.88542 0.83335 1.90694 1.48017 1.20851 1.82264 1.21357 0.98191 0.98506 0.94480 0.88271 1.21382 1.04180 0.96864 0.91040 1.20188 0.92455 0.95445 0.99789 1.22427 0.97648 0.96562 0.91763 1.77012 1.00072 1.14380 1.19926 1.46331 1.25561 1.39048 1.08522 0.71756 1.22091 0.99838 0.97428 0.88820 1.20001 1.00391 1.07022 0.97126 1.19933 0.93911 0.98613 0.94489 1.23122 0.97661 1.00108 0.97010 1.21955 0.95218 0.91120 0.93128 1.44814 1.57544 1.28874 1.01484 1.18573 1.42508 0.96746 0.78644 0.89007 1.24978 1.00118 0.97660 0.94823 1.69833 1.50818 1.33948 1.00644 0.87012 0.78277 0.87429 0.76148 1.21198 1.23114 1.20139 0.93062 0.94057 0.92056 0.76578 0.90875 0.89691 0.89601 0.89603 0.80538 0.90412 0.90515 0.91322 0.90945 0.95544 0.92003 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.76 9.13 37.16 0.34 -2.42 16 2 C 0.16 2.86 3.48 -66.95 -0.23 2.62 16 3 H 0.05 0.80 7.71 -51.93 -0.40 0.40 16 4 C 0.13 2.15 2.85 -66.10 -0.19 1.96 16 5 H 0.10 1.71 7.25 -51.93 -0.38 1.33 16 6 N -0.72 -8.88 5.08 -52.03 -0.26 -9.14 16 7 C 0.52 6.51 7.14 -10.99 -0.08 6.43 16 8 O -0.54 -8.90 15.41 5.56 0.09 -8.81 16 9 C -0.10 -0.95 2.47 -91.56 -0.23 -1.18 16 10 H 0.10 0.79 8.10 -51.93 -0.42 0.37 16 11 C -0.10 -0.88 4.65 -26.53 -0.12 -1.01 16 12 C -0.04 -0.32 6.31 -27.57 -0.17 -0.50 16 13 C 0.08 0.84 7.10 -82.35 -0.58 0.25 16 14 N -0.29 -3.09 12.68 33.75 0.43 -2.66 16 15 N -0.49 -3.69 7.37 30.35 0.22 -3.47 16 16 H 0.44 1.90 8.96 -182.44 -1.64 0.26 16 17 C 0.06 0.46 11.95 -17.36 -0.21 0.25 16 18 C -0.23 -2.07 5.89 -104.99 -0.62 -2.69 16 19 C -0.03 -0.25 5.40 -27.59 -0.15 -0.40 16 20 C -0.14 -2.38 6.77 -24.59 -0.17 -2.54 16 21 C 0.11 2.38 4.69 -2.53 -0.01 2.37 16 22 N -0.60 -13.88 2.94 -162.56 -0.48 -14.36 16 23 C -0.24 -6.50 10.19 -15.06 -0.15 -6.65 16 24 H 0.09 2.65 8.06 -52.48 -0.42 2.23 16 25 C 0.02 0.65 5.43 -17.43 -0.09 0.56 16 26 N -0.91 -27.63 13.97 55.49 0.78 -26.85 16 27 Si 0.88 22.48 24.27 -169.99 -4.13 18.36 16 28 H -0.28 -7.01 6.49 56.52 0.37 -6.64 16 29 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 30 H -0.28 -6.98 6.66 56.52 0.38 -6.60 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 1.16 8.04 -51.93 -0.42 0.74 16 34 H 0.40 4.00 8.00 -40.82 -0.33 3.68 16 35 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 36 H 0.08 0.82 7.68 -51.93 -0.40 0.43 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.18 0.67 8.06 -52.48 -0.42 0.25 16 40 H 0.08 0.53 7.86 -51.93 -0.41 0.12 16 41 H 0.08 0.69 8.12 -51.93 -0.42 0.26 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.03 0.60 5.58 -51.93 -0.29 0.31 16 45 H 0.06 1.41 6.64 -51.93 -0.34 1.07 16 46 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 360.74 15.07 5.44 5.44 Total: -1.00 -34.51 360.74 -9.03 -43.54 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -8.44 Total: 0.90 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -2.67 Total: -2.94 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: 0.69 Total: -56.49 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.13 Total: 18.36 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.51 -9.03 -43.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088977458.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.777 kcal (2) G-P(sol) polarization free energy of solvation -34.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds