Wall clock time and date at job start Tue Mar 31 2020 05:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.87337 * 2 1 4 4 C 1.54329 * 109.88268 * 238.98459 * 2 1 3 5 5 H 1.09004 * 110.72150 * 336.92822 * 4 2 1 6 6 N 1.46498 * 110.72103 * 100.02347 * 4 2 1 7 7 C 1.34777 * 120.00102 * 204.99804 * 6 4 2 8 8 O 1.21277 * 120.00038 * 0.02562 * 7 6 4 9 9 C 1.50697 * 120.00072 * 180.02562 * 7 6 4 10 10 H 1.09003 * 109.42853 * 299.90038 * 9 7 6 11 11 C 1.53028 * 109.43189 * 180.02562 * 9 7 6 12 12 C 1.53370 * 109.74691 * 168.19596 * 11 9 7 13 13 C 1.50945 * 108.20846 * 50.65114 * 12 11 9 14 14 N 1.30131 * 128.28698 * 163.36977 * 13 12 11 15 15 N 1.40308 * 108.12041 * 180.11621 * 14 13 12 16 16 H 0.97000 * 126.00521 * 179.97438 * 15 14 13 17 17 C 1.35204 * 107.99456 * 359.95831 * 15 14 13 18 18 C 1.34568 * 107.61637 * 359.96175 * 17 15 14 19 19 C 1.50880 * 128.32119 * 180.30522 * 18 17 15 20 20 C 1.55152 * 102.94030 * 218.38890 * 4 2 1 21 21 C 1.54907 * 101.58465 * 35.50148 * 20 4 2 22 22 N 1.47015 * 109.88381 * 121.17404 * 2 1 3 23 23 C 1.36938 * 125.65153 * 298.31562 * 22 2 1 24 24 H 1.08003 * 119.99830 * 341.48384 * 23 22 2 25 25 C 1.38809 * 120.00349 * 161.49109 * 23 22 2 26 26 N 1.31616 * 120.00043 * 157.62717 * 25 23 22 27 27 Si 1.86796 * 119.99895 * 337.62378 * 25 23 22 28 28 H 1.48503 * 109.47015 * 84.54235 * 27 25 23 29 29 H 1.48502 * 109.47274 * 204.54324 * 27 25 23 30 30 H 1.48505 * 109.47384 * 324.54385 * 27 25 23 31 31 H 1.08998 * 109.46606 * 181.01694 * 1 2 3 32 32 H 1.08998 * 109.46738 * 61.01671 * 1 2 3 33 33 H 1.08992 * 109.46980 * 301.01518 * 1 2 3 34 34 H 0.97004 * 119.99816 * 25.00084 * 6 4 2 35 35 H 1.09000 * 109.42039 * 288.28038 * 11 9 7 36 36 H 1.08997 * 109.42639 * 48.10482 * 11 9 7 37 37 H 1.09003 * 109.71217 * 170.32482 * 12 11 9 38 38 H 1.09006 * 109.71425 * 290.96553 * 12 11 9 39 39 H 1.08006 * 126.18473 * 179.97438 * 17 15 14 40 40 H 1.09001 * 109.72403 * 43.56174 * 19 18 17 41 41 H 1.08996 * 109.72080 * 282.90791 * 19 18 17 42 42 H 1.09003 * 111.00742 * 153.57500 * 20 4 2 43 43 H 1.09007 * 111.00526 * 277.42495 * 20 4 2 44 44 H 1.09005 * 110.36752 * 81.82842 * 21 20 4 45 45 H 1.09007 * 110.37063 * 204.04016 * 21 20 4 46 46 H 0.97003 * 119.99979 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2438 5 1 1.3040 -1.4415 -1.6222 6 7 2.4555 0.1992 -2.2873 7 6 2.4582 -0.1834 -3.5796 8 8 2.1286 -1.3116 -3.8787 9 6 2.8708 0.7906 -4.6529 10 1 2.2041 1.6528 -4.6359 11 6 2.7848 0.1082 -6.0200 12 6 2.9137 1.1570 -7.1316 13 6 4.1354 1.9970 -6.8483 14 7 4.7776 2.7856 -7.6600 15 7 5.8501 3.3555 -6.9574 16 1 6.4974 3.9829 -7.3156 17 6 5.8228 2.8768 -5.6933 18 6 4.7748 2.0380 -5.5980 19 6 4.3101 1.2542 -4.3954 20 6 3.2876 -1.5132 -0.6945 21 6 2.8146 -1.8804 0.7341 22 7 2.0301 -0.7156 1.1829 23 6 1.8052 -0.3590 2.4857 24 1 1.4867 0.6453 2.7234 25 6 1.9867 -1.2880 3.5010 26 7 2.2077 -0.8816 4.7331 27 14 1.9171 -3.1150 3.1184 28 1 3.2475 -3.5722 2.6429 29 1 1.5459 -3.8640 4.3458 30 1 0.9025 -3.3614 2.0623 31 1 -0.3632 -1.0275 0.0182 32 1 -0.3633 0.4980 -0.8990 33 1 -0.3633 0.5295 0.8807 34 1 2.7188 1.1017 -2.0481 35 1 3.5908 -0.6197 -6.1130 36 1 1.8254 -0.4009 -6.1113 37 1 3.0249 0.6596 -8.0952 38 1 2.0267 1.7904 -7.1442 39 1 6.5164 3.1232 -4.9030 40 1 4.3392 1.8883 -3.5094 41 1 4.9550 0.3877 -4.2496 42 1 3.4853 -2.4093 -1.2829 43 1 4.1655 -0.8678 -0.6616 44 1 2.1887 -2.7725 0.7090 45 1 3.6718 -2.0376 1.3890 46 1 2.3342 -1.5308 5.4427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088977458.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:11 Heat of formation + Delta-G solvation = 28.576028 kcal Electronic energy + Delta-G solvation = -26940.825630 eV Core-core repulsion = 23252.011899 eV Total energy + Delta-G solvation = -3688.813730 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.39897 -41.08784 -39.49106 -37.03686 -35.58436 -34.07098 -33.12961 -32.21749 -31.44037 -31.11402 -29.58901 -26.54100 -25.83481 -25.48366 -23.68221 -22.52276 -21.90631 -21.47898 -20.84611 -19.70299 -18.81256 -18.50659 -18.00021 -17.46954 -16.92849 -16.39007 -16.10535 -15.73254 -15.52666 -15.22164 -14.98533 -14.71715 -14.48700 -14.40430 -14.19734 -13.95795 -13.72656 -13.66571 -13.42912 -13.18664 -12.90002 -12.81367 -12.68732 -12.55199 -12.42772 -12.08103 -12.02013 -11.92238 -11.79780 -11.56190 -11.46093 -11.23971 -10.79734 -10.67340 -10.30657 -9.95038 -9.32189 -9.05293 -8.15075 -5.40691 1.02646 1.31329 1.40684 1.47820 1.71370 1.81352 2.05763 2.18759 2.43174 3.07058 3.31661 3.47745 3.71022 3.80216 3.82033 3.92973 3.95767 4.16840 4.19944 4.32880 4.36449 4.46583 4.50460 4.57328 4.59051 4.68102 4.77392 4.80884 4.84123 4.85462 4.94246 5.03253 5.05617 5.08647 5.15717 5.20001 5.21343 5.30285 5.38710 5.42065 5.63623 5.73281 5.74771 6.14185 6.52702 6.66337 6.77774 6.78405 7.35274 7.56995 8.12794 9.04659 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.025760 B = 0.002779 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.675583 B =10071.977143 C =10431.752537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.151 3.849 3 H 0.062 0.938 4 C 0.149 3.851 5 H 0.085 0.915 6 N -0.703 5.703 7 C 0.522 3.478 8 O -0.580 6.580 9 C -0.094 4.094 10 H 0.119 0.881 11 C -0.091 4.091 12 C -0.035 4.035 13 C 0.071 3.929 14 N -0.329 5.329 15 N -0.481 5.481 16 H 0.451 0.549 17 C 0.077 3.923 18 C -0.256 4.256 19 C -0.024 4.024 20 C -0.126 4.126 21 C 0.104 3.896 22 N -0.617 5.617 23 C -0.217 4.217 24 H 0.068 0.932 25 C -0.034 4.034 26 N -0.955 5.955 27 Si 0.935 3.065 28 H -0.272 1.272 29 H -0.312 1.312 30 H -0.274 1.274 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.042 0.958 34 H 0.415 0.585 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.213 0.787 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.017 0.983 45 H 0.045 0.955 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.666 8.867 -25.011 27.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.045 3.955 3 H 0.079 0.921 4 C 0.043 3.957 5 H 0.103 0.897 6 N -0.355 5.355 7 C 0.310 3.690 8 O -0.459 6.459 9 C -0.115 4.115 10 H 0.136 0.864 11 C -0.130 4.130 12 C -0.074 4.074 13 C -0.097 4.097 14 N -0.152 5.152 15 N -0.191 5.191 16 H 0.297 0.703 17 C -0.070 4.070 18 C -0.268 4.268 19 C -0.063 4.063 20 C -0.165 4.165 21 C -0.021 4.021 22 N -0.343 5.343 23 C -0.346 4.346 24 H 0.085 0.915 25 C -0.229 4.229 26 N -0.603 5.603 27 Si 0.765 3.235 28 H -0.198 1.198 29 H -0.240 1.240 30 H -0.200 1.200 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.253 0.747 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.229 0.771 40 H 0.115 0.885 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.107 0.893 44 H 0.035 0.965 45 H 0.063 0.937 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.507 8.546 -26.175 28.293 hybrid contribution 0.251 -0.712 1.405 1.595 sum 6.758 7.835 -24.769 26.843 Atomic orbital electron populations 1.22123 0.96636 1.00822 1.01283 1.21290 0.93337 0.95669 0.85244 0.92061 1.21710 0.96161 0.91142 0.86695 0.89660 1.45862 1.67987 1.16281 1.05351 1.21073 0.75988 0.88429 0.83538 1.90689 1.49671 1.22779 1.82776 1.21333 0.99395 0.97957 0.92807 0.86356 1.21303 1.03213 0.96854 0.91603 1.20167 0.92628 0.95180 0.99434 1.22684 0.98079 0.96628 0.92316 1.76945 1.01467 1.15604 1.21203 1.46398 1.25092 1.38881 1.08689 0.70288 1.22648 0.99428 0.95859 0.89066 1.20156 1.01403 1.08240 0.96954 1.19890 0.92663 0.98574 0.95126 1.23033 0.98434 1.01065 0.94010 1.22002 0.94266 0.90307 0.95541 1.44902 1.58404 1.29670 1.01348 1.18518 1.39824 0.95582 0.80681 0.91465 1.25511 1.01442 1.01081 0.94833 1.69942 1.53793 1.34893 1.01648 0.86118 0.78771 0.83214 0.75372 1.19781 1.24040 1.19986 0.94476 0.90668 0.93869 0.74735 0.92197 0.90446 0.89349 0.88471 0.77077 0.88455 0.91318 0.90189 0.89335 0.96491 0.93662 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 9.13 71.98 0.66 -4.39 16 2 C 0.15 5.23 3.48 45.35 0.16 5.39 16 3 H 0.06 1.97 7.71 -2.38 -0.02 1.95 16 4 C 0.15 4.41 2.85 46.18 0.13 4.54 16 5 H 0.09 2.81 7.25 -2.38 -0.02 2.79 16 6 N -0.70 -15.07 5.08 -436.92 -2.22 -17.29 16 7 C 0.52 11.69 7.14 87.66 0.63 12.32 16 8 O -0.58 -17.99 15.41 -3.02 -0.05 -18.04 16 9 C -0.09 -1.45 2.47 -11.40 -0.03 -1.48 16 10 H 0.12 1.45 8.10 -2.39 -0.02 1.43 16 11 C -0.09 -1.53 4.65 30.73 0.14 -1.39 16 12 C -0.04 -0.52 6.31 30.05 0.19 -0.33 16 13 C 0.07 1.27 7.10 43.44 0.31 1.58 16 14 N -0.33 -6.45 12.68 -47.14 -0.60 -7.05 16 15 N -0.48 -6.14 7.37 -57.88 -0.43 -6.57 16 16 H 0.45 2.87 8.96 -213.19 -1.91 0.96 16 17 C 0.08 0.84 11.95 83.33 1.00 1.83 16 18 C -0.26 -3.81 5.89 -20.10 -0.12 -3.93 16 19 C -0.02 -0.32 5.40 30.04 0.16 -0.15 16 20 C -0.13 -3.97 6.77 31.98 0.22 -3.75 16 21 C 0.10 4.32 4.69 86.85 0.41 4.73 16 22 N -0.62 -27.96 2.94 -668.23 -1.96 -29.92 16 23 C -0.22 -11.98 10.19 84.03 0.86 -11.12 16 24 H 0.07 3.97 8.06 -2.91 -0.02 3.95 16 25 C -0.03 -1.99 5.43 84.86 0.46 -1.53 16 26 N -0.96 -59.55 13.97 21.65 0.30 -59.25 16 27 Si 0.94 47.08 24.27 68.60 1.67 48.74 16 28 H -0.27 -12.92 6.49 99.48 0.65 -12.27 16 29 H -0.31 -15.98 7.11 99.48 0.71 -15.27 16 30 H -0.27 -13.54 6.66 99.48 0.66 -12.88 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.04 1.59 8.04 -2.39 -0.02 1.57 16 34 H 0.42 6.55 8.00 -92.71 -0.74 5.81 16 35 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 36 H 0.08 1.41 7.68 -2.39 -0.02 1.40 16 37 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 39 H 0.21 0.64 8.06 -2.91 -0.02 0.62 16 40 H 0.10 0.89 7.86 -2.39 -0.02 0.87 16 41 H 0.07 1.03 8.12 -2.39 -0.02 1.01 16 42 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 44 H 0.02 0.76 5.58 -2.38 -0.01 0.75 16 45 H 0.05 2.02 6.64 -2.38 -0.02 2.00 16 46 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -76.00 360.74 0.13 -75.87 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -1.75 Total: 11.20 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 5.17 Total: 2.31 kcal Atomic # 7 Polarization: -115.17 SS G_CDS: -4.90 Total: -120.07 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.05 Total: -18.04 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.67 Total: 48.74 kcal Total: -76.00 0.13 -75.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088977458.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.443 kcal (2) G-P(sol) polarization free energy of solvation -75.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds