Wall clock time and date at job start Tue Mar 31 2020 05:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 110.99732 * 2 1 4 4 C 1.38443 * 111.00284 * 123.95841 * 2 1 3 5 5 C 1.39495 * 120.95113 * 299.97873 * 4 2 1 6 6 C 1.37779 * 119.21031 * 180.02562 * 5 4 2 7 7 N 1.32182 * 121.22084 * 0.02562 * 6 5 4 8 8 C 1.31635 * 122.11501 * 359.69286 * 7 6 5 9 9 C 1.39528 * 120.62816 * 0.59443 * 8 7 6 10 10 C 1.47454 * 120.63467 * 179.70388 * 9 8 7 11 11 O 1.21598 * 120.00262 * 133.40958 * 10 9 8 12 12 N 1.34775 * 119.99779 * 313.40407 * 10 9 8 13 13 C 1.47079 * 120.88295 * 174.44591 * 12 10 9 14 14 C 1.53242 * 108.52136 * 128.83498 * 13 12 10 15 15 N 1.46900 * 109.33950 * 53.83216 * 14 13 12 16 16 C 1.46899 * 110.99996 * 172.74292 * 15 14 13 17 17 C 1.50698 * 109.47132 * 190.00219 * 16 15 14 18 18 H 1.08005 * 120.00174 * 0.02562 * 17 16 15 19 19 C 1.37878 * 120.00161 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00212 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00030 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47024 * 90.00145 * 21 19 17 23 23 H 1.48501 * 109.47278 * 210.00148 * 21 19 17 24 24 H 1.48498 * 109.46708 * 330.00413 * 21 19 17 25 25 C 1.46894 * 111.26977 * 296.89657 * 15 14 13 26 26 C 1.47086 * 120.88237 * 354.46744 * 12 10 9 27 27 H 1.08998 * 109.47034 * 296.04168 * 1 2 3 28 28 H 1.08998 * 109.47101 * 56.04744 * 1 2 3 29 29 H 1.09000 * 109.46884 * 176.03641 * 1 2 3 30 30 H 1.09005 * 109.46961 * 183.95180 * 3 2 1 31 31 H 1.08999 * 109.47668 * 303.95420 * 3 2 1 32 32 H 1.09001 * 109.46876 * 63.95706 * 3 2 1 33 33 H 1.08005 * 120.39753 * 359.97438 * 5 4 2 34 34 H 1.08003 * 119.38753 * 179.97438 * 6 5 4 35 35 H 1.08002 * 119.68134 * 180.31994 * 8 7 6 36 36 H 1.08997 * 109.62870 * 9.13078 * 13 12 10 37 37 H 1.09003 * 109.63154 * 248.54912 * 13 12 10 38 38 H 1.09003 * 109.49277 * 173.79321 * 14 13 12 39 39 H 1.08997 * 109.49687 * 293.87000 * 14 13 12 40 40 H 1.08997 * 109.47161 * 310.00009 * 16 15 14 41 41 H 1.09002 * 109.47057 * 70.00321 * 16 15 14 42 42 H 0.96993 * 119.99854 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.49260 * 183.06075 * 25 15 14 44 44 H 1.08996 * 109.49357 * 303.14314 * 25 15 14 45 45 H 1.09004 * 109.62375 * 111.45554 * 26 12 10 46 46 H 1.08993 * 109.62773 * 350.87960 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9652 -0.7220 1.0720 5 6 1.6643 -0.3562 2.3841 6 6 2.1778 -1.1000 3.4240 7 7 2.9486 -2.1502 3.2001 8 6 3.2599 -2.5429 1.9828 9 6 2.7898 -1.8462 0.8691 10 6 3.1437 -2.2822 -0.4943 11 8 2.2831 -2.3627 -1.3496 12 7 4.4212 -2.5914 -0.7926 13 6 4.7768 -3.1432 -2.1087 14 6 5.9303 -2.3169 -2.6875 15 7 7.0308 -2.2703 -1.7156 16 6 8.2205 -1.6347 -2.2975 17 6 9.3941 -1.8222 -1.3710 18 1 9.2689 -2.3602 -0.4429 19 6 10.6278 -1.3071 -1.7081 20 7 11.6522 -1.4712 -0.8998 21 14 10.8447 -0.3772 -3.3136 22 1 10.5797 1.0666 -3.0891 23 1 12.2348 -0.5549 -3.8048 24 1 9.8917 -0.9042 -4.3233 25 6 6.6218 -1.5899 -0.4796 26 6 5.4966 -2.3863 0.1897 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5739 -0.8524 29 1 -0.3633 -1.0252 -0.0710 30 1 3.0828 1.3432 -0.0708 31 1 1.5898 1.9164 -0.8524 32 1 1.7043 1.8723 0.9233 33 1 1.0369 0.5002 2.5825 34 1 1.9470 -0.8191 4.4410 35 1 3.8888 -3.4101 1.8451 36 1 3.9157 -3.0863 -2.7745 37 1 5.0896 -4.1815 -1.9981 38 1 6.2801 -2.7778 -3.6113 39 1 5.5844 -1.3042 -2.8941 40 1 8.4420 -2.0923 -3.2616 41 1 8.0329 -0.5698 -2.4352 42 1 12.5202 -1.1091 -1.1371 43 1 7.4730 -1.5236 0.1979 44 1 6.2662 -0.5873 -0.7169 45 1 5.8786 -3.3519 0.5212 46 1 5.1113 -1.8292 1.0435 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:08 Heat of formation + Delta-G solvation = 41.619166 kcal Electronic energy + Delta-G solvation = -27498.085107 eV Core-core repulsion = 23809.836970 eV Total energy + Delta-G solvation = -3688.248137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.17563 -39.44285 -37.73364 -37.39972 -34.47902 -32.59452 -31.97552 -31.37140 -30.56753 -28.71593 -27.94128 -26.09916 -25.46219 -24.31486 -23.40606 -21.92441 -21.65125 -20.63374 -19.07813 -17.57569 -17.38584 -16.89931 -16.84256 -15.98019 -15.43750 -14.98855 -14.85600 -14.81957 -14.59306 -14.53978 -14.24704 -13.92848 -13.83605 -13.59387 -13.54130 -12.85898 -12.69785 -12.53840 -12.41259 -12.26135 -12.16239 -12.02744 -11.55145 -11.20005 -11.15644 -10.79061 -10.65607 -10.37096 -10.17930 -9.86435 -9.84139 -9.59882 -9.36611 -9.28968 -8.83935 -8.62541 -8.48092 -7.48513 -6.10051 -4.07963 0.54426 0.79169 2.77007 3.04716 3.24919 3.33237 3.34985 3.38373 3.50744 4.08739 4.37833 4.40672 4.53527 4.61708 4.63727 4.77343 4.92502 5.02106 5.14634 5.18010 5.19627 5.22308 5.32613 5.33697 5.34663 5.48482 5.55797 5.58138 5.59649 5.69040 5.73087 5.84368 5.97687 6.17491 6.18585 6.35085 6.42671 6.48142 6.62121 6.78591 6.89246 6.90977 7.48956 7.52987 7.61156 7.80752 7.93924 8.26966 8.58774 8.97202 9.51522 11.02781 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.017353 B = 0.003393 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.209015 B = 8250.033048 C = 8539.820774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.506 5.506 3 C 0.029 3.971 4 C 0.184 3.816 5 C -0.213 4.213 6 C 0.123 3.877 7 N -0.487 5.487 8 C 0.142 3.858 9 C -0.158 4.158 10 C 0.571 3.429 11 O -0.521 6.521 12 N -0.606 5.606 13 C 0.121 3.879 14 C 0.038 3.962 15 N -0.525 5.525 16 C 0.163 3.837 17 C -0.511 4.511 18 H 0.082 0.918 19 C 0.070 3.930 20 N -0.899 5.899 21 Si 0.875 3.125 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.267 1.267 25 C 0.051 3.949 26 C 0.106 3.894 27 H 0.030 0.970 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.137 0.863 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.027 0.973 40 H 0.031 0.969 41 H -0.016 1.016 42 H 0.264 0.736 43 H 0.103 0.897 44 H 0.024 0.976 45 H 0.081 0.919 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.929 3.069 5.372 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.226 5.226 3 C -0.118 4.118 4 C 0.080 3.920 5 C -0.235 4.235 6 C -0.032 4.032 7 N -0.195 5.195 8 C -0.017 4.017 9 C -0.165 4.165 10 C 0.358 3.642 11 O -0.397 6.397 12 N -0.339 5.339 13 C -0.001 4.001 14 C -0.091 4.091 15 N -0.250 5.250 16 C 0.037 3.963 17 C -0.550 4.550 18 H 0.100 0.900 19 C -0.132 4.132 20 N -0.537 5.537 21 Si 0.702 3.298 22 H -0.204 1.204 23 H -0.211 1.211 24 H -0.192 1.192 25 C -0.078 4.078 26 C -0.016 4.016 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.155 0.845 34 H 0.177 0.823 35 H 0.184 0.816 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.001 0.999 42 H 0.074 0.926 43 H 0.121 0.879 44 H 0.042 0.958 45 H 0.099 0.901 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.603 1.918 5.291 22.324 hybrid contribution -0.394 2.386 -1.005 2.619 sum -21.996 4.304 4.287 22.820 Atomic orbital electron populations 1.22414 0.84627 1.03243 1.00805 1.59079 1.09225 1.14236 1.40104 1.22491 1.01402 0.86679 1.01187 1.18969 0.91803 0.92043 0.89184 1.22656 1.04183 1.02960 0.93709 1.22747 0.91249 0.89750 0.99496 1.67743 1.13164 1.14809 1.23788 1.23140 0.94480 0.97816 0.86300 1.21054 1.01599 0.98154 0.95664 1.17726 0.82340 0.77363 0.86793 1.90758 1.48271 1.52471 1.48206 1.48132 1.06353 1.63356 1.16086 1.21733 0.97541 0.97415 0.83387 1.22453 0.91975 0.98353 0.96306 1.61910 1.04407 1.54481 1.04165 1.20185 0.88344 0.91553 0.96256 1.21008 0.91696 1.35586 1.06671 0.90025 1.24889 0.95860 0.95857 0.96612 1.69888 1.00940 1.46068 1.36833 0.86873 0.77634 0.80530 0.84754 1.20407 1.21106 1.19186 1.22349 0.97360 0.93915 0.94171 1.22150 0.87246 1.01368 0.90877 0.95125 0.90415 0.90736 0.90960 0.90260 0.94840 0.84540 0.82330 0.81588 0.89192 0.90636 0.90013 0.95442 0.95138 0.99880 0.92608 0.87884 0.95796 0.90120 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 9.34 60.07 0.56 0.89 16 2 N -0.51 -5.87 3.98 -186.42 -0.74 -6.61 16 3 C 0.03 0.27 9.38 60.06 0.56 0.84 16 4 C 0.18 2.17 4.71 -83.41 -0.39 1.77 16 5 C -0.21 -1.97 8.65 -39.28 -0.34 -2.31 16 6 C 0.12 1.15 11.15 -17.57 -0.20 0.95 16 7 N -0.49 -5.61 10.34 -13.01 -0.13 -5.75 16 8 C 0.14 1.68 8.73 -17.16 -0.15 1.53 16 9 C -0.16 -2.08 4.91 -104.66 -0.51 -2.59 16 10 C 0.57 8.74 7.03 -12.51 -0.09 8.66 16 11 O -0.52 -9.32 15.88 5.28 0.08 -9.24 16 12 N -0.61 -9.00 3.01 -173.72 -0.52 -9.53 16 13 C 0.12 1.81 6.61 -3.60 -0.02 1.78 16 14 C 0.04 0.65 5.62 -3.70 -0.02 0.63 16 15 N -0.53 -10.44 4.62 -235.77 -1.09 -11.53 16 16 C 0.16 3.82 3.79 -4.98 -0.02 3.80 16 17 C -0.51 -13.98 8.96 -34.44 -0.31 -14.29 16 18 H 0.08 2.40 7.37 -52.48 -0.39 2.02 16 19 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 20 N -0.90 -26.87 13.96 55.43 0.77 -26.09 16 21 Si 0.87 21.10 27.47 -169.99 -4.67 16.43 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 25 C 0.05 0.92 5.46 -3.71 -0.02 0.90 16 26 C 0.11 1.53 5.28 -3.60 -0.02 1.51 16 27 H 0.03 0.22 7.19 -51.93 -0.37 -0.15 16 28 H 0.08 0.62 8.12 -51.93 -0.42 0.20 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 32 H 0.03 0.26 7.40 -51.93 -0.38 -0.13 16 33 H 0.14 0.94 7.16 -52.48 -0.38 0.56 16 34 H 0.16 0.98 8.06 -52.48 -0.42 0.55 16 35 H 0.17 1.75 7.19 -52.49 -0.38 1.37 16 36 H 0.09 1.33 7.04 -51.93 -0.37 0.96 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.08 1.30 7.99 -51.93 -0.41 0.89 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.03 0.73 7.03 -51.93 -0.36 0.36 16 41 H -0.02 -0.39 7.55 -51.93 -0.39 -0.78 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.10 2.04 6.67 -51.93 -0.35 1.70 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.08 1.02 5.23 -51.93 -0.27 0.75 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -32.80 364.40 -8.90 -41.70 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -7.02 Total: -0.80 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -1.06 Total: 5.93 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -1.71 Total: -59.50 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.08 Total: -9.24 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.80 -8.90 -41.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.319 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds