Wall clock time and date at job start Tue Mar 31 2020 04:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46878 * 2 1 4 4 N 1.46503 * 109.47186 * 119.99329 * 2 1 3 5 5 C 1.34773 * 120.00289 * 274.99992 * 4 2 1 6 6 O 1.21275 * 120.00003 * 0.02562 * 5 4 2 7 7 C 1.50695 * 119.99945 * 179.97438 * 5 4 2 8 8 H 1.09008 * 109.42384 * 59.89232 * 7 5 4 9 9 C 1.53031 * 109.42668 * 179.71946 * 7 5 4 10 10 C 1.53382 * 109.72590 * 191.81004 * 9 7 5 11 11 C 1.50886 * 108.19632 * 309.47095 * 10 9 7 12 12 C 1.34567 * 128.32316 * 196.72710 * 11 10 9 13 13 N 1.35198 * 107.61556 * 179.71607 * 12 11 10 14 14 H 0.97001 * 126.00462 * 180.02562 * 13 12 11 15 15 N 1.40317 * 107.99281 * 0.04159 * 13 12 11 16 16 C 1.30127 * 108.12452 * 0.04028 * 15 13 12 17 17 C 1.50942 * 128.28581 * 179.85468 * 16 15 13 18 18 C 1.52999 * 109.47310 * 239.99899 * 2 1 3 19 19 C 1.53946 * 113.84014 * 326.34918 * 18 2 1 20 20 N 1.47580 * 86.11645 * 90.74977 * 19 18 2 21 21 C 1.36940 * 134.49194 * 204.64076 * 20 19 18 22 22 H 1.08004 * 119.99910 * 180.02562 * 21 20 19 23 23 C 1.38813 * 120.00130 * 0.02562 * 21 20 19 24 24 N 1.31623 * 119.99843 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00040 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47395 * 89.99952 * 25 23 21 27 27 H 1.48496 * 109.47269 * 210.00118 * 25 23 21 28 28 H 1.48507 * 109.47337 * 329.99895 * 25 23 21 29 29 C 1.47585 * 91.01539 * 24.64210 * 20 19 18 30 30 H 1.09007 * 109.46890 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47387 * 299.99831 * 1 2 3 32 32 H 1.08996 * 109.47692 * 60.00437 * 1 2 3 33 33 H 0.97003 * 119.98988 * 95.00470 * 4 2 1 34 34 H 1.08998 * 109.42917 * 311.89568 * 9 7 5 35 35 H 1.09006 * 109.42271 * 71.73944 * 9 7 5 36 36 H 1.09001 * 109.72420 * 189.78908 * 10 9 7 37 37 H 1.09000 * 109.74089 * 69.16311 * 10 9 7 38 38 H 1.07993 * 126.19519 * 359.68898 * 12 11 10 39 39 H 1.08999 * 109.71553 * 76.98686 * 17 16 15 40 40 H 1.09000 * 109.71641 * 316.33576 * 17 16 15 41 41 H 1.09002 * 112.94549 * 194.66377 * 18 2 1 42 42 H 1.08996 * 113.77105 * 205.05389 * 19 18 2 43 43 H 1.09002 * 113.76556 * 336.45321 * 19 18 2 44 44 H 0.96992 * 119.99795 * 179.97438 * 24 23 21 45 45 H 1.08996 * 113.76681 * 221.05446 * 29 20 19 46 46 H 1.08994 * 113.76726 * 89.65745 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1471 -0.0181 2.3572 6 8 1.8582 1.1585 2.4117 7 6 2.6489 -0.7285 3.5878 8 1 3.6473 -1.1224 3.3971 9 6 2.7067 0.2575 4.7567 10 6 3.4842 -0.3666 5.9223 11 6 2.9111 -1.7362 6.1913 12 6 3.0624 -2.5038 7.2861 13 7 2.3648 -3.6445 7.0857 14 1 2.2915 -4.3849 7.7081 15 7 1.7660 -3.5694 5.8190 16 6 2.0934 -2.4296 5.2833 17 6 1.7014 -1.8847 3.9314 18 6 2.0400 -0.7213 -1.2492 19 6 1.1424 -1.8857 -1.7055 20 7 0.4435 -0.8882 -2.5389 21 6 -0.8147 -0.7949 -3.0715 22 1 -1.0874 0.0654 -3.6649 23 6 -1.7395 -1.8058 -2.8488 24 7 -1.4073 -2.8539 -2.1252 25 14 -3.4558 -1.6781 -3.5747 26 1 -3.4709 -2.3012 -4.9226 27 1 -4.4201 -2.3832 -2.6927 28 1 -3.8411 -0.2482 -3.6861 29 6 1.6450 -0.0317 -2.5677 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 2.2491 -1.6317 1.1526 34 1 3.2063 1.1715 4.4356 35 1 1.6936 0.4939 5.0819 36 1 3.3791 0.2569 6.8102 37 1 4.5378 -0.4543 5.6571 38 1 3.6373 -2.2541 8.1656 39 1 0.6745 -1.5208 3.9652 40 1 1.7899 -2.6686 3.1792 41 1 3.0972 -0.9798 -1.1888 42 1 1.6690 -2.6472 -2.2806 43 1 0.5255 -2.3028 -0.9095 44 1 -2.0536 -3.5601 -1.9692 45 1 1.4294 1.0313 -2.4602 46 1 2.3193 -0.2487 -3.3961 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970913402.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:51 Heat of formation + Delta-G solvation = 86.239889 kcal Electronic energy + Delta-G solvation = -27053.849840 eV Core-core repulsion = 23367.536602 eV Total energy + Delta-G solvation = -3686.313238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.66397 -39.87259 -38.42204 -36.16071 -34.35076 -32.44828 -32.07273 -31.01933 -29.39922 -28.53121 -27.52793 -25.18640 -24.85839 -24.03195 -22.57907 -21.28143 -21.08174 -19.96235 -19.02959 -18.33587 -17.79502 -16.81109 -16.67640 -15.70123 -15.46570 -14.94980 -14.85013 -14.77934 -14.20021 -13.96163 -13.79067 -13.70354 -13.44006 -12.98804 -12.89707 -12.56731 -12.30944 -12.01123 -11.67537 -11.47969 -11.27944 -11.15367 -11.04652 -10.96576 -10.94354 -10.71035 -10.52484 -10.40461 -10.29651 -9.82159 -9.56995 -9.56591 -9.48782 -9.26725 -8.69959 -8.62149 -8.57689 -6.78649 -5.72987 -3.03921 1.70635 2.54533 2.62077 2.93480 3.41754 3.47612 3.48816 3.49260 4.25378 4.49669 4.51092 4.75211 4.77122 4.96336 5.11939 5.21527 5.24894 5.33519 5.38706 5.42229 5.44138 5.46229 5.62902 5.63837 5.80766 5.85947 5.98582 6.00363 6.06970 6.16952 6.24482 6.33804 6.47720 6.48085 6.55652 6.68689 6.78982 6.82130 7.08134 7.08949 7.29312 7.33257 7.49685 7.52276 7.66467 7.89783 8.02556 8.55189 9.09293 9.75409 10.64972 11.43772 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.017941 B = 0.003034 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.254598 B = 9227.119671 C =10082.641870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.172 3.828 3 H 0.075 0.925 4 N -0.717 5.717 5 C 0.517 3.483 6 O -0.544 6.544 7 C -0.101 4.101 8 H 0.099 0.901 9 C -0.098 4.098 10 C -0.040 4.040 11 C -0.235 4.235 12 C 0.057 3.943 13 N -0.487 5.487 14 H 0.438 0.562 15 N -0.284 5.284 16 C 0.088 3.912 17 C -0.031 4.031 18 C -0.154 4.154 19 C 0.164 3.836 20 N -0.605 5.605 21 C -0.218 4.218 22 H 0.077 0.923 23 C -0.005 4.005 24 N -0.919 5.919 25 Si 0.906 3.094 26 H -0.291 1.291 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.126 3.874 30 H 0.074 0.926 31 H 0.028 0.972 32 H 0.083 0.917 33 H 0.398 0.602 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.175 0.825 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.023 0.977 43 H 0.080 0.920 44 H 0.252 0.748 45 H 0.045 0.955 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.015 0.931 18.693 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.069 3.931 3 H 0.094 0.906 4 N -0.367 5.367 5 C 0.303 3.697 6 O -0.421 6.421 7 C -0.123 4.123 8 H 0.117 0.883 9 C -0.136 4.136 10 C -0.079 4.079 11 C -0.247 4.247 12 C -0.088 4.088 13 N -0.195 5.195 14 H 0.282 0.718 15 N -0.107 5.107 16 C -0.081 4.081 17 C -0.071 4.071 18 C -0.174 4.174 19 C 0.038 3.962 20 N -0.332 5.332 21 C -0.346 4.346 22 H 0.095 0.905 23 C -0.201 4.201 24 N -0.567 5.567 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.217 1.217 28 H -0.207 1.207 29 C -0.001 4.001 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.102 0.898 33 H 0.232 0.768 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.192 0.808 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.082 0.918 42 H 0.040 0.960 43 H 0.098 0.902 44 H 0.062 0.938 45 H 0.063 0.937 46 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 11.818 0.610 18.509 21.968 hybrid contribution -0.366 -0.423 -0.058 0.562 sum 11.452 0.188 18.451 21.717 Atomic orbital electron populations 1.22139 0.93243 1.04111 1.01053 1.20621 0.95542 0.95254 0.81693 0.90650 1.46221 1.66459 1.14017 1.10031 1.20382 0.77780 0.87271 0.84317 1.90679 1.50265 1.16154 1.85003 1.21334 1.00633 0.96317 0.94037 0.88294 1.21378 1.01766 0.97573 0.92888 1.20030 0.98665 0.90737 0.98422 1.20182 1.08599 1.00368 0.95533 1.22051 0.98512 0.88016 1.00239 1.46353 1.40943 1.16904 1.15335 0.71821 1.77081 1.20084 1.20313 0.93174 1.22245 0.96824 0.91835 0.97162 1.20059 0.99872 0.96465 0.90680 1.23505 0.98335 1.00837 0.94711 1.22359 0.89932 0.90198 0.93684 1.46007 1.06667 1.20109 1.60405 1.18962 0.85665 1.03816 1.26137 0.90484 1.24697 0.98093 0.96634 1.00717 1.69790 1.34207 1.09844 1.42810 0.86211 0.84420 0.77367 0.78327 1.21843 1.21729 1.20693 1.22531 0.89105 0.95479 0.92976 0.90663 0.95252 0.89793 0.76808 0.90222 0.91130 0.90949 0.91168 0.80810 0.88993 0.89073 0.91769 0.95974 0.90218 0.93787 0.93715 0.94777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 8.21 37.16 0.30 -2.73 16 2 C 0.17 3.00 2.69 -67.93 -0.18 2.82 16 3 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 4 N -0.72 -10.41 4.98 -53.81 -0.27 -10.68 16 5 C 0.52 7.49 7.10 -10.99 -0.08 7.41 16 6 O -0.54 -9.85 15.43 5.56 0.09 -9.76 16 7 C -0.10 -1.11 2.46 -91.56 -0.23 -1.34 16 8 H 0.10 0.93 8.10 -51.92 -0.42 0.51 16 9 C -0.10 -1.02 4.65 -26.52 -0.12 -1.15 16 10 C -0.04 -0.33 6.28 -27.59 -0.17 -0.50 16 11 C -0.24 -2.30 5.89 -104.98 -0.62 -2.92 16 12 C 0.06 0.44 11.95 -17.37 -0.21 0.24 16 13 N -0.49 -4.27 7.37 30.35 0.22 -4.05 16 14 H 0.44 2.37 8.96 -182.43 -1.64 0.74 16 15 N -0.28 -3.58 12.68 33.75 0.43 -3.15 16 16 C 0.09 1.04 7.10 -82.35 -0.58 0.46 16 17 C -0.03 -0.36 5.43 -27.57 -0.15 -0.51 16 18 C -0.15 -2.72 4.07 -89.69 -0.36 -3.09 16 19 C 0.16 3.59 6.52 -2.97 -0.02 3.57 16 20 N -0.61 -14.64 2.18 -177.91 -0.39 -15.02 16 21 C -0.22 -5.89 9.81 -15.06 -0.15 -6.04 16 22 H 0.08 2.05 7.83 -52.48 -0.41 1.63 16 23 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 24 N -0.92 -26.20 11.38 55.49 0.63 -25.57 16 25 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 C 0.13 2.48 8.13 -2.97 -0.02 2.46 16 30 H 0.07 1.73 6.19 -51.93 -0.32 1.41 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.92 6.15 -51.93 -0.32 1.60 16 33 H 0.40 5.00 8.25 -40.82 -0.34 4.66 16 34 H 0.08 0.87 7.69 -51.93 -0.40 0.47 16 35 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.09 1.14 8.12 -51.93 -0.42 0.72 16 40 H 0.09 0.99 7.87 -51.93 -0.41 0.58 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 1.90 5.49 -51.93 -0.28 1.62 16 44 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.04 0.85 8.10 -51.93 -0.42 0.43 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 364.33 15.07 5.49 5.49 Total: -1.00 -33.31 364.33 -9.80 -43.11 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -8.29 Total: 4.18 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -2.69 Total: -1.53 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.63 Total: -58.46 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.31 -9.80 -43.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970913402.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.346 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds