Wall clock time and date at job start Tue Mar 31 2020 05:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 120.00066 * 2 1 4 4 H 1.08001 * 119.99671 * 161.07331 * 3 2 1 5 5 C 1.38803 * 119.99889 * 340.79934 * 3 2 1 6 6 N 1.31617 * 120.00425 * 346.78606 * 5 3 2 7 7 Si 1.86801 * 119.99964 * 166.78942 * 5 3 2 8 8 H 1.48503 * 109.47489 * 89.99706 * 7 5 3 9 9 H 1.48500 * 109.47549 * 210.00005 * 7 5 3 10 10 H 1.48501 * 109.47128 * 329.99706 * 7 5 3 11 11 C 1.46507 * 120.00088 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.64058 * 181.68922 * 11 2 1 13 13 C 1.55152 * 110.71634 * 305.02818 * 11 2 1 14 14 C 1.54913 * 101.58124 * 153.86429 * 13 11 2 15 15 N 1.47422 * 104.83249 * 322.98961 * 14 13 11 16 16 C 1.34779 * 125.64838 * 204.09566 * 15 14 13 17 17 O 1.21572 * 119.99725 * 180.02562 * 16 15 14 18 18 C 1.47708 * 119.99929 * 0.03414 * 16 15 14 19 19 C 1.41645 * 126.49432 * 179.71142 * 18 16 15 20 20 C 1.34702 * 105.33051 * 179.83663 * 19 18 16 21 21 N 1.35504 * 107.71659 * 0.44654 * 20 19 18 22 22 N 1.28423 * 109.71944 * 359.68555 * 21 20 19 23 23 C 1.46997 * 123.90414 * 179.68406 * 21 20 19 24 24 C 1.53176 * 108.87140 * 342.27038 * 23 21 20 25 25 C 1.53147 * 109.57491 * 51.17526 * 24 23 21 26 26 C 1.50799 * 127.53567 * 180.16428 * 20 19 18 27 27 C 1.47019 * 108.70219 * 24.12607 * 15 14 13 28 28 H 1.09004 * 109.46481 * 84.81432 * 1 2 3 29 29 H 1.09000 * 109.47205 * 204.80959 * 1 2 3 30 30 H 1.08991 * 109.47212 * 324.81502 * 1 2 3 31 31 H 0.97001 * 120.00682 * 180.02562 * 6 5 3 32 32 H 1.09003 * 111.00547 * 271.93388 * 13 11 2 33 33 H 1.08995 * 111.01135 * 35.78567 * 13 11 2 34 34 H 1.09000 * 110.36967 * 204.14663 * 14 13 11 35 35 H 1.09008 * 110.46035 * 81.87011 * 14 13 11 36 36 H 1.07993 * 127.33398 * 359.95748 * 19 18 16 37 37 H 1.08997 * 109.56576 * 102.19201 * 23 21 20 38 38 H 1.09005 * 109.56334 * 222.54390 * 23 21 20 39 39 H 1.09005 * 109.49417 * 291.12430 * 24 23 21 40 40 H 1.08994 * 109.43535 * 171.19216 * 24 23 21 41 41 H 1.09006 * 109.54345 * 170.50448 * 25 24 23 42 42 H 1.08998 * 109.54720 * 50.24625 * 25 24 23 43 43 H 1.09000 * 109.71554 * 284.46735 * 26 20 19 44 44 H 1.09000 * 109.71706 * 45.10894 * 26 20 19 45 45 H 1.09010 * 109.88275 * 239.52486 * 27 15 14 46 46 H 1.09001 * 109.88607 * 118.36392 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1859 1.2111 0.3034 5 6 1.5136 2.3545 -0.3953 6 7 0.3519 2.2956 -1.0113 7 14 2.3062 4.0111 -0.0532 8 1 3.1740 4.3904 -1.1971 9 1 1.2489 5.0379 0.1278 10 1 3.1261 3.9219 1.1817 11 6 2.1976 -1.2688 -0.0006 12 1 3.2727 -1.0917 0.0296 13 6 1.7506 -2.1611 1.1874 14 6 2.0637 -3.5786 0.6466 15 7 1.7324 -3.5167 -0.7886 16 6 1.4056 -4.5685 -1.5654 17 8 1.1506 -4.3992 -2.7419 18 6 1.3571 -5.9268 -0.9872 19 6 1.0267 -7.1223 -1.6712 20 6 1.1183 -8.0983 -0.7473 21 7 1.4729 -7.5225 0.4269 22 7 1.6075 -6.2556 0.2651 23 6 1.6661 -8.2668 1.6797 24 6 0.9919 -9.6362 1.5514 25 6 1.4599 -10.3199 0.2634 26 6 0.8725 -9.5733 -0.9417 27 6 1.8183 -2.1177 -1.2323 28 1 -0.3632 0.0929 -1.0235 29 1 -0.3633 -0.9328 0.4312 30 1 -0.3633 0.8398 0.5921 31 1 -0.0925 3.1122 -1.2879 32 1 2.3372 -1.9453 2.0804 33 1 0.6850 -2.0446 1.3843 34 1 1.4430 -4.3215 1.1476 35 1 3.1195 -3.8136 0.7824 36 1 0.7601 -7.2289 -2.7123 37 1 2.7320 -8.3988 1.8652 38 1 1.2157 -7.7153 2.5051 39 1 -0.0901 -9.5076 1.5216 40 1 1.2600 -10.2541 2.4084 41 1 1.1164 -11.3544 0.2542 42 1 2.5484 -10.2954 0.2123 43 1 -0.1991 -9.7624 -1.0048 44 1 1.3604 -9.9101 -1.8563 45 1 0.8541 -1.7930 -1.6236 46 1 2.5848 -2.0189 -2.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971754321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:02 Heat of formation + Delta-G solvation = 76.580230 kcal Electronic energy + Delta-G solvation = -26906.862793 eV Core-core repulsion = 23220.130681 eV Total energy + Delta-G solvation = -3686.732112 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.87741 -39.41655 -37.33315 -36.83406 -34.70520 -33.30063 -31.70461 -30.54972 -29.53594 -28.90051 -27.80421 -26.00487 -25.04953 -23.98887 -22.67701 -22.20115 -21.89858 -19.93392 -19.12586 -18.56261 -17.10690 -16.90782 -16.72502 -16.21127 -15.67587 -15.16832 -14.87819 -14.70926 -14.52488 -14.40118 -13.84892 -13.69873 -13.37040 -13.22008 -13.00924 -12.60087 -12.39096 -12.21589 -12.06726 -11.78034 -11.66434 -11.56938 -11.47708 -11.42117 -10.85264 -10.77202 -10.64895 -10.44740 -10.35764 -10.20316 -9.83239 -9.74447 -9.69696 -9.11538 -9.01142 -8.51996 -8.13634 -6.79510 -5.70315 -3.14722 1.64745 2.08947 2.25533 3.35964 3.40970 3.46932 3.48871 3.67399 3.90581 4.11928 4.19601 4.30681 4.50946 4.61688 4.72468 4.86700 4.94504 5.11492 5.16310 5.19727 5.22342 5.33155 5.38232 5.44772 5.49563 5.59377 5.62299 5.73465 5.76799 5.84362 5.97877 6.01363 6.17018 6.37221 6.44322 6.50878 6.62656 6.69694 6.82989 6.91623 6.96593 7.44478 7.76356 7.84261 7.84971 7.97087 8.38617 8.53820 9.24321 9.87347 10.35159 11.34310 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.033874 B = 0.002603 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.406317 B =10754.697166 C =11201.359276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.587 5.587 3 C -0.257 4.257 4 H 0.072 0.928 5 C 0.001 3.999 6 N -0.907 5.907 7 Si 0.907 3.093 8 H -0.287 1.287 9 H -0.290 1.290 10 H -0.280 1.280 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.107 3.893 15 N -0.599 5.599 16 C 0.609 3.391 17 O -0.540 6.540 18 C -0.003 4.003 19 C -0.177 4.177 20 C 0.009 3.991 21 N -0.287 5.287 22 N -0.255 5.255 23 C 0.122 3.878 24 C -0.136 4.136 25 C -0.127 4.127 26 C -0.051 4.051 27 C 0.087 3.913 28 H 0.029 0.971 29 H 0.001 0.999 30 H 0.048 0.952 31 H 0.253 0.747 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.161 0.839 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.074 0.926 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.774 -27.621 6.944 28.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.308 5.308 3 C -0.387 4.387 4 H 0.089 0.911 5 C -0.197 4.197 6 N -0.552 5.552 7 Si 0.737 3.263 8 H -0.214 1.214 9 H -0.216 1.216 10 H -0.206 1.206 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.017 4.017 15 N -0.332 5.332 16 C 0.395 3.605 17 O -0.417 6.417 18 C -0.164 4.164 19 C -0.205 4.205 20 C -0.115 4.115 21 N -0.076 5.076 22 N -0.090 5.090 23 C 0.002 3.998 24 C -0.174 4.174 25 C -0.165 4.165 26 C -0.090 4.090 27 C -0.037 4.037 28 H 0.048 0.952 29 H 0.019 0.981 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.178 0.822 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.109 0.891 45 H 0.092 0.908 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.821 -26.975 7.375 28.024 hybrid contribution 0.147 0.643 -0.626 0.909 sum 1.968 -26.332 6.749 27.255 Atomic orbital electron populations 1.20819 0.82263 0.95630 0.99574 1.43972 1.02024 0.99910 1.84885 1.19251 0.96318 0.84614 1.38471 0.91058 1.24991 0.97582 0.98437 0.98730 1.70103 1.16853 1.26690 1.41507 0.86225 0.78219 0.83823 0.78040 1.21446 1.21627 1.20562 1.21352 0.96308 0.85848 0.90242 0.90371 1.23369 1.02637 0.93591 0.99808 1.22419 1.00253 0.98570 0.80426 1.48354 1.66274 1.07526 1.11023 1.16559 0.77576 0.81428 0.84952 1.90782 1.50846 1.84577 1.15451 1.21989 1.08563 0.95412 0.90427 1.21298 1.08326 0.89998 1.00855 1.21231 1.06791 0.96774 0.86690 1.45792 1.48630 1.04033 1.09140 1.73582 1.19846 0.95776 1.19794 1.22114 1.02758 0.91878 0.83053 1.21940 1.01637 0.94193 0.99676 1.21691 1.01434 0.99786 0.93551 1.20330 1.02260 0.86884 0.99477 1.22951 1.02430 0.78498 0.99812 0.95244 0.98071 0.93365 0.93683 0.90552 0.90579 0.89795 0.92022 0.82176 0.89007 0.88169 0.90360 0.88788 0.90133 0.91074 0.89563 0.89112 0.90775 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.07 7.72 59.85 0.46 4.53 16 2 N -0.59 -14.81 2.94 -171.39 -0.50 -15.31 16 3 C -0.26 -7.05 9.66 -15.06 -0.15 -7.20 16 4 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 5 C 0.00 0.02 5.11 -17.43 -0.09 -0.07 16 6 N -0.91 -26.75 10.50 55.49 0.58 -26.16 16 7 Si 0.91 21.97 29.57 -169.99 -5.03 16.94 16 8 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 9 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 C 0.17 3.60 3.45 -66.09 -0.23 3.37 16 12 H 0.08 1.59 7.91 -51.93 -0.41 1.18 16 13 C -0.15 -2.67 6.59 -24.58 -0.16 -2.83 16 14 C 0.11 1.70 6.15 -2.53 -0.02 1.68 16 15 N -0.60 -11.28 3.33 -171.67 -0.57 -11.85 16 16 C 0.61 11.83 7.86 -12.39 -0.10 11.73 16 17 O -0.54 -12.09 17.25 5.30 0.09 -12.00 16 18 C 0.00 -0.06 6.97 -82.68 -0.58 -0.63 16 19 C -0.18 -2.41 10.75 -39.53 -0.43 -2.84 16 20 C 0.01 0.09 6.57 -82.17 -0.54 -0.45 16 21 N -0.29 -3.13 3.74 -56.69 -0.21 -3.34 16 22 N -0.26 -3.63 9.14 33.46 0.31 -3.32 16 23 C 0.12 0.76 7.17 -3.68 -0.03 0.74 16 24 C -0.14 -0.53 5.92 -26.56 -0.16 -0.68 16 25 C -0.13 -0.52 5.98 -26.43 -0.16 -0.68 16 26 C -0.05 -0.31 6.28 -27.61 -0.17 -0.49 16 27 C 0.09 1.83 6.50 -3.07 -0.02 1.81 16 28 H 0.03 0.81 7.36 -51.93 -0.38 0.43 16 29 H 0.00 0.02 6.13 -51.93 -0.32 -0.30 16 30 H 0.05 1.30 7.08 -51.93 -0.37 0.93 16 31 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.08 1.40 6.14 -51.93 -0.32 1.08 16 34 H 0.08 1.28 6.20 -51.93 -0.32 0.95 16 35 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 36 H 0.16 2.03 8.06 -52.49 -0.42 1.60 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.34 8.11 -51.93 -0.42 -0.08 16 40 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 42 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 43 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.07 1.75 7.06 -51.92 -0.37 1.38 16 46 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 362.04 15.07 5.46 5.46 Total: -1.00 -34.33 362.04 -9.33 -43.66 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -7.10 Total: -2.08 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -2.35 Total: 8.01 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: -0.40 Total: -59.98 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.00 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.33 -9.33 -43.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971754321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.243 kcal (2) G-P(sol) polarization free energy of solvation -34.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds