Wall clock time and date at job start Tue Mar 31 2020 05:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36936 * 120.00066 * 2 1 4 4 H 1.08001 * 119.99671 * 161.07331 * 3 2 1 5 5 C 1.38803 * 119.99889 * 340.79934 * 3 2 1 6 6 N 1.31617 * 120.00425 * 346.78606 * 5 3 2 7 7 Si 1.86801 * 119.99964 * 166.78942 * 5 3 2 8 8 H 1.48503 * 109.47489 * 89.99706 * 7 5 3 9 9 H 1.48500 * 109.47549 * 210.00005 * 7 5 3 10 10 H 1.48501 * 109.47128 * 329.99706 * 7 5 3 11 11 C 1.46507 * 120.00088 * 180.02562 * 2 1 3 12 12 H 1.09001 * 110.64058 * 181.68922 * 11 2 1 13 13 C 1.55152 * 110.71634 * 305.02818 * 11 2 1 14 14 C 1.54913 * 101.58124 * 153.86429 * 13 11 2 15 15 N 1.47422 * 104.83249 * 322.98961 * 14 13 11 16 16 C 1.34779 * 125.64838 * 204.09566 * 15 14 13 17 17 O 1.21572 * 119.99725 * 180.02562 * 16 15 14 18 18 C 1.47708 * 119.99929 * 0.03414 * 16 15 14 19 19 C 1.41645 * 126.49432 * 179.71142 * 18 16 15 20 20 C 1.34702 * 105.33051 * 179.83663 * 19 18 16 21 21 N 1.35504 * 107.71659 * 0.44654 * 20 19 18 22 22 N 1.28423 * 109.71944 * 359.68555 * 21 20 19 23 23 C 1.46997 * 123.90414 * 179.68406 * 21 20 19 24 24 C 1.53176 * 108.87140 * 342.27038 * 23 21 20 25 25 C 1.53147 * 109.57491 * 51.17526 * 24 23 21 26 26 C 1.50799 * 127.53567 * 180.16428 * 20 19 18 27 27 C 1.47019 * 108.70219 * 24.12607 * 15 14 13 28 28 H 1.09004 * 109.46481 * 84.81432 * 1 2 3 29 29 H 1.09000 * 109.47205 * 204.80959 * 1 2 3 30 30 H 1.08991 * 109.47212 * 324.81502 * 1 2 3 31 31 H 0.97001 * 120.00682 * 180.02562 * 6 5 3 32 32 H 1.09003 * 111.00547 * 271.93388 * 13 11 2 33 33 H 1.08995 * 111.01135 * 35.78567 * 13 11 2 34 34 H 1.09000 * 110.36967 * 204.14663 * 14 13 11 35 35 H 1.09008 * 110.46035 * 81.87011 * 14 13 11 36 36 H 1.07993 * 127.33398 * 359.95748 * 19 18 16 37 37 H 1.08997 * 109.56576 * 102.19201 * 23 21 20 38 38 H 1.09005 * 109.56334 * 222.54390 * 23 21 20 39 39 H 1.09005 * 109.49417 * 291.12430 * 24 23 21 40 40 H 1.08994 * 109.43535 * 171.19216 * 24 23 21 41 41 H 1.09006 * 109.54345 * 170.50448 * 25 24 23 42 42 H 1.08998 * 109.54720 * 50.24625 * 25 24 23 43 43 H 1.09000 * 109.71554 * 284.46735 * 26 20 19 44 44 H 1.09000 * 109.71706 * 45.10894 * 26 20 19 45 45 H 1.09010 * 109.88275 * 239.52486 * 27 15 14 46 46 H 1.09001 * 109.88607 * 118.36392 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1859 1.2111 0.3034 5 6 1.5136 2.3545 -0.3953 6 7 0.3519 2.2956 -1.0113 7 14 2.3062 4.0111 -0.0532 8 1 3.1740 4.3904 -1.1971 9 1 1.2489 5.0379 0.1278 10 1 3.1261 3.9219 1.1817 11 6 2.1976 -1.2688 -0.0006 12 1 3.2727 -1.0917 0.0296 13 6 1.7506 -2.1611 1.1874 14 6 2.0637 -3.5786 0.6466 15 7 1.7324 -3.5167 -0.7886 16 6 1.4056 -4.5685 -1.5654 17 8 1.1506 -4.3992 -2.7419 18 6 1.3571 -5.9268 -0.9872 19 6 1.0267 -7.1223 -1.6712 20 6 1.1183 -8.0983 -0.7473 21 7 1.4729 -7.5225 0.4269 22 7 1.6075 -6.2556 0.2651 23 6 1.6661 -8.2668 1.6797 24 6 0.9919 -9.6362 1.5514 25 6 1.4599 -10.3199 0.2634 26 6 0.8725 -9.5733 -0.9417 27 6 1.8183 -2.1177 -1.2323 28 1 -0.3632 0.0929 -1.0235 29 1 -0.3633 -0.9328 0.4312 30 1 -0.3633 0.8398 0.5921 31 1 -0.0925 3.1122 -1.2879 32 1 2.3372 -1.9453 2.0804 33 1 0.6850 -2.0446 1.3843 34 1 1.4430 -4.3215 1.1476 35 1 3.1195 -3.8136 0.7824 36 1 0.7601 -7.2289 -2.7123 37 1 2.7320 -8.3988 1.8652 38 1 1.2157 -7.7153 2.5051 39 1 -0.0901 -9.5076 1.5216 40 1 1.2600 -10.2541 2.4084 41 1 1.1164 -11.3544 0.2542 42 1 2.5484 -10.2954 0.2123 43 1 -0.1991 -9.7624 -1.0048 44 1 1.3604 -9.9101 -1.8563 45 1 0.8541 -1.7930 -1.6236 46 1 2.5848 -2.0189 -2.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971754321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:01 Heat of formation + Delta-G solvation = 54.737621 kcal Electronic energy + Delta-G solvation = -26907.809960 eV Core-core repulsion = 23220.130681 eV Total energy + Delta-G solvation = -3687.679279 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.81552 -40.94654 -38.91611 -37.46525 -36.57864 -34.04886 -33.53653 -31.73273 -31.02722 -29.63707 -29.37637 -28.09766 -26.19623 -24.97671 -24.22200 -23.27808 -22.94277 -20.93405 -20.75704 -19.73442 -18.97358 -17.95795 -17.73971 -17.45518 -17.19395 -16.67855 -16.31370 -15.71573 -15.40816 -15.06973 -15.00434 -14.97055 -14.73523 -14.57730 -14.43120 -14.09536 -13.87243 -13.58993 -13.34355 -13.19357 -12.84708 -12.74565 -12.55059 -12.41839 -12.27922 -12.13713 -12.09200 -11.93153 -11.85739 -11.79294 -11.60808 -11.36274 -11.29627 -10.63181 -10.14275 -9.92231 -9.66576 -8.87365 -7.83217 -5.30685 0.47934 1.10885 1.45268 1.48500 1.49525 1.59252 1.96256 2.29322 2.51824 3.18965 3.29425 3.51551 3.54956 3.66927 3.82099 3.83633 3.91299 3.98429 4.25676 4.27279 4.33972 4.35148 4.43398 4.44119 4.51330 4.68077 4.71266 4.75534 4.77255 4.89254 4.90237 5.00540 5.04009 5.05736 5.14494 5.16632 5.17921 5.28226 5.33643 5.38630 5.41409 5.62500 5.70143 5.89059 6.28874 6.44185 6.81928 7.08104 7.12301 7.82553 8.27000 9.20584 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.033874 B = 0.002603 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.406317 B =10754.697166 C =11201.359276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.182 3.818 2 N -0.602 5.602 3 C -0.264 4.264 4 H 0.082 0.918 5 C -0.058 4.058 6 N -0.943 5.943 7 Si 0.975 3.025 8 H -0.287 1.287 9 H -0.295 1.295 10 H -0.265 1.265 11 C 0.168 3.832 12 H 0.087 0.913 13 C -0.138 4.138 14 C 0.117 3.883 15 N -0.602 5.602 16 C 0.603 3.397 17 O -0.584 6.584 18 C -0.038 4.038 19 C -0.204 4.204 20 C 0.027 3.973 21 N -0.276 5.276 22 N -0.261 5.261 23 C 0.107 3.893 24 C -0.130 4.130 25 C -0.124 4.124 26 C -0.053 4.053 27 C 0.098 3.902 28 H -0.006 1.006 29 H 0.026 0.974 30 H 0.025 0.975 31 H 0.248 0.752 32 H 0.103 0.897 33 H 0.065 0.935 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.158 0.842 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.124 0.876 41 H 0.105 0.895 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.039 0.961 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.097 -30.751 9.688 32.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.323 5.323 3 C -0.394 4.394 4 H 0.100 0.900 5 C -0.253 4.253 6 N -0.590 5.590 7 Si 0.803 3.197 8 H -0.214 1.214 9 H -0.222 1.222 10 H -0.190 1.190 11 C 0.060 3.940 12 H 0.105 0.895 13 C -0.178 4.178 14 C -0.005 4.005 15 N -0.334 5.334 16 C 0.392 3.608 17 O -0.464 6.464 18 C -0.196 4.196 19 C -0.232 4.232 20 C -0.098 4.098 21 N -0.066 5.066 22 N -0.098 5.098 23 C -0.011 4.011 24 C -0.168 4.168 25 C -0.161 4.161 26 C -0.091 4.091 27 C -0.028 4.028 28 H 0.013 0.987 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.176 0.824 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.094 0.906 40 H 0.143 0.857 41 H 0.123 0.877 42 H 0.089 0.911 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.057 0.943 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 3.179 -30.150 10.169 31.977 hybrid contribution -0.243 1.431 -1.441 2.045 sum 2.936 -28.719 8.728 30.159 Atomic orbital electron populations 1.20468 0.82827 0.95832 0.97192 1.44160 1.02002 1.01035 1.85083 1.19676 0.96798 0.85523 1.37375 0.90028 1.25839 0.98323 1.02034 0.99066 1.70295 1.18482 1.27075 1.43110 0.85153 0.77130 0.79211 0.78195 1.21405 1.22189 1.18951 1.21542 0.96393 0.84618 0.91492 0.89515 1.23243 1.02301 0.93157 0.99087 1.22509 1.01676 0.97913 0.78418 1.48405 1.66286 1.06388 1.12282 1.17082 0.76476 0.82712 0.84546 1.90735 1.52746 1.85528 1.17387 1.21564 1.11921 0.94210 0.91938 1.21466 1.09903 0.90168 1.01663 1.21788 1.04027 0.98390 0.85576 1.46344 1.46347 1.03196 1.10726 1.73439 1.20038 0.97737 1.18608 1.22676 1.04413 0.92791 0.81221 1.21993 1.01171 0.92859 1.00824 1.21722 1.01352 1.00725 0.92323 1.20575 1.03473 0.83797 1.01264 1.22593 1.00085 0.80371 0.99704 0.98726 0.95519 0.95606 0.94313 0.87897 0.91612 0.88504 0.90002 0.82412 0.87306 0.87281 0.90642 0.85749 0.87674 0.91071 0.88242 0.88088 0.94260 0.93224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.50 7.72 127.77 0.99 10.49 16 2 N -0.60 -30.82 2.94 -696.15 -2.05 -32.86 16 3 C -0.26 -14.56 9.66 84.03 0.81 -13.75 16 4 H 0.08 4.25 7.81 -2.91 -0.02 4.23 16 5 C -0.06 -3.31 5.11 84.86 0.43 -2.88 16 6 N -0.94 -57.60 10.50 21.65 0.23 -57.38 16 7 Si 0.98 45.66 29.57 68.60 2.03 47.69 16 8 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 9 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 10 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 11 C 0.17 7.00 3.45 46.18 0.16 7.16 16 12 H 0.09 3.46 7.91 -2.39 -0.02 3.44 16 13 C -0.14 -4.56 6.59 31.99 0.21 -4.35 16 14 C 0.12 3.54 6.15 86.86 0.53 4.07 16 15 N -0.60 -23.06 3.33 -815.32 -2.71 -25.77 16 16 C 0.60 24.38 7.86 86.75 0.68 25.06 16 17 O -0.58 -27.82 17.25 -3.94 -0.07 -27.89 16 18 C -0.04 -1.25 6.97 42.48 0.30 -0.96 16 19 C -0.20 -5.58 10.75 22.30 0.24 -5.35 16 20 C 0.03 0.52 6.57 41.21 0.27 0.79 16 21 N -0.28 -5.37 3.74 -333.28 -1.25 -6.61 16 22 N -0.26 -7.07 9.14 -48.05 -0.44 -7.51 16 23 C 0.11 0.94 7.17 86.34 0.62 1.56 16 24 C -0.13 -0.42 5.92 30.70 0.18 -0.24 16 25 C -0.12 -0.46 5.98 30.79 0.18 -0.28 16 26 C -0.05 -0.48 6.28 30.03 0.19 -0.29 16 27 C 0.10 4.27 6.50 86.73 0.56 4.83 16 28 H -0.01 -0.33 7.36 -2.38 -0.02 -0.35 16 29 H 0.03 1.22 6.13 -2.39 -0.01 1.21 16 30 H 0.03 1.42 7.08 -2.39 -0.02 1.41 16 31 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 32 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.07 2.33 6.14 -2.39 -0.01 2.31 16 34 H 0.10 2.75 6.20 -2.39 -0.01 2.74 16 35 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 36 H 0.16 4.19 8.06 -2.91 -0.02 4.16 16 37 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.07 0.34 8.11 -2.38 -0.02 0.32 16 40 H 0.12 -0.26 8.14 -2.39 -0.02 -0.28 16 41 H 0.10 -0.03 8.14 -2.38 -0.02 -0.05 16 42 H 0.07 0.31 8.12 -2.39 -0.02 0.29 16 43 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.10 0.76 8.14 -2.39 -0.02 0.75 16 45 H 0.04 1.98 7.06 -2.38 -0.02 1.96 16 46 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -78.85 362.04 3.08 -75.77 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.98 Total: 8.69 kcal Atomic # 6 Polarization: 19.52 SS G_CDS: 6.36 Total: 25.88 kcal Atomic # 7 Polarization: -123.92 SS G_CDS: -6.22 Total: -130.14 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.07 Total: -27.89 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -78.85 3.08 -75.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971754321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.504 kcal (2) G-P(sol) polarization free energy of solvation -78.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds