Wall clock time and date at job start Tue Mar 31 2020 04:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40298 * 126.09105 * 2 1 4 4 C 1.31072 * 108.26634 * 179.97438 * 3 2 1 5 5 C 1.39295 * 108.08330 * 0.38440 * 4 3 2 6 6 C 1.34323 * 126.09113 * 180.30324 * 2 1 3 7 7 C 1.50821 * 128.03784 * 359.79775 * 6 2 1 8 8 C 1.53357 * 108.38929 * 196.63494 * 7 6 2 9 9 H 1.09004 * 109.46756 * 70.05789 * 8 7 6 10 10 C 1.50697 * 109.46968 * 190.04612 * 8 7 6 11 11 O 1.21281 * 120.00210 * 359.97438 * 10 8 7 12 12 N 1.34780 * 120.00066 * 180.02562 * 10 8 7 13 13 C 1.46499 * 120.00008 * 180.02562 * 12 10 8 14 14 C 1.52996 * 109.47110 * 179.97438 * 13 12 10 15 15 H 1.08999 * 112.96464 * 53.32531 * 14 13 12 16 16 C 1.53947 * 113.76881 * 184.99906 * 14 13 12 17 17 C 1.53955 * 86.28898 * 137.90732 * 16 14 13 18 18 N 1.47575 * 86.11670 * 336.39293 * 17 16 14 19 19 C 1.36938 * 134.49723 * 204.63536 * 18 17 16 20 20 H 1.07994 * 120.00660 * 180.02562 * 19 18 17 21 21 C 1.38821 * 119.99255 * 0.02562 * 19 18 17 22 22 N 1.31617 * 120.00370 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99886 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47405 * 89.99433 * 23 21 19 25 25 H 1.48492 * 109.47049 * 209.99686 * 23 21 19 26 26 H 1.48508 * 109.46848 * 329.99859 * 23 21 19 27 27 C 1.53107 * 109.50430 * 310.06150 * 8 7 6 28 28 C 1.50832 * 127.90273 * 179.65701 * 5 4 3 29 29 H 1.09002 * 109.47391 * 269.69133 * 1 2 3 30 30 H 1.09001 * 109.46813 * 149.69190 * 1 2 3 31 31 H 1.09004 * 109.47041 * 29.69317 * 1 2 3 32 32 H 1.08005 * 125.95983 * 180.17095 * 4 3 2 33 33 H 1.09008 * 109.67643 * 316.35972 * 7 6 2 34 34 H 1.08997 * 109.68308 * 76.90712 * 7 6 2 35 35 H 0.96998 * 119.99966 * 359.97438 * 12 10 8 36 36 H 1.09003 * 109.47099 * 299.99978 * 13 12 10 37 37 H 1.09003 * 109.46833 * 59.99958 * 13 12 10 38 38 H 1.08997 * 113.74071 * 252.25174 * 16 14 13 39 39 H 1.08999 * 113.74137 * 23.56505 * 16 14 13 40 40 H 1.08998 * 113.76343 * 90.69731 * 17 16 14 41 41 H 1.08998 * 113.76945 * 221.97530 * 17 16 14 42 42 H 0.96994 * 120.00230 * 180.02562 * 22 21 19 43 43 H 1.09002 * 109.46308 * 190.29014 * 27 8 7 44 44 H 1.08996 * 109.46156 * 310.26715 * 27 8 7 45 45 H 1.09004 * 109.68558 * 76.85944 * 28 5 4 46 46 H 1.09004 * 109.68715 * 316.30679 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2914 1.1337 0.0000 4 6 3.5392 0.7325 0.0006 5 6 3.5455 -0.6604 -0.0080 6 6 2.2562 -1.0854 -0.0057 7 6 1.8438 -2.5361 -0.0092 8 6 3.0539 -3.3841 0.4012 9 1 3.2701 -3.2215 1.4571 10 6 2.7476 -4.8414 0.1700 11 8 1.6697 -5.1710 -0.2777 12 7 3.6712 -5.7787 0.4617 13 6 3.3737 -7.1953 0.2365 14 6 4.5808 -8.0414 0.6460 15 1 4.9191 -7.8361 1.6617 16 6 4.4213 -9.5409 0.3364 17 6 5.8851 -9.4963 -0.1384 18 7 5.6660 -8.0530 -0.3541 19 6 6.2393 -7.1049 -1.1590 20 1 5.8863 -6.0848 -1.1277 21 6 7.2744 -7.4553 -2.0152 22 7 7.7049 -8.6985 -2.0530 23 14 8.0561 -6.1624 -3.1136 24 1 9.1933 -5.5281 -2.3997 25 1 8.5491 -6.8034 -4.3590 26 1 7.0471 -5.1276 -3.4554 27 6 4.2697 -2.9791 -0.4366 28 6 4.7399 -1.5816 -0.0178 29 1 -0.3634 -0.0055 1.0276 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5091 32 1 4.4106 1.3706 0.0033 33 1 1.0309 -2.6883 0.7010 34 1 1.5169 -2.8225 -1.0088 35 1 4.5331 -5.5152 0.8202 36 1 2.5080 -7.4841 0.8327 37 1 3.1580 -7.3578 -0.8196 38 1 4.2657 -10.1576 1.2216 39 1 3.7077 -9.7510 -0.4603 40 1 6.6083 -9.7185 0.6462 41 1 6.0668 -10.0568 -1.0554 42 1 8.4283 -8.9432 -2.6510 43 1 5.0750 -3.6964 -0.2784 44 1 3.9961 -2.9671 -1.4916 45 1 5.1767 -1.6272 0.9798 46 1 5.4813 -1.2139 -0.7272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038628362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:46 Heat of formation + Delta-G solvation = 84.363353 kcal Electronic energy + Delta-G solvation = -27000.218276 eV Core-core repulsion = 23313.823666 eV Total energy + Delta-G solvation = -3686.394610 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.67075 -39.67315 -38.00957 -36.15478 -34.15366 -33.76654 -32.20273 -30.37804 -30.01644 -28.00978 -27.55836 -26.72634 -24.11603 -23.38683 -22.56578 -21.89460 -21.03941 -20.08596 -19.11747 -18.73823 -17.43670 -16.65810 -16.28118 -15.76743 -15.67749 -15.27144 -14.84579 -14.52664 -14.26401 -14.10855 -13.72319 -13.62373 -13.53280 -13.20186 -13.05055 -12.96710 -12.74243 -12.55731 -11.95854 -11.85432 -11.65893 -11.44524 -11.13078 -11.04274 -10.93317 -10.80179 -10.74315 -10.59349 -10.56290 -10.02643 -9.77237 -9.63211 -9.37423 -9.30505 -8.81538 -8.61165 -8.28933 -6.91598 -5.78276 -3.10895 1.74420 2.34672 2.70134 2.87780 3.36403 3.41652 3.44131 3.48133 4.34377 4.39607 4.45652 4.60147 4.76903 4.90854 4.92906 4.98370 5.08470 5.16208 5.23330 5.29018 5.30515 5.38175 5.47708 5.54969 5.60021 5.70426 5.77651 5.80839 5.89058 5.91001 6.05799 6.09510 6.21309 6.25950 6.29561 6.38556 6.57592 6.59921 6.69106 6.85738 6.90468 7.22818 7.38966 7.57247 7.59557 7.85017 7.96352 8.50571 9.02105 9.69361 10.57493 11.38472 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.015204 B = 0.003568 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.218022 B = 7846.029997 C = 9279.224305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.369 5.369 3 N -0.306 5.306 4 C 0.055 3.945 5 C -0.241 4.241 6 C 0.089 3.911 7 C -0.034 4.034 8 C -0.098 4.098 9 H 0.100 0.900 10 C 0.516 3.484 11 O -0.553 6.553 12 N -0.711 5.711 13 C 0.123 3.877 14 C 0.126 3.874 15 H 0.049 0.951 16 C -0.156 4.156 17 C 0.159 3.841 18 N -0.602 5.602 19 C -0.219 4.219 20 H 0.079 0.921 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.905 3.095 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C -0.115 4.115 28 C -0.037 4.037 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.182 0.818 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.403 0.597 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.026 0.974 41 H 0.073 0.927 42 H 0.253 0.747 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.575 12.275 7.426 17.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.151 5.151 3 N -0.127 5.127 4 C -0.130 4.130 5 C -0.252 4.252 6 C -0.039 4.039 7 C -0.074 4.074 8 C -0.120 4.120 9 H 0.118 0.882 10 C 0.302 3.698 11 O -0.432 6.432 12 N -0.360 5.360 13 C -0.002 4.002 14 C 0.018 3.982 15 H 0.066 0.934 16 C -0.195 4.195 17 C 0.034 3.966 18 N -0.328 5.328 19 C -0.347 4.347 20 H 0.097 0.903 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.736 3.264 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.205 1.205 27 C -0.152 4.152 28 C -0.075 4.075 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.199 0.801 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.238 0.762 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.044 0.956 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.070 13.157 6.844 19.122 hybrid contribution 1.528 0.240 -0.389 1.595 sum -10.542 13.397 6.456 18.229 Atomic orbital electron populations 1.21857 0.74457 1.04530 1.03346 1.48160 1.06394 1.03460 1.57056 1.77493 1.01578 1.07546 1.26120 1.23565 0.95165 0.94508 0.99753 1.19959 0.94229 0.93828 1.17212 1.20920 0.91100 0.90601 1.01300 1.20065 0.97478 0.85822 1.03997 1.21259 0.96552 0.91695 1.02458 0.88171 1.20370 0.84290 0.87500 0.77660 1.90662 1.24196 1.82816 1.45519 1.45961 1.17915 1.07164 1.64991 1.21765 0.97722 0.78989 1.01690 1.22498 0.88720 0.93518 0.93439 0.93356 1.23776 1.00823 0.94870 1.00051 1.22192 0.90084 0.85943 0.98425 1.46072 1.38490 1.06577 1.41690 1.18934 1.12571 0.89685 1.13475 0.90307 1.24756 0.98974 0.96499 1.00088 1.69811 1.30049 1.16032 1.40761 0.86227 0.79385 0.80621 0.80215 1.21609 1.21707 1.20548 1.21634 0.96306 0.97188 1.00120 1.19961 0.93906 0.91968 1.01714 0.90763 0.89373 0.89333 0.80124 0.89875 0.88666 0.76225 0.92245 0.90969 0.92842 0.90527 0.95611 0.90855 0.93694 0.90009 0.90916 0.91010 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.78 11.32 59.85 0.68 1.45 16 2 N -0.37 -4.39 4.00 -63.88 -0.26 -4.64 16 3 N -0.31 -4.05 12.59 30.55 0.38 -3.66 16 4 C 0.05 0.65 12.00 -17.48 -0.21 0.44 16 5 C -0.24 -2.90 5.91 -105.05 -0.62 -3.52 16 6 C 0.09 1.08 6.73 -82.33 -0.55 0.53 16 7 C -0.03 -0.40 4.56 -27.64 -0.13 -0.52 16 8 C -0.10 -1.17 2.50 -91.53 -0.23 -1.40 16 9 H 0.10 1.04 8.12 -51.93 -0.42 0.62 16 10 C 0.52 7.90 7.15 -10.99 -0.08 7.82 16 11 O -0.55 -10.17 15.83 5.56 0.09 -10.09 16 12 N -0.71 -11.08 5.34 -60.29 -0.32 -11.40 16 13 C 0.12 2.11 5.54 -4.04 -0.02 2.09 16 14 C 0.13 2.31 4.33 -66.86 -0.29 2.02 16 15 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 16 C -0.16 -2.76 7.86 -25.80 -0.20 -2.97 16 17 C 0.16 3.55 7.51 -2.97 -0.02 3.53 16 18 N -0.60 -14.15 3.57 -170.74 -0.61 -14.76 16 19 C -0.22 -5.66 10.51 -15.06 -0.16 -5.82 16 20 H 0.08 1.93 7.80 -52.49 -0.41 1.52 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 22 N -0.92 -26.47 11.39 55.49 0.63 -25.84 16 23 Si 0.91 21.45 29.55 -169.99 -5.02 16.43 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 C -0.11 -1.39 5.17 -26.53 -0.14 -1.53 16 28 C -0.04 -0.40 6.28 -27.68 -0.17 -0.57 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.57 7.90 -51.93 -0.41 0.16 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.18 1.57 8.06 -52.48 -0.42 1.15 16 33 H 0.08 0.88 8.14 -51.92 -0.42 0.46 16 34 H 0.10 1.21 7.79 -51.93 -0.40 0.80 16 35 H 0.40 5.90 7.80 -40.82 -0.32 5.58 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 1.84 7.16 -51.93 -0.37 1.46 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.08 1.03 7.30 -51.93 -0.38 0.66 16 44 H 0.07 0.98 8.11 -51.93 -0.42 0.56 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 374.34 15.07 5.64 5.64 Total: -1.00 -33.06 374.34 -9.05 -42.11 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -7.34 Total: 4.93 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -2.24 Total: 1.28 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -0.17 Total: -60.30 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.06 -9.05 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038628362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.478 kcal (2) G-P(sol) polarization free energy of solvation -33.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds