Wall clock time and date at job start Tue Mar 31 2020 04:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40298 * 126.09105 * 2 1 4 4 C 1.31072 * 108.26634 * 179.97438 * 3 2 1 5 5 C 1.39295 * 108.08330 * 0.38440 * 4 3 2 6 6 C 1.34323 * 126.09113 * 180.30324 * 2 1 3 7 7 C 1.50821 * 128.03784 * 359.79775 * 6 2 1 8 8 C 1.53357 * 108.38929 * 196.63494 * 7 6 2 9 9 H 1.09004 * 109.46756 * 70.05789 * 8 7 6 10 10 C 1.50697 * 109.46968 * 190.04612 * 8 7 6 11 11 O 1.21281 * 120.00210 * 359.97438 * 10 8 7 12 12 N 1.34780 * 120.00066 * 180.02562 * 10 8 7 13 13 C 1.46499 * 120.00008 * 180.02562 * 12 10 8 14 14 C 1.52996 * 109.47110 * 179.97438 * 13 12 10 15 15 H 1.08999 * 112.96464 * 53.32531 * 14 13 12 16 16 C 1.53947 * 113.76881 * 184.99906 * 14 13 12 17 17 C 1.53955 * 86.28898 * 137.90732 * 16 14 13 18 18 N 1.47575 * 86.11670 * 336.39293 * 17 16 14 19 19 C 1.36938 * 134.49723 * 204.63536 * 18 17 16 20 20 H 1.07994 * 120.00660 * 180.02562 * 19 18 17 21 21 C 1.38821 * 119.99255 * 0.02562 * 19 18 17 22 22 N 1.31617 * 120.00370 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99886 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47405 * 89.99433 * 23 21 19 25 25 H 1.48492 * 109.47049 * 209.99686 * 23 21 19 26 26 H 1.48508 * 109.46848 * 329.99859 * 23 21 19 27 27 C 1.53107 * 109.50430 * 310.06150 * 8 7 6 28 28 C 1.50832 * 127.90273 * 179.65701 * 5 4 3 29 29 H 1.09002 * 109.47391 * 269.69133 * 1 2 3 30 30 H 1.09001 * 109.46813 * 149.69190 * 1 2 3 31 31 H 1.09004 * 109.47041 * 29.69317 * 1 2 3 32 32 H 1.08005 * 125.95983 * 180.17095 * 4 3 2 33 33 H 1.09008 * 109.67643 * 316.35972 * 7 6 2 34 34 H 1.08997 * 109.68308 * 76.90712 * 7 6 2 35 35 H 0.96998 * 119.99966 * 359.97438 * 12 10 8 36 36 H 1.09003 * 109.47099 * 299.99978 * 13 12 10 37 37 H 1.09003 * 109.46833 * 59.99958 * 13 12 10 38 38 H 1.08997 * 113.74071 * 252.25174 * 16 14 13 39 39 H 1.08999 * 113.74137 * 23.56505 * 16 14 13 40 40 H 1.08998 * 113.76343 * 90.69731 * 17 16 14 41 41 H 1.08998 * 113.76945 * 221.97530 * 17 16 14 42 42 H 0.96994 * 120.00230 * 180.02562 * 22 21 19 43 43 H 1.09002 * 109.46308 * 190.29014 * 27 8 7 44 44 H 1.08996 * 109.46156 * 310.26715 * 27 8 7 45 45 H 1.09004 * 109.68558 * 76.85944 * 28 5 4 46 46 H 1.09004 * 109.68715 * 316.30679 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2914 1.1337 0.0000 4 6 3.5392 0.7325 0.0006 5 6 3.5455 -0.6604 -0.0080 6 6 2.2562 -1.0854 -0.0057 7 6 1.8438 -2.5361 -0.0092 8 6 3.0539 -3.3841 0.4012 9 1 3.2701 -3.2215 1.4571 10 6 2.7476 -4.8414 0.1700 11 8 1.6697 -5.1710 -0.2777 12 7 3.6712 -5.7787 0.4617 13 6 3.3737 -7.1953 0.2365 14 6 4.5808 -8.0414 0.6460 15 1 4.9191 -7.8361 1.6617 16 6 4.4213 -9.5409 0.3364 17 6 5.8851 -9.4963 -0.1384 18 7 5.6660 -8.0530 -0.3541 19 6 6.2393 -7.1049 -1.1590 20 1 5.8863 -6.0848 -1.1277 21 6 7.2744 -7.4553 -2.0152 22 7 7.7049 -8.6985 -2.0530 23 14 8.0561 -6.1624 -3.1136 24 1 9.1933 -5.5281 -2.3997 25 1 8.5491 -6.8034 -4.3590 26 1 7.0471 -5.1276 -3.4554 27 6 4.2697 -2.9791 -0.4366 28 6 4.7399 -1.5816 -0.0178 29 1 -0.3634 -0.0055 1.0276 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5091 32 1 4.4106 1.3706 0.0033 33 1 1.0309 -2.6883 0.7010 34 1 1.5169 -2.8225 -1.0088 35 1 4.5331 -5.5152 0.8202 36 1 2.5080 -7.4841 0.8327 37 1 3.1580 -7.3578 -0.8196 38 1 4.2657 -10.1576 1.2216 39 1 3.7077 -9.7510 -0.4603 40 1 6.6083 -9.7185 0.6462 41 1 6.0668 -10.0568 -1.0554 42 1 8.4283 -8.9432 -2.6510 43 1 5.0750 -3.6964 -0.2784 44 1 3.9961 -2.9671 -1.4916 45 1 5.1767 -1.6272 0.9798 46 1 5.4813 -1.2139 -0.7272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038628362.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:45 Heat of formation + Delta-G solvation = 63.168965 kcal Electronic energy + Delta-G solvation = -27001.137334 eV Core-core repulsion = 23313.823666 eV Total energy + Delta-G solvation = -3687.313668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.55208 -40.91810 -39.59449 -37.16900 -35.51107 -34.59191 -34.14882 -31.27515 -31.00690 -29.83246 -28.96947 -27.48263 -25.24521 -25.22443 -23.61723 -23.22915 -21.88910 -21.34973 -20.69834 -19.68432 -18.78710 -18.09492 -17.29986 -17.07058 -17.01785 -16.55727 -16.14590 -15.79994 -15.51880 -15.22085 -15.09514 -14.91584 -14.52123 -14.33027 -14.29317 -13.89175 -13.69344 -13.47305 -13.25360 -13.22258 -12.91754 -12.79739 -12.68593 -12.59248 -12.51448 -12.30030 -11.88548 -11.85208 -11.67819 -11.51441 -11.46135 -11.28489 -10.78825 -10.66602 -10.22752 -9.95535 -9.16085 -8.83630 -7.81838 -5.13092 0.86480 1.47898 1.49380 1.56420 1.57628 1.66135 1.83050 2.27663 2.52147 3.34620 3.42979 3.49133 3.57518 3.74824 3.81403 3.97049 4.03825 4.16474 4.20947 4.33426 4.34911 4.39401 4.40402 4.44027 4.57257 4.62386 4.65247 4.69128 4.76015 4.91163 4.91376 4.94929 5.05737 5.09118 5.14941 5.15902 5.29139 5.38221 5.39604 5.51852 5.66583 5.74878 5.79283 6.02591 6.09096 6.61597 6.72806 7.00364 7.27998 7.71281 8.65534 9.35336 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.015204 B = 0.003568 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.218022 B = 7846.029997 C = 9279.224305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.374 5.374 3 N -0.334 5.334 4 C 0.049 3.951 5 C -0.252 4.252 6 C 0.080 3.920 7 C -0.027 4.027 8 C -0.087 4.087 9 H 0.124 0.876 10 C 0.517 3.483 11 O -0.585 6.585 12 N -0.709 5.709 13 C 0.132 3.868 14 C 0.134 3.866 15 H 0.073 0.927 16 C -0.132 4.132 17 C 0.149 3.851 18 N -0.628 5.628 19 C -0.208 4.208 20 H 0.090 0.910 21 C -0.072 4.072 22 N -0.956 5.956 23 Si 0.962 3.038 24 H -0.285 1.285 25 H -0.304 1.304 26 H -0.269 1.269 27 C -0.112 4.112 28 C -0.031 4.031 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.206 0.794 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.409 0.591 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.021 0.979 41 H 0.036 0.964 42 H 0.243 0.757 43 H 0.077 0.923 44 H 0.054 0.946 45 H 0.088 0.912 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.488 13.664 9.131 20.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.156 5.156 3 N -0.156 5.156 4 C -0.134 4.134 5 C -0.264 4.264 6 C -0.049 4.049 7 C -0.066 4.066 8 C -0.108 4.108 9 H 0.142 0.858 10 C 0.304 3.696 11 O -0.466 6.466 12 N -0.359 5.359 13 C 0.007 3.993 14 C 0.028 3.972 15 H 0.090 0.910 16 C -0.171 4.171 17 C 0.024 3.976 18 N -0.355 5.355 19 C -0.336 4.336 20 H 0.108 0.892 21 C -0.264 4.264 22 N -0.607 5.607 23 Si 0.792 3.208 24 H -0.212 1.212 25 H -0.232 1.232 26 H -0.194 1.194 27 C -0.150 4.150 28 C -0.069 4.069 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.114 0.886 32 H 0.222 0.778 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.245 0.755 36 H 0.098 0.902 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.039 0.961 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.096 0.904 44 H 0.072 0.928 45 H 0.107 0.893 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.015 14.576 8.585 21.344 hybrid contribution 1.720 -0.204 -0.877 1.942 sum -11.294 14.373 7.709 19.838 Atomic orbital electron populations 1.22152 0.72653 1.05537 1.04678 1.48474 1.07579 1.03008 1.56542 1.77445 1.02407 1.08584 1.27162 1.24007 0.95558 0.94866 0.99004 1.20198 0.94594 0.94220 1.17346 1.21015 0.91497 0.90751 1.01633 1.19965 0.97575 0.85571 1.03490 1.21218 0.96647 0.89173 1.03808 0.85780 1.20890 0.83533 0.88633 0.76549 1.90651 1.25567 1.83510 1.46867 1.45937 1.18348 1.06663 1.64968 1.21525 0.97771 0.79924 1.00050 1.22660 0.87305 0.94208 0.93053 0.91017 1.23573 0.97090 0.95090 1.01345 1.22156 0.93239 0.85355 0.96894 1.46424 1.39533 1.06735 1.42797 1.19343 1.11199 0.90558 1.12532 0.89220 1.25486 1.00549 0.98078 1.02295 1.69999 1.30857 1.17786 1.42023 0.85304 0.78756 0.78692 0.78063 1.21160 1.23177 1.19354 1.21594 0.96123 0.98182 0.99082 1.19949 0.93601 0.90534 1.02797 0.89245 0.88182 0.88593 0.77762 0.88767 0.90111 0.75495 0.90176 0.94143 0.88903 0.90521 0.96076 0.94514 0.94779 0.90418 0.92758 0.89328 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.25 11.32 127.77 1.45 2.70 16 2 N -0.37 -8.32 4.00 -356.01 -1.42 -9.74 16 3 N -0.33 -8.36 12.59 -57.27 -0.72 -9.08 16 4 C 0.05 1.08 12.00 85.06 1.02 2.10 16 5 C -0.25 -5.56 5.91 -20.14 -0.12 -5.68 16 6 C 0.08 1.81 6.73 41.64 0.28 2.09 16 7 C -0.03 -0.58 4.56 30.01 0.14 -0.44 16 8 C -0.09 -1.90 2.50 -11.39 -0.03 -1.93 16 9 H 0.12 2.17 8.12 -2.38 -0.02 2.15 16 10 C 0.52 14.92 7.15 87.66 0.63 15.55 16 11 O -0.59 -20.84 15.83 -3.03 -0.05 -20.89 16 12 N -0.71 -20.64 5.34 -463.06 -2.47 -23.11 16 13 C 0.13 4.28 5.54 86.38 0.48 4.76 16 14 C 0.13 4.60 4.33 45.09 0.20 4.79 16 15 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 16 C -0.13 -4.39 7.86 31.26 0.25 -4.14 16 17 C 0.15 6.66 7.51 86.48 0.65 7.31 16 18 N -0.63 -29.13 3.57 -694.09 -2.48 -31.61 16 19 C -0.21 -10.66 10.51 84.04 0.88 -9.78 16 20 H 0.09 4.28 7.80 -2.91 -0.02 4.26 16 21 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 22 N -0.96 -56.68 11.39 21.65 0.25 -56.43 16 23 Si 0.96 44.57 29.55 68.60 2.03 46.60 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 25 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 27 C -0.11 -2.52 5.17 30.72 0.16 -2.36 16 28 C -0.03 -0.58 6.28 29.98 0.19 -0.40 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 1.13 7.90 -2.39 -0.02 1.11 16 31 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.21 3.10 8.06 -2.91 -0.02 3.08 16 33 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.08 1.99 7.79 -2.39 -0.02 1.97 16 35 H 0.41 10.95 7.80 -92.71 -0.72 10.23 16 36 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.09 2.40 8.14 -2.39 -0.02 2.39 16 39 H 0.08 2.56 8.10 -2.39 -0.02 2.54 16 40 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.04 1.90 7.16 -2.39 -0.02 1.88 16 42 H 0.24 14.24 8.31 -92.71 -0.77 13.46 16 43 H 0.08 1.81 7.30 -2.39 -0.02 1.79 16 44 H 0.05 1.41 8.11 -2.39 -0.02 1.39 16 45 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 46 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -72.29 374.34 2.01 -70.28 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.26 Total: 22.87 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 6.63 Total: 11.10 kcal Atomic # 7 Polarization: -123.12 SS G_CDS: -6.86 Total: -129.97 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.05 Total: -20.89 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -72.29 2.01 -70.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038628362.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.450 kcal (2) G-P(sol) polarization free energy of solvation -72.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds