Wall clock time and date at job start Tue Mar 31 2020 04:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.35403 * 126.43998 * 264.68921 * 3 2 1 5 5 C 1.35557 * 107.15815 * 179.84399 * 4 3 2 6 6 N 1.33102 * 108.35261 * 0.42621 * 5 4 3 7 7 C 1.31614 * 109.09266 * 359.73170 * 6 5 4 8 8 C 1.47415 * 125.86042 * 179.97438 * 7 6 5 9 9 O 1.21604 * 119.99745 * 180.02562 * 8 7 6 10 10 N 1.34774 * 119.99995 * 0.03045 * 8 7 6 11 11 C 1.47552 * 125.67437 * 359.68767 * 10 8 7 12 12 C 1.55440 * 104.87827 * 156.03957 * 11 10 8 13 13 C 1.53648 * 101.31259 * 35.82842 * 12 11 10 14 14 C 1.53653 * 111.42018 * 87.06721 * 13 12 11 15 15 C 1.55177 * 101.42078 * 155.02392 * 14 13 12 16 16 N 1.47553 * 105.00905 * 324.50645 * 15 14 13 17 17 C 1.36942 * 125.67582 * 203.82705 * 16 15 14 18 18 H 1.08004 * 119.99569 * 180.02562 * 17 16 15 19 19 C 1.38801 * 119.99774 * 0.04143 * 17 16 15 20 20 N 1.31621 * 120.00270 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99858 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47305 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47194 * 120.00307 * 21 19 17 24 24 H 1.48503 * 109.47312 * 240.00085 * 21 19 17 25 25 C 1.47408 * 108.65003 * 23.86686 * 16 15 14 26 26 C 1.47405 * 125.66839 * 180.02562 * 10 8 7 27 27 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 28 28 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 29 29 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 31 31 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 32 32 H 1.07997 * 126.41769 * 359.96523 * 4 3 2 33 33 H 1.08001 * 125.82816 * 180.15049 * 5 4 3 34 34 H 1.09007 * 110.33751 * 275.02341 * 11 10 8 35 35 H 1.08993 * 110.33916 * 37.26209 * 11 10 8 36 36 H 1.08999 * 111.25059 * 277.75159 * 12 11 10 37 37 H 1.09006 * 110.94829 * 153.77030 * 12 11 10 38 38 H 1.09002 * 111.03168 * 273.06122 * 14 13 12 39 39 H 1.08998 * 111.03453 * 36.98586 * 14 13 12 40 40 H 1.09007 * 110.33301 * 205.62259 * 15 14 13 41 41 H 1.09007 * 110.41887 * 83.43924 * 15 14 13 42 42 H 0.97002 * 119.99909 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.98197 * 238.53733 * 25 16 15 44 44 H 1.08995 * 109.99050 * 117.23021 * 25 16 15 45 45 H 1.09005 * 109.98625 * 301.44479 * 26 10 8 46 46 H 1.08999 * 109.99313 * 62.71873 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3815 2.1059 -1.0846 5 6 2.7657 3.3272 -0.6392 6 7 2.6492 3.3456 0.6866 7 6 2.1986 2.1785 1.0953 8 6 1.9344 1.7966 2.4944 9 8 1.5174 0.6838 2.7525 10 7 2.1549 2.6808 3.4874 11 6 2.6631 4.0557 3.3182 12 6 2.1655 4.8226 4.5753 13 6 2.2691 3.7331 5.6537 14 6 3.6718 3.6947 6.2797 15 6 3.3712 3.0733 7.6695 16 7 2.0522 3.6129 8.0521 17 6 1.5788 3.7324 9.3315 18 1 0.5948 4.1416 9.5071 19 6 2.3636 3.3280 10.4025 20 7 3.5631 2.8301 10.1884 21 14 1.7181 3.4916 12.1477 22 1 0.3534 4.0763 12.1180 23 1 1.6681 2.1511 12.7848 24 1 2.6196 4.3771 12.9280 25 6 1.3286 4.0010 6.8279 26 6 1.9350 2.4327 4.9237 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.3659 1.7738 -2.1121 33 1 3.1118 4.1445 -1.2546 34 1 3.7524 4.0547 3.2784 35 1 2.2506 4.5034 2.4141 36 1 1.1348 5.1553 4.4529 37 1 2.8210 5.6630 4.8040 38 1 4.3406 3.0565 5.7021 39 1 4.0827 4.6992 6.3808 40 1 4.1288 3.3770 8.3921 41 1 3.3300 1.9863 7.5992 42 1 4.1117 2.5478 10.9370 43 1 1.0729 5.0599 6.8662 44 1 0.4236 3.4023 6.7244 45 1 0.8936 2.1636 5.1002 46 1 2.5899 1.6324 5.2682 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041240310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:39:02 Heat of formation + Delta-G solvation = 68.315064 kcal Electronic energy + Delta-G solvation = -27324.837661 eV Core-core repulsion = 23637.747145 eV Total energy + Delta-G solvation = -3687.090516 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.48327 -40.04336 -38.23655 -35.86814 -35.07026 -32.70502 -30.86934 -30.46764 -29.78494 -29.01650 -28.18176 -25.88977 -24.51851 -23.93843 -22.59329 -22.05858 -21.51220 -20.26068 -19.26655 -18.71654 -17.41440 -16.77474 -16.48006 -16.12303 -15.57959 -15.14114 -14.85478 -14.75486 -14.33073 -14.06588 -13.91747 -13.75678 -13.71234 -13.08848 -12.86715 -12.66666 -12.46676 -12.34246 -11.97541 -11.86770 -11.69653 -11.61575 -11.29048 -11.14444 -10.90210 -10.78056 -10.33319 -10.16080 -10.14043 -10.02963 -9.96589 -9.78649 -9.69727 -9.43343 -8.84611 -8.62010 -8.44469 -6.79913 -5.62075 -3.03419 1.24335 2.21619 2.46754 3.12617 3.35048 3.42091 3.47584 3.50072 4.14179 4.35527 4.46592 4.51727 4.68633 4.83900 4.90865 4.95603 5.05871 5.10139 5.18572 5.33598 5.42787 5.46423 5.51834 5.54658 5.77726 5.79320 5.91594 5.94841 6.00001 6.08242 6.16104 6.18172 6.28621 6.33516 6.39165 6.47202 6.59323 6.66314 6.72209 6.79949 6.87487 7.48762 7.55334 7.63057 7.66088 7.89001 8.11003 8.38991 9.25163 9.85887 10.51192 11.41971 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.027989 B = 0.002849 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.161497 B = 9826.603254 C =10310.287214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 N -0.414 5.414 4 C -0.034 4.034 5 C -0.031 4.031 6 N -0.443 5.443 7 C 0.151 3.849 8 C 0.613 3.387 9 O -0.545 6.545 10 N -0.590 5.590 11 C 0.103 3.897 12 C -0.120 4.120 13 C -0.082 4.082 14 C -0.130 4.130 15 C 0.152 3.848 16 N -0.605 5.605 17 C -0.220 4.220 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.922 5.922 21 Si 0.913 3.087 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.152 3.848 26 C 0.131 3.869 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.180 0.820 33 H 0.177 0.823 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.012 0.988 42 H 0.251 0.749 43 H 0.031 0.969 44 H 0.024 0.976 45 H 0.072 0.928 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.740 -0.913 -24.643 24.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.026 4.026 3 N -0.095 5.095 4 C -0.172 4.172 5 C -0.184 4.184 6 N -0.164 5.164 7 C -0.108 4.108 8 C 0.399 3.601 9 O -0.423 6.423 10 N -0.322 5.322 11 C -0.019 4.019 12 C -0.158 4.158 13 C -0.083 4.083 14 C -0.169 4.169 15 C 0.028 3.972 16 N -0.331 5.331 17 C -0.348 4.348 18 H 0.096 0.904 19 C -0.208 4.208 20 N -0.571 5.571 21 Si 0.744 3.256 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.025 3.975 26 C 0.010 3.990 27 H 0.088 0.912 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.198 0.802 33 H 0.194 0.806 34 H 0.088 0.912 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.123 0.877 41 H 0.030 0.970 42 H 0.062 0.938 43 H 0.049 0.951 44 H 0.041 0.959 45 H 0.091 0.909 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.820 -1.146 -23.742 23.839 hybrid contribution -0.450 -0.665 0.134 0.814 sum -2.270 -1.811 -23.608 23.786 Atomic orbital electron populations 1.22060 0.93498 1.03452 1.03017 1.22131 0.96402 0.78770 1.05332 1.45280 1.45104 1.12967 1.06133 1.22889 1.07110 0.94158 0.93035 1.22469 1.07281 0.97396 0.91274 1.70329 1.15392 1.18505 1.12183 1.22618 1.09641 0.88453 0.90125 1.16033 0.78705 0.83897 0.81431 1.90799 1.47762 1.20391 1.83349 1.48290 1.62779 1.14463 1.06659 1.22720 0.99196 0.80369 0.99604 1.22750 1.01978 0.97512 0.93582 1.21549 0.98789 0.93129 0.94803 1.22910 0.93425 1.01230 0.99340 1.21993 0.89578 0.94462 0.91204 1.44645 1.14556 1.73414 1.00464 1.19121 0.99586 1.34885 0.81238 0.90450 1.24779 0.96690 1.01287 0.98003 1.69817 1.09785 1.48396 1.29086 0.86009 0.77803 0.77234 0.84517 1.20557 1.21823 1.21788 1.21093 0.93258 0.97481 0.85634 1.21947 1.01844 0.98095 0.77135 0.91225 0.92358 0.90299 0.89048 0.87141 0.80238 0.80627 0.91200 0.88281 0.90806 0.89583 0.92317 0.91605 0.87681 0.97035 0.93835 0.95149 0.95861 0.90935 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 10.23 37.16 0.38 -0.96 16 2 C 0.10 0.83 6.18 -4.04 -0.02 0.80 16 3 N -0.41 -4.49 2.76 -114.58 -0.32 -4.80 16 4 C -0.03 -0.29 11.53 -16.93 -0.20 -0.48 16 5 C -0.03 -0.31 11.85 -17.96 -0.21 -0.52 16 6 N -0.44 -5.73 8.28 -11.26 -0.09 -5.83 16 7 C 0.15 2.08 7.64 -154.52 -1.18 0.90 16 8 C 0.61 9.80 7.85 -12.52 -0.10 9.70 16 9 O -0.55 -9.62 14.85 5.27 0.08 -9.54 16 10 N -0.59 -9.25 3.34 -171.96 -0.57 -9.82 16 11 C 0.10 1.41 6.09 -2.17 -0.01 1.39 16 12 C -0.12 -1.66 5.94 -25.10 -0.15 -1.81 16 13 C -0.08 -1.41 0.61 -154.02 -0.09 -1.50 16 14 C -0.13 -2.44 5.85 -25.24 -0.15 -2.59 16 15 C 0.15 3.69 5.85 -2.31 -0.01 3.68 16 16 N -0.60 -15.45 3.41 -170.41 -0.58 -16.03 16 17 C -0.22 -6.15 10.28 -15.06 -0.15 -6.30 16 18 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 19 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 20 N -0.92 -27.02 10.09 55.49 0.56 -26.46 16 21 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 C 0.15 3.13 6.51 -3.64 -0.02 3.11 16 26 C 0.13 2.26 6.02 -3.64 -0.02 2.24 16 27 H 0.07 0.77 7.86 -51.93 -0.41 0.37 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.51 8.13 -51.93 -0.42 0.08 16 31 H 0.11 1.18 6.64 -51.93 -0.34 0.83 16 32 H 0.18 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.18 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 35 H 0.10 1.31 6.17 -51.93 -0.32 0.99 16 36 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 37 H 0.09 1.11 7.78 -51.93 -0.40 0.70 16 38 H 0.06 1.02 7.94 -51.93 -0.41 0.61 16 39 H 0.07 1.19 7.82 -51.93 -0.41 0.79 16 40 H 0.11 2.87 5.89 -51.93 -0.31 2.57 16 41 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.03 0.62 7.86 -51.93 -0.41 0.21 16 44 H 0.02 0.49 7.41 -51.93 -0.39 0.10 16 45 H 0.07 1.30 7.44 -51.93 -0.39 0.91 16 46 H 0.07 1.40 7.78 -51.93 -0.40 1.00 16 LS Contribution 363.13 15.07 5.47 5.47 Total: -1.00 -32.80 363.13 -9.63 -42.43 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.11 Total: 0.16 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -2.04 Total: 7.21 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -1.00 Total: -62.94 kcal Atomic # 8 Polarization: -9.62 SS G_CDS: 0.08 Total: -9.54 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.80 -9.63 -42.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041240310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.747 kcal (2) G-P(sol) polarization free energy of solvation -32.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds