Wall clock time and date at job start Tue Mar 31 2020 04:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.35040 * 126.39987 * 2 1 4 4 N 1.30504 * 108.70191 * 179.97438 * 3 2 1 5 5 C 1.34124 * 109.25580 * 359.75491 * 4 3 2 6 6 C 1.34677 * 108.01843 * 0.39871 * 5 4 3 7 7 C 1.50696 * 126.58974 * 179.87596 * 6 5 4 8 8 C 1.53000 * 109.47331 * 84.68424 * 7 6 5 9 9 C 1.50696 * 109.47331 * 180.02562 * 8 7 6 10 10 O 1.21275 * 119.99860 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99986 * 180.02562 * 9 8 7 12 12 C 1.47348 * 125.52428 * 0.02562 * 11 9 8 13 13 C 1.54941 * 104.90115 * 156.69778 * 12 11 9 14 14 C 1.54790 * 101.45733 * 37.25589 * 13 12 11 15 15 H 1.08998 * 112.84581 * 86.23432 * 14 13 12 16 16 C 1.53513 * 109.68503 * 212.92403 * 14 13 12 17 17 N 1.46654 * 107.05261 * 84.08589 * 16 14 13 18 18 C 1.36933 * 125.28918 * 197.39828 * 17 16 14 19 19 H 1.07997 * 120.00541 * 0.02562 * 18 17 16 20 20 C 1.38816 * 119.99737 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00216 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99711 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47269 * 60.00422 * 22 20 18 24 24 H 1.48505 * 109.46970 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47341 * 299.99798 * 22 20 18 26 26 C 1.46495 * 109.42081 * 17.38307 * 17 16 14 27 27 C 1.47369 * 125.54385 * 179.97438 * 11 9 8 28 28 H 1.08991 * 112.75684 * 56.18688 * 27 11 9 29 29 H 1.09002 * 109.47084 * 270.00173 * 1 2 3 30 30 H 1.09001 * 109.46478 * 30.00132 * 1 2 3 31 31 H 1.08991 * 109.46888 * 150.00248 * 1 2 3 32 32 H 1.08003 * 125.65281 * 0.02562 * 3 2 1 33 33 H 1.07998 * 125.99270 * 180.24604 * 5 4 3 34 34 H 1.08998 * 109.47151 * 324.68558 * 7 6 5 35 35 H 1.09000 * 109.47248 * 204.68507 * 7 6 5 36 36 H 1.09005 * 109.47100 * 59.99635 * 8 7 6 37 37 H 1.09000 * 109.47023 * 300.00221 * 8 7 6 38 38 H 1.09003 * 110.35249 * 37.84097 * 12 11 9 39 39 H 1.09006 * 110.35021 * 275.55326 * 12 11 9 40 40 H 1.09001 * 111.03421 * 279.21110 * 13 12 11 41 41 H 1.09001 * 111.03134 * 155.29985 * 13 12 11 42 42 H 1.08997 * 109.92402 * 324.73693 * 16 14 13 43 43 H 1.09000 * 109.91813 * 203.43637 * 16 14 13 44 44 H 0.96998 * 120.00139 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.71712 * 117.76499 * 26 17 16 46 46 H 1.09001 * 109.71175 * 238.36286 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2664 1.0869 0.0000 4 7 3.5096 0.6902 0.0006 5 6 3.5461 -0.6505 0.0063 6 6 2.2772 -1.1018 0.0006 7 6 1.8363 -2.5428 0.0013 8 6 1.8073 -3.0666 1.4385 9 6 1.3670 -4.5078 1.4392 10 8 1.1029 -5.0616 0.3931 11 7 1.2666 -5.1813 2.6024 12 6 1.5555 -4.6306 3.9382 13 6 0.7510 -5.5207 4.9186 14 6 0.8992 -6.9142 4.2611 15 1 1.8081 -7.4321 4.5673 16 6 -0.3698 -7.7413 4.5104 17 7 -1.3382 -7.3656 3.4751 18 6 -2.6852 -7.6064 3.5272 19 1 -3.1110 -8.1108 4.3819 20 6 -3.5035 -7.2021 2.4813 21 7 -2.9845 -6.5877 1.4393 22 14 -5.3411 -7.5299 2.5527 23 1 -5.9187 -6.8538 3.7419 24 1 -5.9858 -7.0045 1.3223 25 1 -5.5797 -8.9923 2.6500 26 6 -0.6406 -6.6925 2.3768 27 6 0.8494 -6.5875 2.7449 28 1 1.4635 -7.2710 2.1587 29 1 -0.3633 0.0000 1.0277 30 1 -0.3632 0.8900 -0.5139 31 1 -0.3633 -0.8899 -0.5138 32 1 1.9336 2.1144 0.0004 33 1 4.4368 -1.2612 0.0119 34 1 2.5350 -3.1369 -0.5878 35 1 0.8394 -2.6180 -0.4330 36 1 1.1086 -2.4726 2.0277 37 1 2.8042 -2.9915 1.8728 38 1 1.2191 -3.5958 4.0025 39 1 2.6220 -4.6976 4.1533 40 1 -0.2947 -5.2153 4.9561 41 1 1.1962 -5.5083 5.9134 42 1 -0.7737 -7.5135 5.4968 43 1 -0.1406 -8.8043 4.4363 44 1 -3.5562 -6.3055 0.7083 45 1 -0.7531 -7.2714 1.4601 46 1 -1.0554 -5.6945 2.2346 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076517536.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:55:56 Heat of formation + Delta-G solvation = 60.693280 kcal Electronic energy + Delta-G solvation = -27247.185550 eV Core-core repulsion = 23559.764528 eV Total energy + Delta-G solvation = -3687.421022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.19218 -40.08477 -37.97214 -34.90272 -34.31235 -33.57434 -32.24254 -30.65461 -29.35203 -28.33513 -27.12573 -26.74286 -24.77934 -24.12174 -22.40466 -21.52853 -20.54148 -19.90747 -19.49783 -18.56666 -17.33395 -16.93656 -16.48027 -15.87335 -15.80485 -15.26112 -14.99926 -14.53826 -14.23627 -13.81572 -13.67309 -13.48795 -13.29883 -13.15421 -13.01659 -12.80255 -12.53517 -12.45123 -12.15116 -12.01954 -11.73574 -11.44384 -11.18469 -11.16279 -10.99776 -10.77520 -10.53268 -10.24110 -10.04265 -10.03015 -9.88105 -9.71323 -9.69982 -9.42682 -8.58792 -8.41936 -8.17529 -6.81409 -5.67948 -3.04513 1.90441 2.65489 3.02457 3.06378 3.34766 3.39578 3.43903 3.45467 4.44673 4.49588 4.54969 4.60238 4.77926 4.84372 4.90280 4.95543 5.01142 5.13534 5.21667 5.27479 5.35730 5.45105 5.48830 5.52922 5.55849 5.62909 5.73409 5.79856 5.81006 5.92859 6.03568 6.06285 6.19706 6.32610 6.38195 6.58776 6.60015 6.62911 6.65051 6.85502 7.06073 7.58812 7.62669 7.90247 7.96315 7.98980 8.29740 8.58800 9.23456 9.84322 10.47418 11.41194 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.014620 B = 0.003479 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.741319 B = 8047.008228 C = 9260.213621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.458 5.458 3 C 0.173 3.827 4 N -0.496 5.496 5 C -0.029 4.029 6 C -0.016 4.016 7 C -0.029 4.029 8 C -0.127 4.127 9 C 0.525 3.475 10 O -0.530 6.530 11 N -0.607 5.607 12 C 0.103 3.897 13 C -0.122 4.122 14 C -0.112 4.112 15 H 0.088 0.912 16 C 0.144 3.856 17 N -0.603 5.603 18 C -0.234 4.234 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.915 5.915 22 Si 0.911 3.089 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.181 3.819 27 C 0.114 3.886 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.203 0.797 33 H 0.168 0.832 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.017 0.983 44 H 0.253 0.747 45 H 0.044 0.956 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.673 11.975 2.596 16.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.141 5.141 3 C -0.109 4.109 4 N -0.213 5.213 5 C -0.176 4.176 6 C -0.131 4.131 7 C -0.068 4.068 8 C -0.167 4.167 9 C 0.313 3.687 10 O -0.407 6.407 11 N -0.342 5.342 12 C -0.020 4.020 13 C -0.159 4.159 14 C -0.131 4.131 15 H 0.106 0.894 16 C 0.018 3.982 17 N -0.330 5.330 18 C -0.362 4.362 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.562 5.562 22 Si 0.741 3.259 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.056 3.944 27 C 0.011 3.989 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.219 0.781 33 H 0.185 0.815 34 H 0.113 0.887 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.034 0.966 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.869 12.300 1.791 16.511 hybrid contribution -1.799 -0.557 0.098 1.886 sum 9.070 11.743 1.889 14.958 Atomic orbital electron populations 1.22111 0.76421 1.04990 1.04012 1.45349 1.07731 1.06758 1.54220 1.24884 0.85714 0.93401 1.06882 1.70258 1.19436 1.12090 1.19563 1.22066 0.95758 0.91036 1.08790 1.21348 0.91238 0.89856 1.10670 1.19768 1.03567 0.87243 0.96215 1.21588 1.03321 0.93389 0.98403 1.20109 0.77895 0.88071 0.82649 1.90743 1.49446 1.69870 1.30606 1.48606 1.67009 1.12853 1.05718 1.22279 0.99003 0.97989 0.82768 1.22754 1.01570 0.94384 0.97234 1.22944 0.99322 0.96396 0.94475 0.89403 1.21070 0.88289 0.95432 0.93420 1.44141 1.03074 1.68179 1.17565 1.18963 0.81076 1.32767 1.03403 0.90457 1.24840 0.98119 1.00629 0.96675 1.70005 1.33569 1.44027 1.08549 0.86228 0.85039 0.77876 0.76754 1.21224 1.21634 1.21133 1.21243 0.84096 0.98435 0.90667 1.22831 0.99433 0.81133 0.95545 0.90225 0.90233 0.89387 0.89129 0.78078 0.81451 0.88663 0.90192 0.89531 0.88902 0.91282 0.91833 0.89610 0.90570 0.94375 0.96572 0.93703 0.93824 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 11.00 59.85 0.66 1.16 16 2 N -0.46 -4.71 3.15 -121.37 -0.38 -5.09 16 3 C 0.17 1.80 12.56 -90.37 -1.14 0.67 16 4 N -0.50 -6.50 11.25 -14.66 -0.16 -6.66 16 5 C -0.03 -0.35 11.79 -17.81 -0.21 -0.56 16 6 C -0.02 -0.19 6.21 -81.60 -0.51 -0.70 16 7 C -0.03 -0.35 4.84 -27.88 -0.13 -0.49 16 8 C -0.13 -1.56 4.69 -27.88 -0.13 -1.69 16 9 C 0.52 8.99 7.56 -10.99 -0.08 8.90 16 10 O -0.53 -11.34 16.07 5.56 0.09 -11.25 16 11 N -0.61 -10.18 2.83 -161.79 -0.46 -10.64 16 12 C 0.10 1.31 6.66 -2.55 -0.02 1.29 16 13 C -0.12 -1.69 6.32 -24.76 -0.16 -1.85 16 14 C -0.11 -1.80 3.97 -88.26 -0.35 -2.15 16 15 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 16 C 0.14 2.87 6.50 -3.69 -0.02 2.84 16 17 N -0.60 -15.26 3.37 -172.29 -0.58 -15.85 16 18 C -0.23 -6.49 10.25 -15.06 -0.15 -6.64 16 19 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 20 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 21 N -0.91 -27.40 10.23 55.49 0.57 -26.83 16 22 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.18 4.52 4.62 -3.61 -0.02 4.51 16 27 C 0.11 2.20 3.81 -65.87 -0.25 1.95 16 28 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.73 7.12 -51.93 -0.37 0.36 16 32 H 0.20 1.32 8.06 -52.48 -0.42 0.89 16 33 H 0.17 1.76 8.06 -52.49 -0.42 1.33 16 34 H 0.09 1.18 8.10 -51.93 -0.42 0.76 16 35 H 0.08 1.06 7.05 -51.93 -0.37 0.69 16 36 H 0.09 1.01 7.84 -51.93 -0.41 0.60 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.78 7.49 -51.93 -0.39 0.39 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 1.45 7.93 -51.93 -0.41 1.04 16 41 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.04 0.73 7.95 -51.93 -0.41 0.31 16 43 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.04 1.28 7.51 -51.93 -0.39 0.89 16 46 H 0.05 1.53 6.89 -51.93 -0.36 1.17 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -35.66 369.33 -10.29 -45.95 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.30 Total: 0.73 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -2.61 Total: 6.98 kcal Atomic # 7 Polarization: -64.05 SS G_CDS: -1.02 Total: -65.07 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.66 -10.29 -45.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076517536.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.642 kcal (2) G-P(sol) polarization free energy of solvation -35.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds