Wall clock time and date at job start Tue Mar 31 2020 05:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46504 * 120.00170 * 2 1 4 4 C 1.53002 * 109.46940 * 274.82891 * 3 2 1 5 5 H 1.09003 * 112.73291 * 316.52369 * 4 3 2 6 6 C 1.53494 * 113.47230 * 87.27224 * 4 3 2 7 7 C 1.53608 * 83.30738 * 140.83034 * 6 4 3 8 8 N 1.47067 * 113.46812 * 185.78597 * 4 3 2 9 9 C 1.36935 * 136.05755 * 38.12614 * 8 4 3 10 10 H 1.08005 * 119.99868 * 354.86161 * 9 8 4 11 11 C 1.38814 * 120.00335 * 174.86557 * 9 8 4 12 12 N 1.31623 * 119.99277 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00438 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47106 * 89.99679 * 13 11 9 15 15 H 1.48492 * 109.47196 * 209.99836 * 13 11 9 16 16 H 1.48505 * 109.47115 * 330.00116 * 13 11 9 17 17 C 1.34773 * 120.00007 * 179.97438 * 2 1 3 18 18 O 1.21286 * 119.99989 * 174.68464 * 17 2 1 19 19 C 1.50695 * 120.00018 * 354.69153 * 17 2 1 20 20 H 1.08998 * 109.46924 * 59.98567 * 19 17 2 21 21 C 1.53145 * 109.46249 * 179.91684 * 19 17 2 22 22 C 1.53401 * 109.24117 * 189.44297 * 21 19 17 23 23 C 1.51044 * 108.24541 * 311.25518 * 22 21 19 24 24 N 1.30089 * 127.39288 * 195.91364 * 23 22 21 25 25 C 1.34291 * 109.21477 * 179.97438 * 24 23 22 26 26 C 1.34854 * 108.07207 * 0.03737 * 25 24 23 27 27 N 1.35424 * 123.98110 * 15.91320 * 23 22 21 28 28 C 1.46469 * 124.82425 * 0.13737 * 27 23 22 29 29 H 1.08992 * 109.47171 * 270.00394 * 1 2 3 30 30 H 1.09007 * 109.46768 * 30.00480 * 1 2 3 31 31 H 1.08998 * 109.46781 * 150.00037 * 1 2 3 32 32 H 1.09007 * 109.47081 * 34.82274 * 3 2 1 33 33 H 1.08993 * 109.47142 * 154.82570 * 3 2 1 34 34 H 1.09004 * 114.20594 * 254.43837 * 6 4 3 35 35 H 1.08994 * 114.20590 * 27.25377 * 6 4 3 36 36 H 1.08999 * 113.50586 * 219.18440 * 7 6 4 37 37 H 1.08995 * 113.46739 * 88.76644 * 7 6 4 38 38 H 0.97003 * 119.99514 * 180.02562 * 12 11 9 39 39 H 1.09000 * 109.46831 * 69.53904 * 21 19 17 40 40 H 1.08998 * 109.55725 * 309.39780 * 21 19 17 41 41 H 1.09001 * 109.71760 * 191.55791 * 22 21 19 42 42 H 1.08998 * 109.71502 * 70.95776 * 22 21 19 43 43 H 1.08004 * 125.96433 * 180.02562 * 25 24 23 44 44 H 1.08001 * 126.66030 * 180.02562 * 26 25 24 45 45 H 1.09000 * 109.57979 * 136.89837 * 28 27 23 46 46 H 1.08995 * 109.58721 * 257.17198 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3474 1.7711 -1.4374 5 1 2.6239 0.9793 -2.1337 6 6 1.1605 2.6188 -1.9156 7 6 2.2599 3.4549 -2.5877 8 7 3.1875 2.9726 -1.5533 9 6 4.3306 3.4375 -0.9598 10 1 4.7755 2.8900 -0.1420 11 6 4.9176 4.6125 -1.4091 12 7 4.3749 5.2800 -2.4053 13 14 6.4765 5.2470 -0.5990 14 1 7.6608 4.6819 -1.2942 15 1 6.5117 6.7289 -0.6862 16 1 6.4963 4.8344 0.8274 17 6 2.1389 -1.1672 0.0005 18 8 3.3478 -1.1695 -0.0968 19 6 1.3902 -2.4694 0.1218 20 1 0.6942 -2.5673 -0.7113 21 6 2.3844 -3.6340 0.0944 22 6 1.6127 -4.9548 -0.0202 23 6 0.5111 -4.9501 1.0131 24 7 -0.1768 -5.9687 1.4391 25 6 -1.0617 -5.5509 2.3588 26 6 -0.9143 -4.2185 2.5062 27 7 0.0805 -3.8383 1.6554 28 6 0.6125 -2.4903 1.4423 29 1 -0.3633 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5140 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6486 2.0053 0.5869 33 1 3.1846 1.1184 0.4371 34 1 0.4980 2.1067 -2.6136 35 1 0.6305 3.1368 -1.1164 36 1 2.0787 4.5287 -2.5418 37 1 2.5130 3.1128 -3.5912 38 1 4.7853 6.1008 -2.7195 39 1 2.9703 -3.6332 1.0135 40 1 3.0497 -3.5256 -0.7622 41 1 2.2864 -5.7915 0.1644 42 1 1.1813 -5.0433 -1.0173 43 1 -1.7682 -6.1733 2.8880 44 1 -1.4750 -3.5773 3.1702 45 1 -0.2099 -1.7766 1.3933 46 1 1.2773 -2.2257 2.2645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085681521.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:19 Heat of formation + Delta-G solvation = 92.548317 kcal Electronic energy + Delta-G solvation = -27086.217831 eV Core-core repulsion = 23400.178147 eV Total energy + Delta-G solvation = -3686.039684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 318.180 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.59213 -40.26827 -38.20804 -36.37601 -35.50341 -33.47324 -32.22151 -30.73528 -28.91477 -28.23530 -27.94463 -26.65104 -24.81354 -23.53063 -23.28750 -21.86585 -21.59733 -19.66608 -19.26339 -18.98375 -17.41377 -17.33637 -16.72206 -16.11695 -15.89453 -15.53957 -14.84759 -14.74821 -14.45336 -14.27501 -14.16396 -14.04497 -13.67398 -13.58356 -13.20525 -12.90734 -12.79244 -12.51514 -12.21116 -11.96336 -11.86735 -11.52735 -11.52079 -11.29589 -11.18267 -10.96390 -10.78061 -10.47391 -10.19446 -9.93537 -9.89707 -9.84793 -9.78619 -9.48276 -8.81564 -8.57679 -8.44816 -6.89889 -5.78596 -3.10637 1.80595 2.31075 2.60876 2.91329 2.95488 3.39145 3.44486 3.45671 3.94506 4.12170 4.12937 4.21765 4.45362 4.61322 4.66558 4.78661 4.88912 4.94261 5.02514 5.12540 5.14713 5.21134 5.24028 5.40281 5.41758 5.43359 5.56596 5.60706 5.69192 5.73283 5.86389 5.89032 6.05654 6.09426 6.20850 6.34300 6.42444 6.53165 6.61202 6.78932 6.89330 7.20080 7.34730 7.37650 7.54360 7.88654 7.96649 8.11844 9.03118 9.69443 10.62561 11.39522 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.026047 B = 0.002744 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.715511 B =10203.423687 C =10615.074493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.608 5.608 3 C 0.114 3.886 4 C 0.134 3.866 5 H 0.043 0.957 6 C -0.170 4.170 7 C 0.158 3.842 8 N -0.600 5.600 9 C -0.217 4.217 10 H 0.081 0.919 11 C -0.007 4.007 12 N -0.920 5.920 13 Si 0.911 3.089 14 H -0.288 1.288 15 H -0.290 1.290 16 H -0.280 1.280 17 C 0.516 3.484 18 O -0.520 6.520 19 C -0.120 4.120 20 H 0.108 0.892 21 C -0.107 4.107 22 C -0.034 4.034 23 C 0.209 3.791 24 N -0.491 5.491 25 C -0.032 4.032 26 C -0.055 4.055 27 N -0.454 5.454 28 C 0.108 3.892 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.025 0.975 38 H 0.253 0.747 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.169 0.831 44 H 0.175 0.825 45 H 0.103 0.897 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.087 -16.522 7.139 22.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.341 5.341 3 C -0.009 4.009 4 C 0.025 3.975 5 H 0.060 0.940 6 C -0.208 4.208 7 C 0.032 3.968 8 N -0.326 5.326 9 C -0.344 4.344 10 H 0.099 0.901 11 C -0.204 4.204 12 N -0.567 5.567 13 Si 0.741 3.259 14 H -0.215 1.215 15 H -0.216 1.216 16 H -0.205 1.205 17 C 0.302 3.698 18 O -0.395 6.395 19 C -0.142 4.142 20 H 0.126 0.874 21 C -0.145 4.145 22 C -0.073 4.073 23 C -0.054 4.054 24 N -0.210 5.210 25 C -0.180 4.180 26 C -0.188 4.188 27 N -0.137 5.137 28 C -0.015 4.015 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.187 0.813 44 H 0.192 0.808 45 H 0.121 0.879 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.002 -16.895 6.886 22.403 hybrid contribution 0.551 1.303 0.640 1.553 sum -12.451 -15.592 7.526 21.326 Atomic orbital electron populations 1.21971 0.80091 1.03780 1.01368 1.47913 1.06749 1.06577 1.72902 1.21941 0.97364 0.82179 0.99376 1.22399 0.90439 0.91221 0.93413 0.93982 1.23793 0.96307 1.00047 1.00696 1.21948 0.85048 0.98617 0.91158 1.45702 1.27793 1.16236 1.42849 1.18925 0.99534 1.04701 1.11265 0.90137 1.24808 0.99101 0.98220 0.98243 1.69845 1.40676 1.17715 1.28475 0.86133 0.83138 0.77879 0.78726 1.21550 1.21648 1.20547 1.20098 0.87878 0.84545 0.77299 1.90776 1.13790 1.86663 1.48256 1.21634 0.99024 0.95176 0.98352 0.87380 1.21547 0.96909 0.90730 1.05334 1.20258 0.92664 0.99035 0.95361 1.23411 1.00572 0.81528 0.99872 1.70073 1.08581 1.28978 1.13350 1.22366 1.02020 0.92639 1.01006 1.22576 0.97123 0.97866 1.01228 1.45366 1.28292 1.08526 1.31555 1.22090 0.99446 0.81859 0.98090 0.92652 0.89856 0.91405 0.90357 0.89660 0.92778 0.90547 0.91551 0.95749 0.93661 0.90456 0.88549 0.88237 0.89038 0.81343 0.80814 0.87915 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.57 8.86 59.85 0.53 1.10 16 2 N -0.61 -7.63 2.87 -181.57 -0.52 -8.15 16 3 C 0.11 1.91 5.37 -4.04 -0.02 1.89 16 4 C 0.13 2.64 4.31 -72.40 -0.31 2.33 16 5 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 6 C -0.17 -2.97 7.14 -26.16 -0.19 -3.15 16 7 C 0.16 3.66 7.28 -8.45 -0.06 3.60 16 8 N -0.60 -15.17 3.65 -176.80 -0.64 -15.82 16 9 C -0.22 -6.07 10.55 -15.06 -0.16 -6.23 16 10 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 11 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 12 N -0.92 -27.40 11.64 55.49 0.65 -26.76 16 13 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 17 C 0.52 6.84 7.02 -10.99 -0.08 6.76 16 18 O -0.52 -9.34 15.39 5.55 0.09 -9.26 16 19 C -0.12 -1.11 1.73 -91.56 -0.16 -1.27 16 20 H 0.11 0.86 7.22 -51.93 -0.37 0.48 16 21 C -0.11 -1.01 4.68 -26.45 -0.12 -1.13 16 22 C -0.03 -0.30 6.33 -27.51 -0.17 -0.47 16 23 C 0.21 2.27 7.65 -155.24 -1.19 1.09 16 24 N -0.49 -6.15 11.24 -10.62 -0.12 -6.27 16 25 C -0.03 -0.33 11.87 -17.68 -0.21 -0.54 16 26 C -0.05 -0.48 11.64 -16.76 -0.20 -0.67 16 27 N -0.45 -4.28 3.13 -113.76 -0.36 -4.64 16 28 C 0.11 0.85 5.87 -3.92 -0.02 0.83 16 29 H 0.06 0.34 6.95 -51.93 -0.36 -0.02 16 30 H 0.08 0.69 7.17 -51.92 -0.37 0.32 16 31 H 0.07 0.43 6.24 -51.93 -0.32 0.10 16 32 H 0.08 1.23 7.83 -51.93 -0.41 0.82 16 33 H 0.09 1.69 7.36 -51.93 -0.38 1.31 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 1.25 7.93 -51.93 -0.41 0.84 16 36 H 0.07 1.69 7.36 -51.93 -0.38 1.30 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 40 H 0.10 0.97 7.80 -51.93 -0.40 0.56 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.17 1.28 8.06 -52.48 -0.42 0.86 16 44 H 0.17 0.95 8.06 -52.49 -0.42 0.52 16 45 H 0.10 0.61 5.14 -51.93 -0.27 0.35 16 46 H 0.09 0.75 8.12 -51.93 -0.42 0.33 16 LS Contribution 364.81 15.07 5.50 5.50 Total: -1.00 -35.42 364.81 -9.93 -45.35 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -7.04 Total: -1.10 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -2.46 Total: 3.84 kcal Atomic # 7 Polarization: -60.63 SS G_CDS: -1.00 Total: -61.63 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.42 -9.93 -45.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085681521.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.899 kcal (2) G-P(sol) polarization free energy of solvation -35.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds