Wall clock time and date at job start Tue Mar 31 2020 05:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34222 * 117.00074 * 2 1 4 4 O 1.20822 * 120.00187 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00048 * 179.97438 * 3 2 1 6 6 H 1.09004 * 110.53855 * 302.60786 * 5 3 2 7 7 C 1.54891 * 110.48877 * 65.22131 * 5 3 2 8 8 C 1.54888 * 102.75120 * 156.61975 * 7 5 3 9 9 C 1.54261 * 104.19672 * 322.06034 * 8 7 5 10 10 C 1.53876 * 106.59990 * 23.60631 * 9 8 7 11 11 H 1.08998 * 110.03319 * 240.71542 * 10 9 8 12 12 N 1.46504 * 110.03266 * 119.28382 * 10 9 8 13 13 S 1.65602 * 119.99635 * 96.45428 * 12 10 9 14 14 O 1.42099 * 104.27391 * 181.07130 * 13 12 10 15 15 O 1.42098 * 104.27804 * 308.92735 * 13 12 10 16 16 C 1.81398 * 104.44804 * 65.00461 * 13 12 10 17 17 C 1.53004 * 109.46821 * 179.97438 * 16 13 12 18 18 C 1.53006 * 109.46911 * 179.97438 * 17 16 13 19 19 C 1.50695 * 109.47128 * 180.02562 * 18 17 16 20 20 H 1.08006 * 120.00293 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00344 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99601 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00353 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46998 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47455 * 119.99640 * 23 21 19 26 26 H 1.48499 * 109.46995 * 239.99939 * 23 21 19 27 27 H 1.09001 * 109.47192 * 300.00304 * 1 2 3 28 28 H 1.09000 * 109.46545 * 60.00765 * 1 2 3 29 29 H 1.09000 * 109.47194 * 179.97438 * 1 2 3 30 30 H 1.09005 * 110.75269 * 38.30480 * 7 5 3 31 31 H 1.09004 * 110.91555 * 275.01294 * 7 5 3 32 32 H 1.09000 * 110.48622 * 203.37816 * 8 7 5 33 33 H 1.08999 * 110.48451 * 80.73628 * 8 7 5 34 34 H 1.08998 * 110.03492 * 264.32506 * 9 8 7 35 35 H 1.08994 * 110.03470 * 142.89082 * 9 8 7 36 36 H 0.96997 * 120.00327 * 276.46167 * 12 10 9 37 37 H 1.09001 * 109.46803 * 299.99520 * 16 13 12 38 38 H 1.08998 * 109.47673 * 59.99884 * 16 13 12 39 39 H 1.09001 * 109.47223 * 299.99487 * 17 16 13 40 40 H 1.09002 * 109.46898 * 60.00157 * 17 16 13 41 41 H 1.09001 * 109.46936 * 299.99880 * 18 17 16 42 42 H 1.08996 * 109.47035 * 59.99543 * 18 17 16 43 43 H 0.97004 * 119.99671 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9767 0.7457 0.8607 7 6 4.1401 0.6956 -1.3164 8 6 5.5247 1.3825 -1.4173 9 6 5.2751 2.8146 -0.9012 10 6 4.0299 2.7462 0.0004 11 1 3.2433 3.3854 -0.4003 12 7 4.3725 3.1645 1.3619 13 16 4.0971 4.7251 1.8426 14 8 4.5664 4.7669 3.1832 15 8 4.7030 5.5160 0.8293 16 6 2.2924 4.9017 1.7942 17 6 1.9070 6.3189 2.2235 18 6 0.3848 6.4681 2.1821 19 6 0.0052 7.8640 2.6043 20 1 0.7729 8.5740 2.8747 21 6 -1.3221 8.2349 2.6454 22 7 -2.2569 7.3705 2.3157 23 14 -1.7925 9.9655 3.1681 24 1 -0.5645 10.7379 3.4851 25 1 -2.5268 10.6337 2.0638 26 1 -2.6603 9.9004 4.3714 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.5112 0.9676 -2.1642 31 1 4.2497 -0.3869 -1.2503 32 1 5.8653 1.4040 -2.4525 33 1 6.2513 0.8708 -0.7862 34 1 5.0926 3.4871 -1.7393 35 1 6.1342 3.1591 -0.3256 36 1 4.7608 2.5275 1.9819 37 1 1.9366 4.7195 0.7802 38 1 1.8383 4.1806 2.4737 39 1 2.2628 6.5007 3.2376 40 1 2.3610 7.0404 1.5442 41 1 0.0294 6.2863 1.1678 42 1 -0.0696 5.7465 2.8610 43 1 -3.1907 7.6314 2.3450 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122159708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:01 Heat of formation + Delta-G solvation = -181.678483 kcal Electronic energy + Delta-G solvation = -25741.006031 eV Core-core repulsion = 21912.674425 eV Total energy + Delta-G solvation = -3828.331607 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.96187 -38.62492 -36.81297 -36.53552 -35.70346 -34.58478 -33.70788 -32.12433 -30.29425 -27.73865 -27.64196 -27.41120 -23.66580 -22.83961 -21.16259 -20.62026 -20.27584 -19.23802 -18.08556 -17.51377 -16.86373 -16.73914 -16.48600 -16.33888 -15.61892 -15.38021 -14.79927 -14.44193 -14.39042 -13.96073 -13.92783 -13.33673 -13.03029 -12.75891 -12.52281 -12.46582 -12.21959 -12.00448 -11.88318 -11.78764 -11.68998 -11.52776 -11.44626 -11.24082 -11.15667 -10.99874 -10.94912 -10.88705 -10.76194 -10.52659 -10.37681 -9.87953 -9.75286 -9.26192 -9.01259 -8.36187 -6.00689 -4.03522 0.52395 1.97675 2.41805 2.85949 3.32155 3.39350 3.44620 3.86473 4.00431 4.16967 4.35293 4.46411 4.51336 4.75324 4.88743 4.94232 4.95720 5.01848 5.04268 5.08291 5.13450 5.24233 5.33172 5.35697 5.38546 5.40174 5.53817 5.66914 5.77616 5.97007 6.00315 6.10263 6.18063 6.34882 6.56139 6.87655 6.95624 7.51503 7.65127 7.75409 7.98218 8.38634 9.03176 9.60712 11.10537 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.003710 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.137984 B = 7545.554871 C = 9015.440217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.359 6.359 3 C 0.461 3.539 4 O -0.491 6.491 5 C -0.094 4.094 6 H 0.122 0.878 7 C -0.110 4.110 8 C -0.123 4.123 9 C -0.138 4.138 10 C 0.158 3.842 11 H 0.108 0.892 12 N -1.119 6.119 13 S 2.596 3.404 14 O -0.965 6.965 15 O -0.959 6.959 16 C -0.603 4.603 17 C -0.104 4.104 18 C 0.031 3.969 19 C -0.524 4.524 20 H 0.058 0.942 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.894 3.106 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.414 0.586 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.021 0.979 42 H 0.020 0.980 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.898 -19.922 -8.005 25.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.275 6.275 3 C 0.303 3.697 4 O -0.377 6.377 5 C -0.115 4.115 6 H 0.139 0.861 7 C -0.149 4.149 8 C -0.160 4.160 9 C -0.177 4.177 10 C 0.050 3.950 11 H 0.126 0.874 12 N -0.875 5.875 13 S 2.693 3.307 14 O -0.956 6.956 15 O -0.949 6.949 16 C -0.735 4.735 17 C -0.144 4.144 18 C -0.007 4.007 19 C -0.562 4.562 20 H 0.077 0.923 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.721 3.279 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.119 0.881 30 H 0.095 0.905 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.247 0.753 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.040 0.960 42 H 0.038 0.962 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.101 -18.880 -7.910 24.304 hybrid contribution -1.245 0.280 0.497 1.370 sum 11.856 -18.600 -7.413 23.270 Atomic orbital electron populations 1.23330 0.75849 1.03687 1.03188 1.86468 1.23758 1.33197 1.84118 1.23532 0.91703 0.81705 0.72745 1.90762 1.66779 1.36041 1.44075 1.22248 0.87783 0.98721 1.02715 0.86062 1.22475 0.96847 1.00832 0.94698 1.22378 0.96327 0.95395 1.01941 1.22672 0.97924 0.97368 0.99780 1.21383 0.97634 0.93813 0.82127 0.87440 1.55921 1.79228 1.32208 1.20117 1.05449 0.78698 0.72692 0.73875 1.93572 1.79942 1.85169 1.36891 1.93571 1.74245 1.67642 1.59479 1.30497 1.22888 1.08566 1.11596 1.21489 1.03467 0.88871 1.00547 1.19051 0.86764 0.97095 0.97795 1.21310 0.92155 0.97546 1.45235 0.92345 1.25025 0.96614 0.97436 0.95354 1.69985 1.00218 1.34554 1.48648 0.86508 0.78562 0.84583 0.78212 1.19603 1.20969 1.20994 0.91424 0.91632 0.88113 0.90456 0.89715 0.90683 0.90943 0.90066 0.89864 0.75254 0.84962 0.85539 0.91754 0.91651 0.96029 0.96197 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.54 10.56 -39.24 -0.41 -3.96 16 3 C 0.46 5.08 7.25 36.01 0.26 5.34 16 4 O -0.49 -7.12 15.01 -18.75 -0.28 -7.40 16 5 C -0.09 -0.77 3.07 -90.11 -0.28 -1.05 16 6 H 0.12 0.75 7.81 -51.93 -0.41 0.34 16 7 C -0.11 -0.68 6.32 -24.74 -0.16 -0.84 16 8 C -0.12 -0.73 6.83 -25.08 -0.17 -0.90 16 9 C -0.14 -1.21 6.60 -25.61 -0.17 -1.38 16 10 C 0.16 1.62 2.72 -66.81 -0.18 1.44 16 11 H 0.11 1.27 5.92 -51.93 -0.31 0.96 16 12 N -1.12 -12.29 5.29 -3.94 -0.02 -12.31 16 13 S 2.60 40.17 5.39 -107.50 -0.58 39.59 16 14 O -0.97 -17.47 18.08 -57.54 -1.04 -18.52 16 15 O -0.96 -17.15 17.82 -57.54 -1.03 -18.18 16 16 C -0.60 -10.40 5.97 37.16 0.22 -10.18 16 17 C -0.10 -2.24 5.16 -26.73 -0.14 -2.38 16 18 C 0.03 0.83 4.97 -27.88 -0.14 0.69 16 19 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 20 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 22 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 23 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 28 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.50 8.05 -51.93 -0.42 0.08 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.77 7.92 -51.93 -0.41 0.36 16 36 H 0.41 3.46 8.58 -34.47 -0.30 3.17 16 37 H 0.13 2.22 7.31 -51.92 -0.38 1.84 16 38 H 0.13 2.04 8.14 -51.93 -0.42 1.62 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 41 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -37.16 369.61 -9.00 -46.16 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -6.83 Total: 0.40 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: -0.09 Total: -21.86 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.72 Total: -38.82 kcal Atomic # 8 Polarization: -45.29 SS G_CDS: -2.76 Total: -48.06 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 16 Polarization: 40.17 SS G_CDS: -0.58 Total: 39.59 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -37.16 -9.00 -46.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122159708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.514 kcal (2) G-P(sol) polarization free energy of solvation -37.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds