Wall clock time and date at job start Tue Mar 31 2020 05:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31401 * 1 3 3 Si 1.86799 * 120.00091 * 2 1 4 4 H 1.48501 * 109.47274 * 240.00134 * 3 2 1 5 5 H 1.48497 * 109.47134 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47141 * 120.00245 * 3 2 1 7 7 C 1.38950 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00261 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00006 * 359.97438 * 7 2 1 10 10 C 1.34785 * 120.00247 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99692 * 0.02562 * 10 9 7 12 12 C 1.50698 * 120.00128 * 179.97438 * 10 9 7 13 13 N 1.46496 * 109.47016 * 179.97438 * 12 10 9 14 14 C 1.34780 * 119.99811 * 180.02562 * 13 12 10 15 15 O 1.21276 * 120.00277 * 359.97438 * 14 13 12 16 16 C 1.50697 * 120.00048 * 180.02562 * 14 13 12 17 17 N 1.46500 * 109.47381 * 179.97438 * 16 14 13 18 18 C 1.34773 * 119.99913 * 179.97438 * 17 16 14 19 19 O 1.21288 * 120.00333 * 359.97438 * 18 17 16 20 20 C 1.50698 * 119.99781 * 180.02562 * 18 17 16 21 21 C 1.50707 * 109.47247 * 180.02562 * 20 18 17 22 22 C 1.38238 * 119.99792 * 89.99994 * 21 20 18 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97930 * 21 20 18 27 27 H 0.97006 * 120.00127 * 359.97438 * 1 2 3 28 28 H 0.96999 * 120.00507 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.46641 * 60.00319 * 12 10 9 30 30 H 1.08996 * 109.47484 * 300.00660 * 12 10 9 31 31 H 0.97003 * 120.00401 * 0.02562 * 13 12 10 32 32 H 1.09000 * 109.47516 * 59.99093 * 16 14 13 33 33 H 1.09004 * 109.46835 * 299.99723 * 16 14 13 34 34 H 0.96998 * 119.99656 * 0.02562 * 17 16 14 35 35 H 1.09005 * 109.47656 * 60.00320 * 20 18 17 36 36 H 1.09000 * 109.47265 * 299.99628 * 20 18 17 37 37 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 38 38 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 39 39 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 40 40 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 41 41 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8630 0.0000 13 7 2.1956 -5.9764 -0.0007 14 6 1.7463 -7.2472 -0.0009 15 8 0.5540 -7.4688 0.0001 16 6 2.7255 -8.3926 -0.0010 17 7 1.9930 -9.6613 -0.0006 18 6 2.6669 -10.8285 -0.0012 19 8 3.8798 -10.8285 -0.0025 20 6 1.9134 -12.1336 -0.0013 21 6 2.8927 -13.2791 -0.0014 22 6 3.3418 -13.8045 1.1958 23 6 4.2396 -14.8556 1.1958 24 6 4.6879 -15.3816 -0.0014 25 6 4.2430 -14.8527 -1.1985 26 6 3.3416 -13.8047 -1.1985 27 1 -0.4850 0.8401 0.0004 28 1 0.3533 -2.3907 -0.0005 29 1 0.6167 -4.9208 -0.8898 30 1 0.6173 -4.9205 0.8902 31 1 3.1493 -5.7993 -0.0011 32 1 3.3524 -8.3350 0.8888 33 1 3.3522 -8.3348 -0.8911 34 1 1.0231 -9.6613 -0.0006 35 1 1.2864 -12.1911 -0.8911 36 1 1.2871 -12.1916 0.8889 37 1 2.9911 -13.3938 2.1312 38 1 4.5908 -15.2658 2.1311 39 1 5.3891 -16.2031 -0.0014 40 1 4.5966 -15.2608 -2.1338 41 1 2.9901 -13.3947 -2.1338 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343556956.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:37 Heat of formation + Delta-G solvation = -114.529322 kcal Electronic energy + Delta-G solvation = -24446.473856 eV Core-core repulsion = 20517.902856 eV Total energy + Delta-G solvation = -3928.571001 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.43076 -40.76161 -39.97768 -39.43256 -36.30677 -35.60551 -35.29560 -33.82833 -33.38372 -31.73269 -30.65565 -29.00920 -27.43984 -26.07172 -23.44392 -22.76844 -21.67624 -21.40159 -21.34199 -20.09909 -19.06735 -17.86525 -17.75240 -17.44567 -17.22542 -16.95774 -16.56587 -16.51230 -16.19643 -15.93016 -15.82078 -15.52549 -15.31355 -14.92127 -14.30737 -14.25495 -14.05055 -13.91471 -13.88548 -13.54209 -13.40045 -13.33936 -12.90680 -12.84925 -12.47304 -12.14023 -11.98370 -11.83532 -11.56675 -11.23023 -11.09274 -10.57110 -10.34707 -10.18444 -10.08866 -9.76573 -9.60841 -8.51437 -6.01566 0.44025 0.55605 1.37322 1.41074 1.43040 1.53140 1.60922 1.69015 1.90877 2.26274 2.41527 2.96627 3.10739 3.15928 3.54796 3.70608 3.98066 4.03854 4.19443 4.21207 4.26243 4.31329 4.38557 4.41892 4.42896 4.44626 4.62219 4.68516 4.81303 5.14472 5.16516 5.19740 5.23849 5.37952 5.59523 5.66185 5.69644 5.91026 6.16002 6.35568 6.47347 6.48965 6.98359 7.03587 7.18198 7.43800 7.94374 8.64943 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.046660 B = 0.001647 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.947454 B =16995.010856 C =17279.866263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.008 4.008 3 Si 0.996 3.004 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.340 4.340 8 H 0.086 0.914 9 N -0.558 5.558 10 C 0.430 3.570 11 O -0.625 6.625 12 C 0.122 3.878 13 N -0.702 5.702 14 C 0.516 3.484 15 O -0.568 6.568 16 C 0.107 3.893 17 N -0.713 5.713 18 C 0.517 3.483 19 O -0.574 6.574 20 C -0.096 4.096 21 C -0.082 4.082 22 C -0.122 4.122 23 C -0.132 4.132 24 C -0.131 4.131 25 C -0.132 4.132 26 C -0.122 4.122 27 H 0.280 0.720 28 H 0.399 0.601 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.416 0.584 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.419 0.581 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.269 -27.328 -0.003 27.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.209 4.209 3 Si 0.819 3.181 4 H -0.196 1.196 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.469 4.469 8 H 0.104 0.896 9 N -0.194 5.194 10 C 0.217 3.783 11 O -0.513 6.513 12 C -0.005 4.005 13 N -0.356 5.356 14 C 0.303 3.697 15 O -0.448 6.448 16 C -0.021 4.021 17 N -0.369 5.369 18 C 0.305 3.695 19 O -0.453 6.453 20 C -0.135 4.135 21 C -0.082 4.082 22 C -0.140 4.140 23 C -0.150 4.150 24 C -0.149 4.149 25 C -0.150 4.150 26 C -0.140 4.140 27 H 0.089 0.911 28 H 0.234 0.766 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.255 0.745 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.258 0.742 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.155 0.845 41 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.915 -27.267 -0.003 27.334 hybrid contribution -0.116 1.288 0.000 1.293 sum 1.798 -25.979 -0.003 26.041 Atomic orbital electron populations 1.69661 1.06938 1.29697 1.49120 1.26090 0.96519 1.02592 0.95738 0.84946 0.77737 0.76376 0.79044 1.19577 1.19626 1.19586 1.19700 0.92985 0.83629 1.50586 0.89618 1.41830 1.09604 1.04589 1.63357 1.20481 0.88151 0.86024 0.83626 1.90489 1.15249 1.87544 1.58054 1.20809 0.91523 0.83534 1.04655 1.45613 1.11757 1.04461 1.73798 1.20701 0.89517 0.84037 0.75491 1.90674 1.17558 1.84815 1.51706 1.20980 0.93415 0.81726 1.05933 1.45721 1.11735 1.03978 1.75443 1.21066 0.87833 0.85725 0.74848 1.90737 1.15698 1.88099 1.50737 1.20719 0.97337 0.87492 1.07930 1.19521 0.98518 0.96317 0.93846 1.21270 0.97950 0.96909 0.97893 1.21420 0.97565 0.96869 0.99101 1.21470 1.00238 1.00654 0.92567 1.21421 0.97545 0.96887 0.99102 1.21268 0.97916 0.96940 0.97894 0.91056 0.76636 0.88323 0.88311 0.74526 0.87397 0.87395 0.74247 0.85327 0.85338 0.85274 0.84468 0.84313 0.84470 0.85276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.55 13.05 21.66 0.28 -47.27 16 2 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 3 Si 1.00 41.10 29.55 68.60 2.03 43.13 16 4 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 6 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 7 C -0.34 -18.34 9.68 84.04 0.81 -17.53 16 8 H 0.09 4.88 7.16 -2.91 -0.02 4.85 16 9 N -0.56 -27.11 5.29 -306.97 -1.62 -28.73 16 10 C 0.43 18.94 7.85 87.66 0.69 19.63 16 11 O -0.63 -31.26 15.24 -3.08 -0.05 -31.31 16 12 C 0.12 4.06 6.15 85.63 0.53 4.58 16 13 N -0.70 -20.33 5.53 -466.80 -2.58 -22.91 16 14 C 0.52 13.32 7.90 87.66 0.69 14.02 16 15 O -0.57 -17.04 15.67 -3.02 -0.05 -17.09 16 16 C 0.11 2.22 6.15 85.63 0.53 2.74 16 17 N -0.71 -13.32 5.53 -466.79 -2.58 -15.90 16 18 C 0.52 10.36 7.82 87.66 0.69 11.05 16 19 O -0.57 -16.34 16.03 -3.06 -0.05 -16.39 16 20 C -0.10 -1.24 5.83 29.10 0.17 -1.07 16 21 C -0.08 -1.40 4.37 -19.86 -0.09 -1.49 16 22 C -0.12 -2.08 9.70 22.27 0.22 -1.86 16 23 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 24 C -0.13 -1.98 10.05 22.27 0.22 -1.75 16 25 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 26 C -0.12 -2.08 9.70 22.27 0.22 -1.86 16 27 H 0.28 13.68 8.31 -92.70 -0.77 12.90 16 28 H 0.40 18.52 7.90 -92.71 -0.73 17.79 16 29 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 30 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 31 H 0.42 12.09 7.44 -92.71 -0.69 11.40 16 32 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.42 6.93 7.44 -92.71 -0.69 6.24 16 35 H 0.13 1.06 8.09 -2.38 -0.02 1.04 16 36 H 0.13 1.06 8.08 -2.39 -0.02 1.04 16 37 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16 38 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 39 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 40 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 41 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -70.57 365.29 -0.04 -70.61 By element: Atomic # 1 Polarization: 44.07 SS G_CDS: -1.02 Total: 43.05 kcal Atomic # 6 Polarization: 17.21 SS G_CDS: 5.59 Total: 22.80 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -6.50 Total: -114.81 kcal Atomic # 8 Polarization: -64.64 SS G_CDS: -0.14 Total: -64.78 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -70.57 -0.04 -70.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343556956.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.917 kcal (2) G-P(sol) polarization free energy of solvation -70.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds