Wall clock time and date at job start Tue Mar 31 2020 05:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00045 * 2 1 4 4 H 1.48508 * 109.46826 * 239.99627 * 3 2 1 5 5 H 1.48493 * 109.47570 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47228 * 120.00189 * 3 2 1 7 7 C 1.38814 * 119.99445 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99680 * 191.90542 * 7 2 1 9 9 N 1.36933 * 120.00228 * 11.63969 * 7 2 1 10 10 C 1.46969 * 120.59506 * 33.80207 * 9 7 2 11 11 C 1.53809 * 108.39987 * 124.76049 * 10 9 7 12 12 N 1.46968 * 108.57893 * 49.63383 * 11 10 9 13 13 C 1.34772 * 120.59203 * 124.66902 * 12 11 10 14 14 O 1.21554 * 120.00424 * 190.97682 * 13 12 11 15 15 C 1.47888 * 120.00382 * 10.98027 * 13 12 11 16 16 C 1.39282 * 119.61290 * 187.17621 * 15 13 12 17 17 C 1.38535 * 119.12382 * 180.02562 * 16 15 13 18 18 C 1.38911 * 118.53591 * 0.02562 * 17 16 15 19 19 C 1.39722 * 119.43023 * 359.87194 * 18 17 16 20 20 N 1.31994 * 120.36860 * 359.92171 * 19 18 17 21 21 O 1.35989 * 120.45162 * 180.25056 * 19 18 17 22 22 C 1.43150 * 116.69028 * 342.38828 * 21 19 18 23 23 C 1.53454 * 108.31939 * 46.60951 * 22 21 19 24 24 O 1.35784 * 119.58186 * 179.64087 * 18 17 16 25 25 C 1.46962 * 118.81442 * 304.64995 * 12 11 10 26 26 C 1.46965 * 120.59440 * 214.08090 * 9 7 2 27 27 H 0.97006 * 119.99903 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.60803 * 244.54435 * 10 9 7 29 29 H 1.08995 * 109.61189 * 5.04851 * 10 9 7 30 30 H 1.08996 * 109.74026 * 289.84750 * 11 10 9 31 31 H 1.08999 * 109.53651 * 169.30157 * 11 10 9 32 32 H 1.07995 * 120.43323 * 0.06658 * 16 15 13 33 33 H 1.08003 * 120.72566 * 180.02562 * 17 16 15 34 34 H 1.08996 * 109.69436 * 166.32166 * 22 21 19 35 35 H 1.09001 * 109.69272 * 286.90434 * 22 21 19 36 36 H 1.09006 * 109.70953 * 59.81309 * 23 22 21 37 37 H 1.08998 * 109.71056 * 180.39599 * 23 22 21 38 38 H 1.09001 * 109.61019 * 295.48366 * 25 12 11 39 39 H 1.09001 * 109.61035 * 174.97272 * 25 12 11 40 40 H 1.08999 * 109.60642 * 354.94920 * 26 9 7 41 41 H 1.09003 * 109.60676 * 115.45543 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0728 -1.2122 0.1935 9 7 1.3465 -2.3760 -0.2382 10 6 0.2060 -2.4155 -1.1642 11 6 0.4884 -3.4808 -2.2371 12 7 0.9001 -4.7224 -1.5672 13 6 0.2470 -5.8776 -1.8020 14 8 0.4595 -6.8491 -1.1030 15 6 -0.7284 -5.9635 -2.9103 16 6 -1.5076 -7.1090 -3.0542 17 6 -2.4177 -7.1789 -4.0963 18 6 -2.5184 -6.0981 -4.9630 19 6 -1.7081 -4.9779 -4.7606 20 7 -0.8548 -4.9447 -3.7541 21 8 -1.7932 -3.9062 -5.5933 22 6 -2.4267 -4.1237 -6.8585 23 6 -3.7283 -4.9005 -6.6189 24 8 -3.3983 -6.1469 -5.9960 25 6 2.0371 -4.6818 -0.6369 26 6 1.7582 -3.6176 0.4317 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7005 -2.6746 -0.6172 29 1 0.0848 -1.4409 -1.6371 30 1 1.2869 -3.1380 -2.8951 31 1 -0.4158 -3.6613 -2.8184 32 1 -1.4040 -7.9315 -2.3620 33 1 -3.0353 -8.0546 -4.2318 34 1 -2.6517 -3.1652 -7.3262 35 1 -1.7671 -4.7026 -7.5049 36 1 -4.3846 -4.3255 -5.9655 37 1 -4.2268 -5.0849 -7.5705 38 1 2.9459 -4.4245 -1.1809 39 1 2.1557 -5.6554 -0.1614 40 1 2.6624 -3.4371 1.0130 41 1 0.9597 -3.9603 1.0897 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594294642.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:30 Heat of formation + Delta-G solvation = -5.640891 kcal Electronic energy + Delta-G solvation = -27356.243218 eV Core-core repulsion = 23432.393974 eV Total energy + Delta-G solvation = -3923.849244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.78847 -39.96935 -38.23292 -37.67066 -36.66033 -33.87954 -32.56246 -31.73393 -31.07615 -30.01844 -29.06775 -26.93529 -25.49848 -24.51845 -23.37648 -22.83209 -21.90111 -20.67771 -19.45695 -18.56524 -18.11720 -17.87730 -16.97349 -16.06620 -15.92789 -15.55020 -15.33458 -15.00424 -14.80377 -14.65713 -14.57625 -14.09345 -13.84045 -13.60678 -13.43197 -13.23973 -12.99926 -12.85299 -12.33235 -11.99000 -11.80550 -11.47082 -11.38376 -11.07533 -10.77109 -10.61396 -10.43354 -10.18379 -10.11438 -9.95194 -9.75913 -9.71392 -8.69294 -8.52055 -8.44747 -8.09326 -6.52387 -5.76379 -3.27479 0.52668 0.96431 2.37259 2.64028 2.87793 3.39492 3.42105 3.44561 3.46717 3.69703 3.80104 4.11828 4.36353 4.45725 4.51584 4.53598 4.73591 4.84090 5.01969 5.10526 5.11531 5.42080 5.45750 5.54551 5.72787 5.98050 6.00934 6.07931 6.19791 6.26326 6.31523 6.51001 6.62349 6.71450 6.88767 6.92478 7.18461 7.37717 7.60389 7.61422 7.79952 8.00381 8.49155 8.51966 9.22649 9.83114 10.44128 11.30646 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.015135 B = 0.003994 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.598312 B = 7009.081952 C = 8517.390764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.008 3.992 3 Si 0.905 3.095 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.258 4.258 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.161 3.839 11 C 0.052 3.948 12 N -0.570 5.570 13 C 0.564 3.436 14 O -0.551 6.551 15 C 0.098 3.902 16 C -0.108 4.108 17 C -0.080 4.080 18 C 0.025 3.975 19 C 0.257 3.743 20 N -0.424 5.424 21 O -0.288 6.288 22 C 0.025 3.975 23 C 0.017 3.983 24 O -0.301 6.301 25 C 0.093 3.907 26 C 0.133 3.867 27 H 0.255 0.745 28 H 0.019 0.981 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.133 0.867 32 H 0.159 0.841 33 H 0.153 0.847 34 H 0.131 0.869 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.127 0.873 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.928 -12.027 -15.116 20.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.191 4.191 3 Si 0.735 3.265 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.387 4.387 8 H 0.081 0.919 9 N -0.315 5.315 10 C 0.035 3.965 11 C -0.072 4.072 12 N -0.300 5.300 13 C 0.350 3.650 14 O -0.431 6.431 15 C -0.040 4.040 16 C -0.129 4.129 17 C -0.106 4.106 18 C -0.023 4.023 19 C 0.075 3.925 20 N -0.147 5.147 21 O -0.197 6.197 22 C -0.051 4.051 23 C -0.058 4.058 24 O -0.214 6.214 25 C -0.031 4.031 26 C 0.005 3.995 27 H 0.065 0.935 28 H 0.037 0.963 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.149 0.851 32 H 0.177 0.823 33 H 0.171 0.829 34 H 0.149 0.851 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.145 0.855 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -7.450 -11.563 -14.698 20.131 hybrid contribution -0.214 0.537 -0.349 0.675 sum -7.663 -11.025 -15.048 20.167 Atomic orbital electron populations 1.69979 1.05349 1.25685 1.53613 1.25228 0.95351 0.98502 1.00064 0.86340 0.78860 0.83164 0.78165 1.20898 1.21622 1.20822 1.19129 0.91000 0.83940 1.44662 0.91866 1.43996 1.35929 1.04075 1.47518 1.21278 0.88953 0.97055 0.89235 1.23860 1.02932 0.83580 0.96788 1.47959 1.30861 1.08460 1.42695 1.17679 0.80827 0.83557 0.82914 1.90736 1.66349 1.37371 1.48623 1.21061 0.97845 0.89767 0.95291 1.21892 0.94263 0.98944 0.97797 1.20874 0.99471 0.98067 0.92179 1.19939 0.93356 0.96745 0.92283 1.19655 0.93463 0.87147 0.92229 1.67196 1.17634 1.26988 1.02909 1.86303 1.76014 1.30538 1.26874 1.23767 0.93783 1.03972 0.83558 1.23757 0.97056 0.84743 1.00285 1.86242 1.58954 1.31917 1.44326 1.22312 0.87451 1.00985 0.92385 1.21286 0.98538 0.87206 0.92421 0.93507 0.96283 0.88828 0.92355 0.85102 0.82309 0.82907 0.85095 0.90013 0.89808 0.85507 0.91697 0.90010 0.91568 0.95873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 11.26 55.49 0.63 -25.79 16 2 C 0.01 0.22 5.01 -17.43 -0.09 0.13 16 3 Si 0.91 21.73 29.57 -169.99 -5.03 16.71 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 7 C -0.26 -7.14 9.54 -15.06 -0.14 -7.29 16 8 H 0.06 1.71 7.86 -52.48 -0.41 1.30 16 9 N -0.59 -15.33 2.94 -171.77 -0.50 -15.83 16 10 C 0.16 4.00 5.48 -3.37 -0.02 3.99 16 11 C 0.05 1.08 6.03 -3.37 -0.02 1.06 16 12 N -0.57 -11.52 2.95 -173.32 -0.51 -12.04 16 13 C 0.56 10.80 7.62 -12.31 -0.09 10.71 16 14 O -0.55 -11.23 15.78 5.32 0.08 -11.15 16 15 C 0.10 1.60 6.59 -83.07 -0.55 1.06 16 16 C -0.11 -1.40 9.62 -39.08 -0.38 -1.78 16 17 C -0.08 -0.88 10.08 -39.22 -0.40 -1.27 16 18 C 0.03 0.30 6.51 -38.78 -0.25 0.05 16 19 C 0.26 3.66 7.55 -16.93 -0.13 3.53 16 20 N -0.42 -7.05 6.14 -9.70 -0.06 -7.11 16 21 O -0.29 -3.74 10.51 -32.32 -0.34 -4.08 16 22 C 0.03 0.19 7.24 37.39 0.27 0.46 16 23 C 0.02 0.11 7.26 37.39 0.27 0.38 16 24 O -0.30 -2.98 10.42 -31.67 -0.33 -3.31 16 25 C 0.09 1.82 6.60 -3.60 -0.02 1.79 16 26 C 0.13 2.95 6.67 -3.60 -0.02 2.92 16 27 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.09 2.54 6.25 -51.93 -0.32 2.22 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.13 2.64 4.07 -82.96 -0.34 2.30 16 32 H 0.16 1.85 7.64 -52.49 -0.40 1.45 16 33 H 0.15 1.19 8.06 -52.48 -0.42 0.77 16 34 H 0.13 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.08 1.52 7.01 -51.93 -0.36 1.15 16 40 H 0.07 1.39 7.93 -51.93 -0.41 0.97 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 334.95 15.07 5.05 5.05 Total: -1.00 -34.04 334.95 -7.77 -41.81 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.19 Total: -0.01 kcal Atomic # 6 Polarization: 17.31 SS G_CDS: -1.57 Total: 15.74 kcal Atomic # 7 Polarization: -60.32 SS G_CDS: -0.45 Total: -60.77 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.59 Total: -18.53 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.04 -7.77 -41.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594294642.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.172 kcal (2) G-P(sol) polarization free energy of solvation -34.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds