Wall clock time and date at job start Tue Mar 31 2020 05:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00045 * 2 1 4 4 H 1.48508 * 109.46826 * 239.99627 * 3 2 1 5 5 H 1.48493 * 109.47570 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47228 * 120.00189 * 3 2 1 7 7 C 1.38814 * 119.99445 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99680 * 191.90542 * 7 2 1 9 9 N 1.36933 * 120.00228 * 11.63969 * 7 2 1 10 10 C 1.46969 * 120.59506 * 33.80207 * 9 7 2 11 11 C 1.53809 * 108.39987 * 124.76049 * 10 9 7 12 12 N 1.46968 * 108.57893 * 49.63383 * 11 10 9 13 13 C 1.34772 * 120.59203 * 124.66902 * 12 11 10 14 14 O 1.21554 * 120.00424 * 190.97682 * 13 12 11 15 15 C 1.47888 * 120.00382 * 10.98027 * 13 12 11 16 16 C 1.39282 * 119.61290 * 187.17621 * 15 13 12 17 17 C 1.38535 * 119.12382 * 180.02562 * 16 15 13 18 18 C 1.38911 * 118.53591 * 0.02562 * 17 16 15 19 19 C 1.39722 * 119.43023 * 359.87194 * 18 17 16 20 20 N 1.31994 * 120.36860 * 359.92171 * 19 18 17 21 21 O 1.35989 * 120.45162 * 180.25056 * 19 18 17 22 22 C 1.43150 * 116.69028 * 342.38828 * 21 19 18 23 23 C 1.53454 * 108.31939 * 46.60951 * 22 21 19 24 24 O 1.35784 * 119.58186 * 179.64087 * 18 17 16 25 25 C 1.46962 * 118.81442 * 304.64995 * 12 11 10 26 26 C 1.46965 * 120.59440 * 214.08090 * 9 7 2 27 27 H 0.97006 * 119.99903 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.60803 * 244.54435 * 10 9 7 29 29 H 1.08995 * 109.61189 * 5.04851 * 10 9 7 30 30 H 1.08996 * 109.74026 * 289.84750 * 11 10 9 31 31 H 1.08999 * 109.53651 * 169.30157 * 11 10 9 32 32 H 1.07995 * 120.43323 * 0.06658 * 16 15 13 33 33 H 1.08003 * 120.72566 * 180.02562 * 17 16 15 34 34 H 1.08996 * 109.69436 * 166.32166 * 22 21 19 35 35 H 1.09001 * 109.69272 * 286.90434 * 22 21 19 36 36 H 1.09006 * 109.70953 * 59.81309 * 23 22 21 37 37 H 1.08998 * 109.71056 * 180.39599 * 23 22 21 38 38 H 1.09001 * 109.61019 * 295.48366 * 25 12 11 39 39 H 1.09001 * 109.61035 * 174.97272 * 25 12 11 40 40 H 1.08999 * 109.60642 * 354.94920 * 26 9 7 41 41 H 1.09003 * 109.60676 * 115.45543 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0728 -1.2122 0.1935 9 7 1.3465 -2.3760 -0.2382 10 6 0.2060 -2.4155 -1.1642 11 6 0.4884 -3.4808 -2.2371 12 7 0.9001 -4.7224 -1.5672 13 6 0.2470 -5.8776 -1.8020 14 8 0.4595 -6.8491 -1.1030 15 6 -0.7284 -5.9635 -2.9103 16 6 -1.5076 -7.1090 -3.0542 17 6 -2.4177 -7.1789 -4.0963 18 6 -2.5184 -6.0981 -4.9630 19 6 -1.7081 -4.9779 -4.7606 20 7 -0.8548 -4.9447 -3.7541 21 8 -1.7932 -3.9062 -5.5933 22 6 -2.4267 -4.1237 -6.8585 23 6 -3.7283 -4.9005 -6.6189 24 8 -3.3983 -6.1469 -5.9960 25 6 2.0371 -4.6818 -0.6369 26 6 1.7582 -3.6176 0.4317 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7005 -2.6746 -0.6172 29 1 0.0848 -1.4409 -1.6371 30 1 1.2869 -3.1380 -2.8951 31 1 -0.4158 -3.6613 -2.8184 32 1 -1.4040 -7.9315 -2.3620 33 1 -3.0353 -8.0546 -4.2318 34 1 -2.6517 -3.1652 -7.3262 35 1 -1.7671 -4.7026 -7.5049 36 1 -4.3846 -4.3255 -5.9655 37 1 -4.2268 -5.0849 -7.5705 38 1 2.9459 -4.4245 -1.1809 39 1 2.1557 -5.6554 -0.1614 40 1 2.6624 -3.4371 1.0130 41 1 0.9597 -3.9603 1.0897 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594294642.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:29 Heat of formation + Delta-G solvation = -29.846319 kcal Electronic energy + Delta-G solvation = -27357.292844 eV Core-core repulsion = 23432.393974 eV Total energy + Delta-G solvation = -3924.898870 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.71368 -41.27654 -39.42910 -38.54017 -38.35589 -35.67685 -33.78908 -32.99957 -32.46862 -31.76294 -30.03499 -28.70321 -26.50946 -25.81694 -24.91057 -24.51398 -23.07160 -22.07783 -20.86270 -19.69052 -19.19955 -18.98864 -18.37255 -17.52584 -17.18806 -16.97452 -16.57794 -16.31833 -16.10478 -15.60746 -15.57237 -15.44543 -15.42532 -15.23608 -14.99458 -14.61233 -14.40934 -14.08711 -13.78211 -13.32569 -13.24865 -12.72151 -12.64211 -12.49556 -12.42539 -12.24655 -12.16372 -12.02667 -11.81670 -11.67345 -11.42014 -10.69497 -10.61688 -9.94541 -9.86758 -9.42188 -8.58751 -7.87588 -5.44159 -0.55198 -0.00168 1.47263 1.48295 1.50787 1.57013 1.57264 1.89870 2.03764 2.50291 2.61430 2.89735 3.18643 3.28283 3.48046 3.64333 3.74269 3.90527 3.97690 4.02763 4.16857 4.26174 4.29675 4.46691 4.53312 4.55973 4.59340 4.61726 4.73488 4.81861 4.84261 5.00992 5.08401 5.13925 5.35589 5.51612 5.54598 5.61056 5.65685 6.01612 6.38185 6.39120 6.58848 7.02779 7.11191 7.76852 8.34854 9.17108 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.015135 B = 0.003994 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.598312 B = 7009.081952 C = 8517.390764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.044 4.044 3 Si 0.974 3.026 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.274 1.274 7 C -0.272 4.272 8 H 0.069 0.931 9 N -0.610 5.610 10 C 0.172 3.828 11 C 0.074 3.926 12 N -0.583 5.583 13 C 0.565 3.435 14 O -0.567 6.567 15 C 0.064 3.936 16 C -0.096 4.096 17 C -0.069 4.069 18 C 0.040 3.960 19 C 0.244 3.756 20 N -0.458 5.458 21 O -0.316 6.316 22 C 0.016 3.984 23 C 0.013 3.987 24 O -0.300 6.300 25 C 0.102 3.898 26 C 0.133 3.867 27 H 0.252 0.748 28 H -0.010 1.010 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.146 0.854 32 H 0.172 0.828 33 H 0.193 0.807 34 H 0.160 0.840 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.170 0.830 38 H 0.073 0.927 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.686 -13.174 -17.208 23.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.240 4.240 3 Si 0.801 3.199 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.402 4.402 8 H 0.087 0.913 9 N -0.333 5.333 10 C 0.046 3.954 11 C -0.050 4.050 12 N -0.313 5.313 13 C 0.353 3.647 14 O -0.448 6.448 15 C -0.072 4.072 16 C -0.117 4.117 17 C -0.094 4.094 18 C -0.009 4.009 19 C 0.062 3.938 20 N -0.182 5.182 21 O -0.226 6.226 22 C -0.059 4.059 23 C -0.061 4.061 24 O -0.213 6.213 25 C -0.022 4.022 26 C 0.006 3.994 27 H 0.061 0.939 28 H 0.008 0.992 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.162 0.838 32 H 0.189 0.811 33 H 0.210 0.790 34 H 0.178 0.822 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.187 0.813 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.096 0.904 41 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges -8.202 -12.744 -16.806 22.630 hybrid contribution -0.107 0.842 0.162 0.864 sum -8.309 -11.902 -16.645 22.085 Atomic orbital electron populations 1.70153 1.06916 1.26177 1.54832 1.26033 0.96124 1.01841 0.99994 0.85256 0.77495 0.78647 0.78472 1.20092 1.21880 1.19957 1.19503 0.91511 0.84933 1.44292 0.91341 1.44255 1.35905 1.04843 1.48345 1.21037 0.87853 0.96907 0.89649 1.23561 1.03523 0.82831 0.95062 1.47988 1.31480 1.08652 1.43180 1.18094 0.80639 0.82707 0.83234 1.90704 1.66976 1.37579 1.49508 1.20704 0.99342 0.91570 0.95535 1.22043 0.93519 0.97807 0.98376 1.21256 0.98667 0.98840 0.90673 1.20018 0.92621 0.95842 0.92442 1.19761 0.93595 0.88296 0.92166 1.66713 1.19333 1.27922 1.04200 1.86270 1.76884 1.30832 1.28642 1.24213 0.94046 1.06114 0.81532 1.24132 0.96668 0.83397 1.01897 1.86258 1.57855 1.33824 1.43341 1.22170 0.87809 1.00470 0.91744 1.21372 0.98319 0.86593 0.93088 0.93908 0.99210 0.91645 0.92980 0.83821 0.81065 0.79006 0.82220 0.89111 0.89656 0.81306 0.90857 0.88714 0.90449 0.97377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.59 11.26 21.65 0.24 -56.35 16 2 C -0.04 -2.50 5.01 84.86 0.43 -2.08 16 3 Si 0.97 45.26 29.57 68.60 2.03 47.29 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 7 C -0.27 -15.41 9.54 84.03 0.80 -14.60 16 8 H 0.07 3.72 7.86 -2.91 -0.02 3.70 16 9 N -0.61 -32.59 2.94 -697.34 -2.05 -34.64 16 10 C 0.17 8.99 5.48 86.56 0.47 9.46 16 11 C 0.07 3.22 6.03 86.56 0.52 3.74 16 12 N -0.58 -24.07 2.95 -820.53 -2.42 -26.49 16 13 C 0.57 21.86 7.62 86.80 0.66 22.52 16 14 O -0.57 -23.06 15.78 -3.89 -0.06 -23.12 16 15 C 0.06 2.10 6.59 41.79 0.28 2.37 16 16 C -0.10 -2.35 9.62 22.59 0.22 -2.13 16 17 C -0.07 -1.30 10.08 22.50 0.23 -1.08 16 18 C 0.04 0.87 6.51 22.79 0.15 1.01 16 19 C 0.24 6.77 7.55 85.03 0.64 7.41 16 20 N -0.46 -15.34 6.14 -297.43 -1.83 -17.17 16 21 O -0.32 -7.96 10.51 -81.37 -0.86 -8.81 16 22 C 0.02 0.19 7.24 72.13 0.52 0.71 16 23 C 0.01 0.13 7.26 72.13 0.52 0.65 16 24 O -0.30 -4.88 10.42 -79.07 -0.82 -5.71 16 25 C 0.10 4.03 6.60 86.41 0.57 4.60 16 26 C 0.13 6.03 6.67 86.41 0.58 6.60 16 27 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 28 H -0.01 -0.58 8.14 -2.38 -0.02 -0.60 16 29 H 0.07 3.76 6.25 -2.39 -0.01 3.74 16 30 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.15 6.03 4.07 -63.66 -0.26 5.77 16 32 H 0.17 3.67 7.64 -2.91 -0.02 3.65 16 33 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.16 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.17 0.19 8.14 -2.39 -0.02 0.17 16 38 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.09 3.50 7.01 -2.39 -0.02 3.48 16 40 H 0.08 3.27 7.93 -2.39 -0.02 3.25 16 41 H 0.01 0.39 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -76.35 334.95 1.64 -74.70 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: 0.82 Total: 11.09 kcal Atomic # 6 Polarization: 32.62 SS G_CDS: 6.59 Total: 39.20 kcal Atomic # 7 Polarization: -128.60 SS G_CDS: -6.05 Total: -134.64 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -1.74 Total: -37.64 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -76.35 1.64 -74.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594294642.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.857 kcal (2) G-P(sol) polarization free energy of solvation -76.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds