Wall clock time and date at job start Tue Mar 31 2020 05:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 116.99967 * 2 1 4 4 O 1.20827 * 120.00168 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99894 * 180.02562 * 3 2 1 6 6 H 1.09005 * 109.46832 * 299.99964 * 5 3 2 7 7 C 1.53000 * 109.47448 * 59.99629 * 5 3 2 8 8 C 1.52995 * 109.47346 * 179.97438 * 5 3 2 9 9 S 1.81398 * 109.47340 * 174.99609 * 8 5 3 10 10 O 1.42104 * 110.54095 * 68.37830 * 9 8 5 11 11 O 1.42094 * 110.54433 * 291.62597 * 9 8 5 12 12 N 1.65604 * 104.44936 * 179.97438 * 9 8 5 13 13 C 1.46957 * 120.65390 * 269.81608 * 12 9 8 14 14 C 1.53197 * 108.89063 * 233.53664 * 13 12 9 15 15 C 1.53040 * 109.31110 * 305.44560 * 14 13 12 16 16 C 1.53044 * 109.53662 * 61.36306 * 15 14 13 17 17 H 1.09001 * 109.52587 * 58.60428 * 16 15 14 18 18 C 1.50706 * 109.49748 * 178.68317 * 16 15 14 19 19 H 1.07998 * 119.99943 * 119.83524 * 18 16 15 20 20 C 1.37879 * 120.00012 * 299.83870 * 18 16 15 21 21 N 1.31523 * 119.99579 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 120.00256 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46996 * 60.00092 * 22 20 18 24 24 H 1.48495 * 109.47117 * 179.97438 * 22 20 18 25 25 H 1.48507 * 109.47062 * 300.00001 * 22 20 18 26 26 C 1.46926 * 120.62802 * 90.00266 * 12 9 8 27 27 H 1.09005 * 109.47172 * 59.99892 * 1 2 3 28 28 H 1.08998 * 109.47148 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46703 * 300.00317 * 1 2 3 30 30 H 1.08998 * 109.47113 * 180.02562 * 7 5 3 31 31 H 1.09004 * 109.46793 * 300.00217 * 7 5 3 32 32 H 1.09000 * 109.47025 * 59.99629 * 7 5 3 33 33 H 1.08996 * 109.47368 * 54.99323 * 8 5 3 34 34 H 1.09001 * 109.47073 * 295.00211 * 8 5 3 35 35 H 1.09001 * 109.46843 * 113.75659 * 13 12 9 36 36 H 1.08997 * 109.71602 * 353.47153 * 13 12 9 37 37 H 1.08995 * 109.50005 * 185.49506 * 14 13 12 38 38 H 1.08994 * 109.52103 * 65.41136 * 14 13 12 39 39 H 1.08994 * 109.45892 * 301.34445 * 15 14 13 40 40 H 1.09001 * 109.45142 * 181.37673 * 15 14 13 41 41 H 0.97002 * 119.99384 * 180.02562 * 21 20 18 42 42 H 1.09002 * 109.58861 * 6.60060 * 26 12 9 43 43 H 1.08996 * 109.58519 * 246.31951 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9564 0.7805 0.8892 7 6 4.1130 0.5814 -1.2501 8 6 4.0002 2.7419 -0.0011 9 16 5.8055 2.8387 0.1474 10 8 6.4298 2.3450 -1.0298 11 8 6.2239 2.4067 1.4348 12 7 6.1349 4.4616 0.1335 13 6 6.3931 5.1630 -1.1319 14 6 7.7277 5.9073 -1.0230 15 6 7.7002 6.8183 0.2065 16 6 7.5154 5.9709 1.4674 17 1 8.3289 5.2494 1.5439 18 6 7.5209 6.8656 2.6801 19 1 6.6581 6.9013 3.3287 20 6 8.6273 7.6388 2.9614 21 7 9.6777 7.5957 2.1710 22 14 8.6339 8.7484 4.4640 23 1 8.4503 7.9264 5.6871 24 1 9.9303 9.4683 4.5421 25 1 7.5265 9.7321 4.3578 26 6 6.1785 5.2273 1.3867 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 5.2015 0.6381 -1.2503 31 1 3.8039 -0.4639 -1.2501 32 1 3.7229 1.0756 -2.1399 33 1 3.5383 3.2578 0.8406 34 1 3.6864 3.2133 -0.9325 35 1 5.5913 5.8765 -1.3220 36 1 6.4422 4.4425 -1.9482 37 1 7.8827 6.5092 -1.9183 38 1 8.5395 5.1868 -0.9238 39 1 6.8732 7.5228 0.1180 40 1 8.6395 7.3674 0.2724 41 1 10.4563 8.1394 2.3692 42 1 6.0868 4.5474 2.2337 43 1 5.3591 5.9459 1.4046 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594801076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:40 Heat of formation + Delta-G solvation = -165.311043 kcal Electronic energy + Delta-G solvation = -25982.350507 eV Core-core repulsion = 22154.728646 eV Total energy + Delta-G solvation = -3827.621861 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.88065 -37.71368 -37.06084 -36.96338 -35.82511 -35.14193 -33.30948 -31.13273 -30.08348 -28.51049 -27.65124 -25.10993 -24.37240 -23.59819 -21.68701 -20.76286 -19.52339 -18.60875 -17.91276 -17.50193 -16.98652 -16.63183 -16.16292 -15.98346 -15.75946 -14.88285 -14.56687 -14.21873 -13.97108 -13.65118 -13.43351 -13.22998 -13.20380 -12.96782 -12.80639 -12.57880 -12.41686 -12.17383 -11.87593 -11.78999 -11.70556 -11.65571 -11.35640 -11.14745 -10.95252 -10.94093 -10.83408 -10.72885 -10.51654 -10.20751 -9.92439 -9.78400 -9.35677 -8.83168 -8.43722 -8.16744 -5.99361 -4.06885 0.34506 1.86001 2.32785 2.89195 3.32567 3.37349 3.39891 3.85498 4.09723 4.16380 4.42576 4.43907 4.50388 4.71789 4.76311 4.83406 5.09574 5.16786 5.19667 5.30077 5.31876 5.40549 5.61697 5.69862 5.78316 5.84344 6.01529 6.03085 6.23219 6.34448 6.47456 6.63120 6.64665 6.88249 7.01392 7.23935 7.39434 7.45660 7.72303 7.98158 8.11021 8.40520 8.96275 9.57681 11.06131 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.021850 B = 0.003335 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.167718 B = 8392.793960 C = 9017.075671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.356 6.356 3 C 0.473 3.527 4 O -0.499 6.499 5 C -0.069 4.069 6 H 0.123 0.877 7 C -0.177 4.177 8 C -0.633 4.633 9 S 2.608 3.392 10 O -0.954 6.954 11 O -0.946 6.946 12 N -0.989 5.989 13 C 0.121 3.879 14 C -0.130 4.130 15 C -0.111 4.111 16 C 0.043 3.957 17 H 0.033 0.967 18 C -0.516 4.516 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.888 5.888 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.278 1.278 26 C 0.121 3.879 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.035 0.965 40 H 0.095 0.905 41 H 0.261 0.739 42 H 0.080 0.920 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.518 -12.991 -8.043 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.273 6.273 3 C 0.314 3.686 4 O -0.385 6.385 5 C -0.089 4.089 6 H 0.141 0.859 7 C -0.234 4.234 8 C -0.758 4.758 9 S 2.700 3.300 10 O -0.945 6.945 11 O -0.936 6.936 12 N -0.829 5.829 13 C -0.004 4.004 14 C -0.169 4.169 15 C -0.149 4.149 16 C 0.023 3.977 17 H 0.051 0.949 18 C -0.555 4.555 19 H 0.075 0.925 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.721 3.279 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.003 4.003 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.112 0.888 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.159 0.841 34 H 0.156 0.844 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.054 0.946 40 H 0.113 0.887 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.985 -13.315 -7.999 20.901 hybrid contribution -0.984 1.148 0.784 1.704 sum -14.969 -12.167 -7.214 20.595 Atomic orbital electron populations 1.23311 0.76088 1.03843 1.02718 1.86496 1.23577 1.33127 1.84070 1.23426 0.91456 0.81450 0.72251 1.90681 1.66874 1.36328 1.44628 1.20672 0.89482 0.95098 1.03679 0.85932 1.22274 1.03941 1.01876 0.95292 1.30925 1.30196 1.01539 1.13165 1.05075 0.76716 0.73732 0.74463 1.93546 1.72222 1.78779 1.49924 1.93612 1.78989 1.80381 1.40658 1.57582 1.83880 1.27203 1.14200 1.21462 0.98723 0.96197 0.84006 1.21931 0.95707 0.99306 0.99979 1.21602 1.03222 0.97475 0.92602 1.18921 0.90826 0.94097 0.93831 0.94914 1.21059 1.01095 1.24365 1.09011 0.92490 1.24943 0.95450 0.96890 0.96542 1.69874 1.04906 1.40572 1.37290 0.86644 0.77125 0.80714 0.83405 1.20228 1.21349 1.20315 1.21892 1.01681 0.94678 0.82025 0.91801 0.87897 0.91739 0.88796 0.89791 0.90807 0.84081 0.84367 0.92214 0.90172 0.92536 0.92181 0.94607 0.88713 0.92898 0.90213 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 101.05 1.07 1.30 16 2 O -0.36 -3.49 10.47 -39.24 -0.41 -3.90 16 3 C 0.47 5.46 7.26 36.01 0.26 5.72 16 4 O -0.50 -7.00 15.67 -18.75 -0.29 -7.29 16 5 C -0.07 -0.74 2.83 -91.77 -0.26 -1.00 16 6 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 7 C -0.18 -1.66 8.81 37.16 0.33 -1.33 16 8 C -0.63 -7.41 4.97 37.15 0.18 -7.22 16 9 S 2.61 39.99 5.11 -107.50 -0.55 39.44 16 10 O -0.95 -15.59 14.33 -57.54 -0.82 -16.41 16 11 O -0.95 -17.65 16.59 -57.54 -0.95 -18.60 16 12 N -0.99 -17.01 3.23 -113.50 -0.37 -17.38 16 13 C 0.12 1.93 6.42 -3.69 -0.02 1.91 16 14 C -0.13 -2.41 6.08 -26.61 -0.16 -2.57 16 15 C -0.11 -2.50 4.96 -26.69 -0.13 -2.63 16 16 C 0.04 1.06 2.25 -91.65 -0.21 0.85 16 17 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 18 C -0.52 -13.80 8.56 -34.44 -0.29 -14.09 16 19 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 21 N -0.89 -24.97 11.32 55.43 0.63 -24.34 16 22 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C 0.12 2.43 5.65 -3.71 -0.02 2.41 16 27 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 28 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.09 0.98 5.61 -51.93 -0.29 0.68 16 31 H 0.08 0.63 8.11 -51.93 -0.42 0.20 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.14 1.61 7.96 -51.93 -0.41 1.20 16 34 H 0.14 1.43 8.14 -51.92 -0.42 1.01 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.12 6.87 -51.93 -0.36 0.77 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 2.42 6.05 -51.93 -0.31 2.11 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.08 1.60 6.86 -51.93 -0.36 1.24 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -33.00 356.42 -8.54 -41.54 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.77 Total: 0.66 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 0.65 Total: -15.04 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.26 Total: -41.72 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -2.48 Total: -46.21 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 39.99 SS G_CDS: -0.55 Total: 39.44 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.00 -8.54 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594801076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.773 kcal (2) G-P(sol) polarization free energy of solvation -32.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds