Wall clock time and date at job start Tue Mar 31 2020 04:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46873 * 179.97438 * 10 9 7 12 12 S 1.81402 * 109.46911 * 179.97438 * 11 10 9 13 13 O 1.42091 * 110.54497 * 291.62816 * 12 11 10 14 14 O 1.42099 * 110.53989 * 68.37910 * 12 11 10 15 15 N 1.65600 * 104.44695 * 179.97438 * 12 11 10 16 16 C 1.47159 * 121.05372 * 90.00209 * 15 12 11 17 17 C 1.53281 * 108.47541 * 129.21940 * 16 15 12 18 18 O 1.42996 * 109.29435 * 52.11841 * 17 16 15 19 19 C 1.42776 * 114.13062 * 297.82385 * 18 17 16 20 20 H 1.09005 * 109.34691 * 302.90220 * 19 18 17 21 21 C 1.52789 * 109.99171 * 183.24651 * 19 18 17 22 22 O 1.41872 * 109.89047 * 296.34310 * 21 19 18 23 23 C 1.42948 * 113.66442 * 298.72233 * 22 21 19 24 24 C 1.53035 * 109.27368 * 61.88534 * 23 22 21 25 25 C 1.47294 * 121.05886 * 269.71803 * 15 12 11 26 26 H 1.08997 * 110.09861 * 351.25299 * 25 15 12 27 27 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 29 29 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 30 30 H 1.09004 * 109.47139 * 299.99623 * 10 9 7 31 31 H 1.08997 * 109.47675 * 60.00023 * 10 9 7 32 32 H 1.08994 * 109.47272 * 300.00031 * 11 10 9 33 33 H 1.09003 * 109.46507 * 60.00134 * 11 10 9 34 34 H 1.08998 * 109.63777 * 248.91008 * 16 15 12 35 35 H 1.08992 * 109.63948 * 9.32309 * 16 15 12 36 36 H 1.08999 * 109.50098 * 172.06261 * 17 16 15 37 37 H 1.08994 * 109.50317 * 292.13586 * 17 16 15 38 38 H 1.08998 * 109.42550 * 56.28848 * 21 19 18 39 39 H 1.09000 * 109.42596 * 176.12416 * 21 19 18 40 40 H 1.08994 * 109.50735 * 301.94819 * 23 22 21 41 41 H 1.08996 * 109.53619 * 181.84498 * 23 22 21 42 42 H 1.08997 * 109.48802 * 182.02390 * 24 23 22 43 43 H 1.09009 * 109.48710 * 61.96527 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5517 -2.6364 0.0009 12 16 6.1563 -4.3467 0.0016 13 8 5.8602 -4.9799 1.2387 14 8 5.8602 -4.9807 -1.2352 15 7 7.8060 -4.2017 0.0007 16 6 8.5627 -4.1346 1.2610 17 6 9.6954 -5.1658 1.2030 18 8 10.4449 -4.9770 -0.0001 19 6 9.6892 -5.1732 -1.1955 20 1 9.2587 -6.1746 -1.1903 21 6 10.5961 -5.0282 -2.4165 22 8 11.1031 -3.7051 -2.4868 23 6 10.0880 -2.7083 -2.6264 24 6 9.1733 -2.7438 -1.4000 25 6 8.5629 -4.1420 -1.2614 26 1 7.9057 -4.3606 -2.1030 27 1 -0.4850 0.8400 -0.0004 28 1 3.8753 -0.6803 -0.8889 29 1 3.8746 -0.6799 0.8911 30 1 3.6579 -3.1505 0.8908 31 1 3.6587 -3.1502 -0.8892 32 1 5.9150 -2.1226 -0.8890 33 1 5.9149 -2.1227 0.8910 34 1 8.9824 -3.1362 1.3836 35 1 7.9015 -4.3593 2.0978 36 1 10.3507 -5.0353 2.0641 37 1 9.2736 -6.1707 1.2156 38 1 11.4280 -5.7278 -2.3353 39 1 10.0262 -5.2472 -3.3195 40 1 9.5020 -2.9087 -3.5233 41 1 10.5513 -1.7250 -2.7065 42 1 8.3766 -2.0095 -1.5192 43 1 9.7531 -2.5100 -0.5070 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907746302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:32:23 Heat of formation + Delta-G solvation = -161.607465 kcal Electronic energy + Delta-G solvation = -26327.366233 eV Core-core repulsion = 22499.904972 eV Total energy + Delta-G solvation = -3827.461262 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.133 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.76722 -37.97350 -37.15668 -35.97706 -35.45935 -34.88590 -32.60689 -32.26629 -31.16547 -28.51084 -28.26751 -25.19932 -24.00245 -23.55581 -23.19382 -20.57106 -20.02512 -18.97865 -17.97220 -17.18722 -17.05651 -16.85771 -16.52729 -16.14629 -15.77758 -15.62519 -15.22759 -14.77054 -14.48357 -14.25329 -14.01676 -13.93156 -13.64690 -12.98219 -12.69029 -12.53722 -12.41385 -12.35597 -12.23217 -12.04858 -11.90071 -11.67217 -11.62056 -11.53243 -11.31459 -11.06527 -10.99949 -10.61213 -10.46696 -10.15487 -9.92894 -9.89205 -9.73642 -9.32881 -9.00723 -8.63088 -6.12670 -4.12367 0.20411 2.44745 3.22441 3.22867 3.30787 3.32367 3.69192 3.79719 4.01523 4.19068 4.28107 4.36196 4.50663 4.52455 4.63806 4.75298 4.87385 4.90148 4.96305 4.99402 5.03634 5.10675 5.12064 5.20859 5.24941 5.31865 5.42229 5.49527 5.55970 5.66867 5.72320 5.95881 6.03542 6.18417 6.19246 6.59475 6.73631 6.92363 7.06103 7.20271 7.66098 8.42859 8.91373 9.48184 11.00580 Molecular weight = 319.13amu Principal moments of inertia in cm(-1) A = 0.019853 B = 0.003468 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.046163 B = 8071.388232 C = 8729.653153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.266 1.266 6 H -0.286 1.286 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.003 4.003 10 C -0.098 4.098 11 C -0.612 4.612 12 S 2.597 3.403 13 O -0.955 6.955 14 O -0.956 6.956 15 N -1.003 6.003 16 C 0.081 3.919 17 C 0.051 3.949 18 O -0.361 6.361 19 C 0.051 3.949 20 H 0.072 0.928 21 C 0.072 3.928 22 O -0.368 6.368 23 C 0.060 3.940 24 C -0.166 4.166 25 C 0.118 3.882 26 H 0.115 0.885 27 H 0.264 0.736 28 H 0.015 0.985 29 H 0.020 0.980 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.057 0.943 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.056 0.944 41 H 0.100 0.900 42 H 0.079 0.921 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.338 -8.305 -2.113 25.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.191 1.191 6 H -0.212 1.212 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.042 4.042 10 C -0.137 4.137 11 C -0.744 4.744 12 S 2.695 3.305 13 O -0.945 6.945 14 O -0.947 6.947 15 N -0.839 5.839 16 C -0.045 4.045 17 C -0.027 4.027 18 O -0.279 6.279 19 C -0.009 4.009 20 H 0.090 0.910 21 C -0.006 4.006 22 O -0.286 6.286 23 C -0.017 4.017 24 C -0.206 4.206 25 C 0.012 3.988 26 H 0.133 0.867 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.038 0.962 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.095 0.905 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.075 0.925 38 H 0.123 0.877 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.098 0.902 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 24.085 -8.942 -2.076 25.775 hybrid contribution -0.248 1.572 0.139 1.597 sum 23.838 -7.370 -1.937 25.026 Atomic orbital electron populations 1.69909 1.06285 1.27037 1.50559 1.25026 0.94762 0.99176 0.94406 0.86776 0.80310 0.83614 0.78554 1.20189 1.19093 1.21201 1.21123 0.89202 0.94794 1.51519 0.90733 1.19523 0.97377 0.90584 0.96728 1.21329 0.86526 1.03068 1.02781 1.30643 1.09455 1.23149 1.11172 1.05493 0.72308 0.78380 0.74313 1.93566 1.82483 1.73288 1.45176 1.93560 1.82554 1.73298 1.45247 1.58161 1.24464 1.90172 1.11150 1.22148 0.95396 1.00864 0.86052 1.22921 0.93790 0.97969 0.88043 1.87975 1.35724 1.91436 1.12815 1.22882 0.92415 0.98161 0.87466 0.91010 1.22407 0.98469 0.85581 0.94155 1.87850 1.32302 1.14649 1.93803 1.22622 0.90102 0.92828 0.96160 1.22550 1.00407 0.96700 1.00908 1.21655 0.94085 0.96188 0.86907 0.86691 0.92571 0.96622 0.96168 0.90974 0.91013 0.85464 0.85352 0.90468 0.87612 0.87512 0.92479 0.87706 0.91160 0.92620 0.88225 0.90205 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.53 -14.90 9.66 -34.44 -0.33 -15.23 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C 0.00 -0.08 4.04 -27.88 -0.11 -0.19 16 10 C -0.10 -1.86 5.16 -26.73 -0.14 -2.00 16 11 C -0.61 -8.59 6.18 37.16 0.23 -8.36 16 12 S 2.60 36.20 5.48 -107.50 -0.59 35.61 16 13 O -0.95 -15.74 16.63 -57.54 -0.96 -16.69 16 14 O -0.96 -15.69 16.63 -57.54 -0.96 -16.65 16 15 N -1.00 -10.85 2.95 -106.08 -0.31 -11.17 16 16 C 0.08 0.73 6.19 -3.54 -0.02 0.71 16 17 C 0.05 0.44 6.99 37.30 0.26 0.70 16 18 O -0.36 -3.68 9.96 -40.53 -0.40 -4.09 16 19 C 0.05 0.48 2.90 -26.92 -0.08 0.40 16 20 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 21 C 0.07 0.57 6.45 37.05 0.24 0.81 16 22 O -0.37 -3.57 10.71 -40.52 -0.43 -4.00 16 23 C 0.06 0.47 6.82 37.18 0.25 0.73 16 24 C -0.17 -1.43 5.38 -26.62 -0.14 -1.57 16 25 C 0.12 1.17 2.76 -67.48 -0.19 0.98 16 26 H 0.12 1.14 6.92 -51.93 -0.36 0.78 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 29 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.13 1.56 8.14 -51.92 -0.42 1.14 16 34 H 0.08 0.59 7.37 -51.93 -0.38 0.21 16 35 H 0.11 0.95 6.89 -51.93 -0.36 0.60 16 36 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.09 0.79 6.82 -51.92 -0.35 0.44 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -35.53 349.33 -9.29 -44.83 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -6.88 Total: -1.76 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -0.13 Total: -21.16 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.46 Total: -37.87 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -2.75 Total: -41.43 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Atomic # 16 Polarization: 36.20 SS G_CDS: -0.59 Total: 35.61 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.53 -9.29 -44.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907746302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.782 kcal (2) G-P(sol) polarization free energy of solvation -35.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds